gene-KPL71_018672-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Match: ORLIK_ARATH (Protein ORANGE-LIKE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORLIKE PE=1 SV=1) HSP 1 Score: 364.385 bits (934), Expect = 2.006e-125 Identity = 213/306 (69.61%), Postives = 248/306 (81.05%), Query Frame = 1 Query: 16 FCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 933 F S++ P+ SL GSS+ L+ S+G++NR PP PS D +PNNF IIEG ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K I+E E EA+EMPEI SSIPFLP VTPKTLKQLY TS++ ISGII FGGLIAP LELK+GLGGTSYEDFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL CARCS+SGVCLS+DPI+ A+N ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDPR DPFD Sbjct: 28 FPSSYLKPSPSLLFHGSSRSLLSC-SDGSNNR-------PP----------PSGDTVPNNFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSELEATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDPRFDPFD 315
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Match: ORGRE_CUCME (Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo OX=3656 GN=OR PE=2 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 1.084e-106 Identity = 166/253 (65.61%), Postives = 202/253 (79.84%), Query Frame = 1 Query: 175 SDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 933 SD +F IIEGPET+QDF +M+L+EI++NI+ RRN+IF MEE+RRLR+QQRIK ++ E E FLP ++ + LK Y+T S I+GIILFGGL+APTLELKLGLGGTSYEDFIR++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC G+GYLACARCS++G + ++P+ST N + PL +P T+RC NCSG+GKVMCP+CLCTGM MASEHDPRIDPFD Sbjct: 74 SDKTSASFCIIEGPETVQDFAKMELQEIQENIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEERENELPNFPSFIP-FLPPLSSENLKLYYVTCYSLIAGIILFGGLLAPTLELKLGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCSNTGALVLIEPVSTLNGEHQPLSLPKTERCQNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 325
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Match: ORORA_CUCME (Protein ORANGE-ORANGE, chloroplastic OS=Cucumis melo OX=3656 GN=OR PE=2 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 6.841e-106 Identity = 165/253 (65.22%), Postives = 201/253 (79.45%), Query Frame = 1 Query: 175 SDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 933 SD +F IIEGPET+QDF +M+L+EI++NI+ RN+IF MEE+RRLR+QQRIK ++ E E FLP ++ + LK Y+T S I+GIILFGGL+APTLELKLGLGGTSYEDFIR++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC G+GYLACARCS++G + ++P+ST N + PL +P T+RC NCSG+GKVMCP+CLCTGM MASEHDPRIDPFD Sbjct: 74 SDKTSASFCIIEGPETVQDFAKMELQEIQENIRSHRNKIFLHMEEVRRLRIQQRIKNAELGISKEERENELPNFPSFIP-FLPPLSSENLKLYYVTCYSLIAGIILFGGLLAPTLELKLGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCSNTGALVLIEPVSTLNGEHQPLSLPKTERCQNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 325
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Match: ORANG_ARATH (Protein ORANGE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OR PE=1 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 4.136e-104 Identity = 165/253 (65.22%), Postives = 196/253 (77.47%), Query Frame = 1 Query: 175 SDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 933 +D + F IIEGPET+QDF +MQL+EI+DNI+ RRN+IF MEE+RRLR+QQRIK ++ + E+E FLP +T LK Y T S I+GIILFGGL+APTLELKLG+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC G+GYLACARCSS+G + +P+S N L P T+RC NCSGAGKVMCP+CLCTGM MASEHDPRIDPFD Sbjct: 56 ADKFASGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINEEQEHELPNFPSFIP-FLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSYADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGMAMASEHDPRIDPFD 307
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Match: ORANG_BRAOB (Protein ORANGE, chloroplastic OS=Brassica oleracea var. botrytis OX=3715 GN=OR PE=1 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 3.663e-91 Identity = 159/246 (64.63%), Postives = 191/246 (77.64%), Query Frame = 1 Query: 193 NFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPF 930 F IIEGPET+QDF +MQL+EI+DNI+ RRN+IF MEE+RRLR+QQRI+ ++ E+E FLP +T L+ Y T S I+GIILFGGL+APTLELKLG+GGTSY+DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC G+GYLACARCSS+G + +P+S N + T+RC NCSGAGKVMCP+CLCTGM MASEHDPRIDPF Sbjct: 60 GFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIRNTELGIIDEEQEHELPNFPSFIP-FLPPLTAANLRVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSYKDFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCSSTGSLIISEPVSAIAGGNHSVSTSKTERCSNCSGAGKVMCPTCLCTGMAMASEHDPRIDPF 304 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018672-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018672-mRNA1; organism=Citrus sinensis; type=mRNA; length=936bpback to top protein sequence of gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=311bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:20092650..20095954+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3305bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20092650..20095954+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20092650..20095954+ >gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018672-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018672-mRNA1; organism=Citrus sinensis; type=CDS; length=936bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20092650..20095954+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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