Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01534.t02-exon1 rna-gnl|WGS:JAHMIT|DVS6B01534.t02-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01534.t02-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01534.t02-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide
gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018637-mRNA2 vs. DB:SwissProt
Match:
GIR1_ARATH (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)
HSP 1 Score: 101.679 bits (252), Expect = 7.941e-28
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 1 MSRRNGNVPKLDLKLNLSPPRGNPH--MEXXXXXXXXXXXXXXXXXXXXENQED--MLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 300
MSRR+ PKL+LKLNLSPP + + SPS+SAT SPTSPPSSCVSSE +D ++YS SPE TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH+
Sbjct: 1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101
BLAST of gene-KPL71_018637-mRNA2 vs. DB:SwissProt
Match:
GIR2_ARATH (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)
HSP 1 Score: 97.0561 bits (240), Expect = 5.015e-26
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 1 MSRRNGNVPKLDLKLNLSPPRGNP-HMEXXXXXXXXXXXXXXXXXXXXENQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 300
MSRRN N PKL+L+LNLSPP M + TSP S S NQE+ + TSMVLVGCPRCLMYVMLS+DDPKCPKCKSTVLLDFL +
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE------NETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95
BLAST of gene-KPL71_018637-mRNA2 vs. DB:SwissProt
Match:
SIED1_ARATH (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)
HSP 1 Score: 56.225 bits (134), Expect = 2.424e-10
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 190 SMVLVGCPRCLMYVMLS-EDDPKCPKCKSTVLLDFL 294
SMV+VGCP C+MY++ S E+DP+CP+C S VLLDFL
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018637-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 3
50 100 150 200 250 300 Expect = 7.94e-28 / Id = 74.04 Expect = 5.01e-26 / Id = 59.41 Expect = 2.42e-10 / Id = 66.67 Sequence GIR1_ARATH GIR2_ARATH SIED1_ARATH
Match Name E-value Identity Description
GIR1_ARATH 7.941e-28 74.04 Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis... [more]
GIR2_ARATH 5.015e-26 59.41 Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis... [more]
SIED1_ARATH 2.424e-10 66.67 Protein salt-induced and EIN3/EIL1-dependent 1 OS=... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018637-mRNA2; organism=Citrus sinensis; type=mRNA; length=348bp ATGAGTCGCAGAAATGGAAACGTGCCAAAACTAGACCTGAAGCTGAACCT GTCACCTCCAAGGGGAAACCCACACATGGAGTCACCAAGCCAATCGGCTA CAGTGTCGCCAACCTCCCCGCCAAGCTCCTGCGTGTCGTCAGAGAACCAA GAAGACATGCTTCAATACTCAAACAGCCCTGAGGCCACGTCCATGGTGCT GGTAGGTTGCCCCAGGTGCCTTATGTATGTGATGCTGTCAGAGGATGATC CCAAATGCCCAAAATGCAAGAGCACTGTCTTGCTGGACTTTCTCCATGAT aaaaacaacaacagcaacaacaataCCCGCGAGACAAGGAGGAGCTGA back to top protein sequence of gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=115bp MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQ EDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD KNNNSNNNTRETRRS back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19885342..19885689-
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=348bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19885342..19885689- (Citrus sinensisATGAGTCGCAGAAATGGAAACGTGCCAAAACTAGACCTGAAGCTGAACCT
GTCACCTCCAAGGGGAAACCCACACATGGAGTCACCAAGCCAATCGGCTA
CAGTGTCGCCAACCTCCCCGCCAAGCTCCTGCGTGTCGTCAGAGAACCAA
GAAGACATGCTTCAATACTCAAACAGCCCTGAGGCCACGTCCATGGTGCT
GGTAGGTTGCCCCAGGTGCCTTATGTATGTGATGCTGTCAGAGGATGATC
CCAAATGCCCAAAATGCAAGAGCACTGTCTTGCTGGACTTTCTCCATGAT
AAAAACAACAACAGCAACAACAATACCCGCGAGACAAGGAGGAGCTGA back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19885342..19885689-
>gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018637-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018637-mRNA2; organism=Citrus sinensis; type=CDS; length=348bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19885342..19885689- (Citrus sinensis ATGAGTCGCAGAAATGGAAACGTGCCAAAACTAGACCTGAAGCTGAACCT GTCACCTCCAAGGGGAAACCCACACATGGAGTCACCAAGCCAATCGGCTA CAGTGTCGCCAACCTCCCCGCCAAGCTCCTGCGTGTCGTCAGAGAACCAA GAAGACATGCTTCAATACTCAAACAGCCCTGAGGCCACGTCCATGGTGCT GGTAGGTTGCCCCAGGTGCCTTATGTATGTGATGCTGTCAGAGGATGATC CCAAATGCCCAAAATGCAAGAGCACTGTCTTGCTGGACTTTCTCCATGAT AAAAACAACAACAGCAACAACAATACCCGCGAGACAAGGAGGAGCTGA back to top