gene-KPL71_018702-mRNA1 | Citrus Genome Database

Transcript Overview


Name	gene-KPL71_018702-mRNA1
Unique Name	gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	2248
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Valencia DVS_B genome v1.0	2023-04-13
BLAST: C. sinensis DVS_B v1.0	2023-04-17
InterPro: C. sinensis DVS_B v1.0	2023-04-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caudvbL154	Citrus australis genome v1.0 (UQ)	Citrus australis
ccdvbL100	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cledvbL085	Citrus limon cv. Eureka genome v1.0	Citrus limon
cledvbL113	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmdvbL262	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csdvbL117	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
dvadvbL304	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
dvbfhR392	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbswoR196	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
dvbfhR451	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbzkR336	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csidvbL352	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
dvbswR287	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
cmjdvbL215	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
dvbfhsR384	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csndvbL314	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL337	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
dvbminR584	Citrus inodora CRC3784 genome v1.0	Citrus inodora
dvbminR610	Citrus inodora CRC3784 genome v1.0	Citrus inodora
dvbeglR0935	Citrus glauca CRC3463 genome v1	Citrus glauca
dvbeglR0975	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrdvbL136	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrdvbL325	Citrus australasica CRC3672 genome v1	Citrus australasica
csgdvbL056	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhdvbL178	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizdvbL101	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
clldvbL195	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmxdvbL287	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmmdvbL321	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caadvbL349	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhdvbL297	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhdvbL307	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
dvbmpkR278	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhdvbL215	Clausena lansium cv. HP genome v1.0	Clausena lansium
dvbmpjR264	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeadvbL031	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigdvbL248	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhdvbL165	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
dvblssR296	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxdvbL268	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
csjdvbL252	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL516	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
dvbneiR285	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cradvbL240	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cradvbL401	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchdvbL194	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciudvbL172	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciudvbL390	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgadvbL189	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgadvbL409	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgudvbL168	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgudvbL362	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cumdvbL000	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crcdvbL318	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cstdvbL221	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmdvbL242	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL405	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KPL71_018702	gene-KPL71_018702_Citrus_sinensis_DVS_B_v1	Citrus sinensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01599.t01-exon1	rna-gnl\|WGS:JAHMIT\|DVS6B01599.t01-exon1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01599.t01-CDS1	rna-gnl\|WGS:JAHMIT\|DVS6B01599.t01-CDS1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	polypeptide
gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1-protein	Citrus sinensis	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of gene-KPL71_018702-mRNA1 vs.

BLAST of gene-KPL71_018702-mRNA1 vs.
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	PADRE domain	PFAM	PF14009	PADRE	coord: 1..155 e-value: 1.0E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..155

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM039175.1_Chr6_DVS_B:20253795..20256042+
coding sequence from alignment at CM039175.1_Chr6_DVS_B:20253795..20256042+

mRNA sequence

>gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018702-mRNA1; organism=Citrus sinensis; type=mRNA; length=2248bp
TCTTATGATAATGAAAAGGCACCAAAAAGAAGCCATGGGGAATTGCTTAG
TCCTTGAAGAAAAAGTGATTAAGGTGATGAAAACAGATGGCAAGATACTT
GAATATAATCAACCCATCAGAGTTCAGGATGTGTTAGCAGAATTTTCTGG
CCATGCAATTTCTGACGCGCTTCCCGAAATCAGGCATCTCAGGCCAGACT
TTAAACTGGTTGGTGGGAACTTGTATTTTCTTGTACCTGTTCCATTGCCA
TCCCAGAAAGTTCAGAAAAAGAAGGTCAGGTTTTCGGATGAAGAGGCGGG
AGCCGGGGCGAAGGAAAGAGGCGGTGTTGTGAGGATTAAGTTGGTTATCA
GTAAGCAAGAGCTGGAGGAGTTACTGCAGAAACAAGGAGTTTCAGTTAAA
GATATGGTTTCTCGGATTCAGAGTAAACAAAGTGCTGATGATTTCCAAAG
TGGTGATAACACTAAAGCGTGGAAGCCTGAGCTGGAAAGCATACCTGAAA
TAGACTAGCAAAACATACACCATCCTTTAGTTTCTATAATCTTTCGTTAG
TTTAACATAGAAAGATAGACAGTGAAATTAACTATATATATGATACATAT
AGCAAAAAGCTCAGCTTAATTAGCTTGTATTTTCATCACAAGGGTTTACC
ATCTTATAAAAATTAGCAACAAAGAAAGCAGCTATGTCTTGGCTTGTTCT
TGCTTGTTTCCCTGTTAAAATCTGGTATTCCTTGTAAACCTCCCATGCAA
TGTCGCTGAGACCTCGGAAACATGTTAACTTTTAGCCATGTGATGCCGTT
GCCAATTAaagactttttcttttcttttctttttttccctataTAAATCA
ATGAAAGCAATCAGTTCGTTCGAGGAGCAGTACCCAAAATCACTAATTAA
ACTTATTCCCCAAAATCTAATATtagattaaaacaaaaataacatagatG
TTTGAATATGTTTCTGAAAAACATGATACGGAAAGTAGTAGGCAATTTCT
CGAGTCTTTGTAATTCAAACCTCAATTTGTGGAAATTTTCAtgttaaaaa
agtaattttataaactaaTACGAAAGAacccaaaatcaaacataCATATG
ATGCAGTGTGAGCAGAGTACGATTTGGAAATGTTTAAGAAGAGACTGATG
GCCCGCCACCGCACACGAGCCACATGTCACCTGATTATTGGCTGGCGTCC
CACAACCCGGCCAATGATCAGGTGACCACAAATCCACAATAATGTGTGGT
GCGACGACTAGCATTTCGTCGCTCATCTGAGGAGATTTAACGGACATCTC
TTTAGACCCACCTGCTCAgtcagaagaaaaagagaaaaatggaaGAAAGC
AATGTAAGCATCCATTACAGCTTAACTTTCAGTAAATCCTATTAttaatc
ataattaagaaGACAGATAAACATGAGTAATAACAATTCATCTTTTACAT
CATTGTTTACTTGATGGCGGTTCCGCTAGTGCTGCCCCCATTTGGCAGTT
CTGGTTGGTGTTCATAATTATGCTAGGCACTAAATATTTGAAGTGCTGGG
ACAAGTCAACTTCATCCAGTAAAAACGCGCATATATGAATATGTGAAATG
GATGAATATATTAAGCTTGTTTCTTTTCTCTGGTGTGCTCCTGTTCCAAT
GCTACAACAAactctcaacttttttttttatttaattttttaatattagg
aCAACAACTTGGATCTCAACTCTATGAATTATCAAAAAAAGTAActcaag
aaaaattatttatcataagTAGGAATTTGACATAATCATGTGTTCAATAA
CTTAAGCTCTGGTTAGCAATATAGTCAAAATGttttaacttaaaagataC
GGTATTAGAATACTTAGTTATTAAACacctaatattataatttgaaaaat
atgttgatttgatttaatacttatatgatataaaattctataatatctta
acttttattttatagttacacctttttttttctagagcAGTTGTGATTTT
AATACCAAAAAACatcttaatttcattaaatcaAATTCTAGCATAATAAA
CCTCAAGAGCGTGGTCGGGTTGGTTGCAGTGCAGCTGTAGCCTCTACTAA
AACCTGAGTTTGATTCTTGGGGATGGTAAGAGggtaaaaaattgtatttg
agTTTGCTCACCCTTcttacctttaaaaaaaaacttgaaaaggaaaaaaa
agaaagaaaagaagagagagagagtagaaATAAGATGtaaaatgagag

protein sequence of gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1

>gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=157bp
MGNCLVLEEKVIKVMKTDGKILEYNQPIRVQDVLAEFSGHAISDALPEIR
HLRPDFKLVGGNLYFLVPVPLPSQKVQKKKVRFSDEEAGAGAKERGGVVR
IKLVISKQELEELLQKQGVSVKDMVSRIQSKQSADDFQSGDNTKAWKPEL
ESIPEID

mRNA from alignment at CM039175.1_Chr6_DVS_B:20253795..20256042+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2248bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20253795..20256042+ (Citrus sinensis
TCTTATGATAATGAAAAGGCACCAAAAAGAAGCCATGGGGAATTGCTTAG
TCCTTGAAGAAAAAGTGATTAAGGTGATGAAAACAGATGGCAAGATACTT
GAATATAATCAACCCATCAGAGTTCAGGATGTGTTAGCAGAATTTTCTGG
CCATGCAATTTCTGACGCGCTTCCCGAAATCAGGCATCTCAGGCCAGACT
TTAAACTGGTTGGTGGGAACTTGTATTTTCTTGTACCTGTTCCATTGCCA
TCCCAGAAAGTTCAGAAAAAGAAGGTCAGGTTTTCGGATGAAGAGGCGGG
AGCCGGGGCGAAGGAAAGAGGCGGTGTTGTGAGGATTAAGTTGGTTATCA
GTAAGCAAGAGCTGGAGGAGTTACTGCAGAAACAAGGAGTTTCAGTTAAA
GATATGGTTTCTCGGATTCAGAGTAAACAAAGTGCTGATGATTTCCAAAG
TGGTGATAACACTAAAGCGTGGAAGCCTGAGCTGGAAAGCATACCTGAAA
TAGACTAGCAAAACATACACCATCCTTTAGTTTCTATAATCTTTCGTTAG
TTTAACATAGAAAGATAGACAGTGAAATTAACTATATATATGATACATAT
AGCAAAAAGCTCAGCTTAATTAGCTTGTATTTTCATCACAAGGGTTTACC
ATCTTATAAAAATTAGCAACAAAGAAAGCAGCTATGTCTTGGCTTGTTCT
TGCTTGTTTCCCTGTTAAAATCTGGTATTCCTTGTAAACCTCCCATGCAA
TGTCGCTGAGACCTCGGAAACATGTTAACTTTTAGCCATGTGATGCCGTT
GCCAATTAaagactttttcttttcttttctttttttccctataTAAATCA
ATGAAAGCAATCAGTTCGTTCGAGGAGCAGTACCCAAAATCACTAATTAA
ACTTATTCCCCAAAATCTAATATtagattaaaacaaaaataacatagatG
TTTGAATATGTTTCTGAAAAACATGATACGGAAAGTAGTAGGCAATTTCT
CGAGTCTTTGTAATTCAAACCTCAATTTGTGGAAATTTTCAtgttaaaaa
agtaattttataaactaaTACGAAAGAacccaaaatcaaacataCATATG
ATGCAGTGTGAGCAGAGTACGATTTGGAAATGTTTAAGAAGAGACTGATG
GCCCGCCACCGCACACGAGCCACATGTCACCTGATTATTGGCTGGCGTCC
CACAACCCGGCCAATGATCAGGTGACCACAAATCCACAATAATGTGTGGT
GCGACGACTAGCATTTCGTCGCTCATCTGAGGAGATTTAACGGACATCTC
TTTAGACCCACCTGCTCAgtcagaagaaaaagagaaaaatggaaGAAAGC
AATGTAAGCATCCATTACAGCTTAACTTTCAGTAAATCCTATTAttaatc
ataattaagaaGACAGATAAACATGAGTAATAACAATTCATCTTTTACAT
CATTGTTTACTTGATGGCGGTTCCGCTAGTGCTGCCCCCATTTGGCAGTT
CTGGTTGGTGTTCATAATTATGCTAGGCACTAAATATTTGAAGTGCTGGG
ACAAGTCAACTTCATCCAGTAAAAACGCGCATATATGAATATGTGAAATG
GATGAATATATTAAGCTTGTTTCTTTTCTCTGGTGTGCTCCTGTTCCAAT
GCTACAACAAactctcaacttttttttttatttaattttttaatattagg
aCAACAACTTGGATCTCAACTCTATGAATTATCAAAAAAAGTAActcaag
aaaaattatttatcataagTAGGAATTTGACATAATCATGTGTTCAATAA
CTTAAGCTCTGGTTAGCAATATAGTCAAAATGttttaacttaaaagataC
GGTATTAGAATACTTAGTTATTAAACacctaatattataatttgaaaaat
atgttgatttgatttaatacttatatgatataaaattctataatatctta
acttttattttatagttacacctttttttttctagagcAGTTGTGATTTT
AATACCAAAAAACatcttaatttcattaaatcaAATTCTAGCATAATAAA
CCTCAAGAGCGTGGTCGGGTTGGTTGCAGTGCAGCTGTAGCCTCTACTAA
AACCTGAGTTTGATTCTTGGGGATGGTAAGAGggtaaaaaattgtatttg
agTTTGCTCACCCTTcttacctttaaaaaaaaacttgaaaaggaaaaaaa
agaaagaaaagaagagagagagagtagaaATAAGATGtaaaatgagag

Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20253795..20256042+

>gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018702-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018702-mRNA1; organism=Citrus sinensis; type=CDS; length=474bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20253795..20256042+ (Citrus sinensis
ATGGGGAATTGCTTAGTCCTTGAAGAAAAAGTGATTAAGGTGATGAAAAC
AGATGGCAAGATACTTGAATATAATCAACCCATCAGAGTTCAGGATGTGT
TAGCAGAATTTTCTGGCCATGCAATTTCTGACGCGCTTCCCGAAATCAGG
CATCTCAGGCCAGACTTTAAACTGGTTGGTGGGAACTTGTATTTTCTTGT
ACCTGTTCCATTGCCATCCCAGAAAGTTCAGAAAAAGAAGGTCAGGTTTT
CGGATGAAGAGGCGGGAGCCGGGGCGAAGGAAAGAGGCGGTGTTGTGAGG
ATTAAGTTGGTTATCAGTAAGCAAGAGCTGGAGGAGTTACTGCAGAAACA
AGGAGTTTCAGTTAAAGATATGGTTTCTCGGATTCAGAGTAAACAAAGTG
CTGATGATTTCCAAAGTGGTGATAACACTAAAGCGTGGAAGCCTGAGCTG
GAAAGCATACCTGAAATAGACTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	PADRE_dom