gene-KPL71_018789-mRNA1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.394e-22 Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 2291 TPKKAESNKKRPVESASKTHVPDKKAKFVTP--QKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 2584
TPKK E+ KKR E+A KT + DKKAK TP QKT +KG +H+ATPHP+K KT AN+D+ ++ KSG S PCKSC+++F +E LQ+H+KAKHGA
Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302 HSP 2 Score: 65.855 bits (159), Expect = 4.008e-10 Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWK 1936
+EVK G +K PG I+H+SQA+LGE KK S+S +Y+KVDDKKL +GTLS K+PQ+ FDL K+FELSH K
Sbjct: 6 LEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSK 81
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.934e-21 Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 2 Query: 2291 TPKKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 2584
TPKKAE K+R +SA+KT V DKKAK TPQKT+ +KG H+ATPHPSK+++KT P+ +GS CK CNRSF +EG L SH+KAKH A
Sbjct: 181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKT----------PKSAGSHH-CKPCNRSFGSEGALDSHSKAKHSA 267 HSP 2 Score: 88.9669 bits (219), Expect = 4.380e-18 Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKNGN 1945
EVKSG+PL + PGD ++HLSQASLGE+KKDK SESV L + +D KKLVLGTL+++K PQ FDL ++DFELSHN K+G+
Sbjct: 6 AEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGS 86
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.554e-18 Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 2 Query: 2291 TPKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPR---KSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 2584
TPKK E KKRP ES+ KT + DKKAK TP QKT +KG + H+ATPHP+K KT+ N+D++ + P+ KSG S PCK C++SF +E LQ+H++AK GA
Sbjct: 199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301 HSP 2 Score: 60.4622 bits (145), Expect = 2.254e-8 Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKN 1939
+EVK G +K PG ++HLSQA+LGE KK S++ +Y+K+DD+KL +GTLS K P + FDL +K+FELSH K
Sbjct: 6 LEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.890e-18 Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 2 Query: 2297 KKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 2584
KK + KKRP ESA+KT + KKAK TP+KT+ +K V H+ATPHPSKK KT + TK Q S C SC +SFT E GLQ H KAKHG
Sbjct: 203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKT---PNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGG 294 HSP 2 Score: 63.5438 bits (153), Expect = 1.846e-9 Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGD--NKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKN------------GN------SDEDKMDIRLV----SNGKPELQAK 2008
VEVK GQ + ++P D + +H+SQ +LGE KKDK +E V LYLKV ++K+VLGTLS P LS DL ++ D ELSH K+ GN SD + D L NGKPEL+A+
Sbjct: 6 VEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAE 132
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana OX=3702 GN=HDT3 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 2.102e-17 Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 2333 SASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSD----QTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 2590
++SK +KKAKFVTPQKT+ +K H+ATPHPSK++ K +QQ KS +F CKSC R+FT+E GLQSHTKAKH A A
Sbjct: 205 NSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294 HSP 2 Score: 77.7962 bits (190), Expect = 3.046e-14 Identity = 42/82 (51.22%), Postives = 64/82 (78.05%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKNGN 1945
VEVK+G+PL ++PG +++VH+SQ +LGE K+ +E + LY+ V KL++GTLS +KFPQLS ++ +E++F LSH WKNG+
Sbjct: 6 VEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGS 86
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.988e-16 Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 2291 TPKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPRKS-GSSFPCKSCNRSFTTEGGLQSHTKAKHGA 2584
TPKK E KKR ES+ KT + DKKAK TP QKT +KG + H+ATPHP+K KT+ N+D++ + P+ + S PCKSC++SF +E Q+H+KAKHG
Sbjct: 199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHGG 299 HSP 2 Score: 60.4622 bits (145), Expect = 2.149e-8 Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKN 1939
+EVK G +K PG ++HLSQA+LGE KK S++ +Y+K+DD+KL +GTLS K P + FDL +K+FELSH K
Sbjct: 6 LEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana OX=3702 GN=HDT1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.347e-12 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKNGN 1945
+EVKSG+P+ + P + ++H+SQASLGE K KG E V L++KV ++ LVLGTLS + PQL DL +K+FELSH W G+
Sbjct: 6 IEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGS 86
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana OX=3702 GN=HDT2 PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 4.148e-7 Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 2 Query: 1727 KINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXXXXXGTLSAQKFPQLSFDLAIEKDFELSHNWKNGN 1945
K+ P ++ +VH+SQASL K ESV L + V KLV+GTLS KFPQ+SFDL +K+FELSH+ N
Sbjct: 15 KVTPEEDSLVHISQASLDCTVKS--GESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKAN 85
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana OX=3702 GN=HDT4 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.262e-7 Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 1700 VEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESXXXXXXXXXXX--XXXGTLSAQKFPQLSFDLAIEKDFELSHN 1930
+E+K G+P K+ D +VH SQ +LG+++K K E+ +Y+K+ D + ++G LS QKFPQ S DL + +FE+SHN
Sbjct: 6 IEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN 83 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018789-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 9 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018789-mRNA1; organism=Citrus sinensis; type=mRNA; length=2620bpback to top protein sequence of gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=302bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:20930897..20935831+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4935bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20930897..20935831+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20930897..20935831+ >gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018789-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018789-mRNA1; organism=Citrus sinensis; type=CDS; length=909bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20930897..20935831+ (Citrus sinensisback to top |