Transcript Overview
| Name | gene-KPL71_018807-mRNA2 |
|---|
| Unique Name | gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 |
|---|
| Type | mRNA |
|---|
| Organism | Citrus sinensis (Sweet orange) |
|---|
| Sequence length | 1428 |
|---|
| Product | Sequence-specific DNA binding transcription factor |
|---|
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-gnl|WGS:JAHMIT|DVS6B01704.t02-exon1 | rna-gnl|WGS:JAHMIT|DVS6B01704.t02-exon1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-gnl|WGS:JAHMIT|DVS6B01704.t02-CDS1 | rna-gnl|WGS:JAHMIT|DVS6B01704.t02-CDS1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | polypeptide |
| gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1-protein | Citrus sinensis | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR044822 | Myb/SANT-like DNA-binding domain 4 | PFAM | PF13837 | Myb_DNA-bind_4 | coord: 109..232
e-value: 5.5E-21
score: 74.7 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 112..183
e-value: 1.5E-13
score: 52.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 301..323 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 243..360 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 333..351 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 52..83 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..106 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 11..25 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 256..286 |
| None | No IPR available | PANTHER | PTHR46327 | F16F4.11 PROTEIN-RELATED | coord: 1..461 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018807-mRNA2; organism=Citrus sinensis; type=mRNA; length=1428bp
ATGCTGGGGCTAGAAATGCCATTACACCCACAATCACAACCACAGCCACA
GCCGCAACCACAACAACAAAACCCTCAAACAAACCCACAAAACCCTCACC
ACTATCCTCAAATGGTTGCATTTTCACATCACCCTCATGATACTGAGTTG
CATCACACGCAAACACAATCCCAGCAATCCGTGAAACAGCAACATGGCta
cttattttcttccaaGCAAAAGCAGCAGCAGCTATCGCCGCTCAGTGATG
AAGATGAACTTGGATTAACCCCTGATGATAGTGCTGGAGATGGCAAGAGA
AAAGCATCTTCTTCTCCCTGGCAGAGAATGAAATGGACCGATAGCATGGT
TAAGCTGCTTATTCTGGCTGTTCTTTACATTGGTGATGAAGTTGGGTCCG
ACGGGAACGATAAGAAAAAGACTGGAGCTTTGTTACAGAAGAAAGGGAAA
TGGAAATCGGTTTCGAGGGCTATGCTGGAGAGAGGGTTTTACGTATCTCC
TCAGCAATGTGAGGACAAATTTAATGACTTGAATAAGAGATACAAAAGGG
TTAATGAAATCCTTGGCAAAGGAACTGCTTGCCGTGTTGTGGAGAATCAG
AGTTTGCTCGAGACGATGGATTTGACACCCAAAATGAAGGAGGAAGTGAA
GAAGTTACTCAACTCTAAGCATTTGTTTTTCAAGGAAATGTGTGCTTATC
ATAGTACTTGTGGTCATGGTAGTGGTACTGGCGGGACTCCTGGTGCCAAT
CACTCGCCAGAAGTAGCCACAGAGCCCTCTGTGGTTCAGCAACAACAAGC
ACAGCACCGGTGTTTGCATTCATCAGAGACTTCCCAACTTGGGGCCAATT
CAAATAGAGCTGAAATGGAAGGAACAAAATTGGTAAAAGTGGGGAGTGAT
GAAGAGGATGATGTGGAAGAGGACGAATCTGATGAGGATGATtatgacga
cgacgacgacgacgaggCAGTAGGAAATTCGAGGGGCCAACAAAATGGGC
ATGGAcaggaagatgaagatgaaaacGATGAGAAACTGTCGAGAAAAAGG
CAAAGACAGGGTAGCTTACCTGTACCAGTGTCACCAATGGTGCTGCAACT
ACGTTGTGAAGTGAGCAACGTGATTCAAGATGGGGCCAAGACTTCATGGG
AAAAGAAGCAGtggatgaagatgaagttACTGCAATTAGAGGAGCAGCAA
ATAAGCTACCAATACCAAGCTTTCGAGCTTGAGAAGCAGAGGTTAAAGTG
GGTGAAGTTTAGCTCCAAGAAGGAGAGGGAAATGGAGAAAGCAAAGCTGG
TGAATGAGCGGAGGCGGCTTGAGAATGAAAGAATGCTTCTTGCTCTTAGG
CAGAAGGATTATGAATTGCTTGATCAACAGCAGCATTCTTCAAACAAAAG
GAGTGACCCGTCTTCCATTACAGGATAA back to topprotein sequence of gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=475bp
MLGLEMPLHPQSQPQPQPQPQQQNPQTNPQNPHHYPQMVAFSHHPHDTEL
HHTQTQSQQSVKQQHGYLFSSKQKQQQLSPLSDEDELGLTPDDSAGDGKR
KASSSPWQRMKWTDSMVKLLILAVLYIGDEVGSDGNDKKKTGALLQKKGK
WKSVSRAMLERGFYVSPQQCEDKFNDLNKRYKRVNEILGKGTACRVVENQ
SLLETMDLTPKMKEEVKKLLNSKHLFFKEMCAYHSTCGHGSGTGGTPGAN
HSPEVATEPSVVQQQQAQHRCLHSSETSQLGANSNRAEMEGTKLVKVGSD
EEDDVEEDESDEDDYDDDDDDEAVGNSRGQQNGHGQEDEDENDEKLSRKR
QRQGSLPVPVSPMVLQLRCEVSNVIQDGAKTSWEKKQWMKMKLLQLEEQQ
ISYQYQAFELEKQRLKWVKFSSKKEREMEKAKLVNERRRLENERMLLALR
QKDYELLDQQQHSSNKRSDPSSITG back to topmRNA from alignment at CM039175.1_Chr6_DVS_B:21038936..21040363- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=1428bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21038936..21040363- (Citrus sinensis
ATGCTGGGGCTAGAAATGCCATTACACCCACAATCACAACCACAGCCACA
GCCGCAACCACAACAACAAAACCCTCAAACAAACCCACAAAACCCTCACC
ACTATCCTCAAATGGTTGCATTTTCACATCACCCTCATGATACTGAGTTG
CATCACACGCAAACACAATCCCAGCAATCCGTGAAACAGCAACATGGCTA
CTTATTTTCTTCCAAGCAAAAGCAGCAGCAGCTATCGCCGCTCAGTGATG
AAGATGAACTTGGATTAACCCCTGATGATAGTGCTGGAGATGGCAAGAGA
AAAGCATCTTCTTCTCCCTGGCAGAGAATGAAATGGACCGATAGCATGGT
TAAGCTGCTTATTCTGGCTGTTCTTTACATTGGTGATGAAGTTGGGTCCG
ACGGGAACGATAAGAAAAAGACTGGAGCTTTGTTACAGAAGAAAGGGAAA
TGGAAATCGGTTTCGAGGGCTATGCTGGAGAGAGGGTTTTACGTATCTCC
TCAGCAATGTGAGGACAAATTTAATGACTTGAATAAGAGATACAAAAGGG
TTAATGAAATCCTTGGCAAAGGAACTGCTTGCCGTGTTGTGGAGAATCAG
AGTTTGCTCGAGACGATGGATTTGACACCCAAAATGAAGGAGGAAGTGAA
GAAGTTACTCAACTCTAAGCATTTGTTTTTCAAGGAAATGTGTGCTTATC
ATAGTACTTGTGGTCATGGTAGTGGTACTGGCGGGACTCCTGGTGCCAAT
CACTCGCCAGAAGTAGCCACAGAGCCCTCTGTGGTTCAGCAACAACAAGC
ACAGCACCGGTGTTTGCATTCATCAGAGACTTCCCAACTTGGGGCCAATT
CAAATAGAGCTGAAATGGAAGGAACAAAATTGGTAAAAGTGGGGAGTGAT
GAAGAGGATGATGTGGAAGAGGACGAATCTGATGAGGATGATTATGACGA
CGACGACGACGACGAGGCAGTAGGAAATTCGAGGGGCCAACAAAATGGGC
ATGGACAGGAAGATGAAGATGAAAACGATGAGAAACTGTCGAGAAAAAGG
CAAAGACAGGGTAGCTTACCTGTACCAGTGTCACCAATGGTGCTGCAACT
ACGTTGTGAAGTGAGCAACGTGATTCAAGATGGGGCCAAGACTTCATGGG
AAAAGAAGCAGTGGATGAAGATGAAGTTACTGCAATTAGAGGAGCAGCAA
ATAAGCTACCAATACCAAGCTTTCGAGCTTGAGAAGCAGAGGTTAAAGTG
GGTGAAGTTTAGCTCCAAGAAGGAGAGGGAAATGGAGAAAGCAAAGCTGG
TGAATGAGCGGAGGCGGCTTGAGAATGAAAGAATGCTTCTTGCTCTTAGG
CAGAAGGATTATGAATTGCTTGATCAACAGCAGCATTCTTCAAACAAAAG
GAGTGACCCGTCTTCCATTACAGGATAA back to topCoding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:21038936..21040363- >gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018807-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018807-mRNA2; organism=Citrus sinensis; type=CDS; length=1428bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21038936..21040363- (Citrus sinensis
ATGCTGGGGCTAGAAATGCCATTACACCCACAATCACAACCACAGCCACA
GCCGCAACCACAACAACAAAACCCTCAAACAAACCCACAAAACCCTCACC
ACTATCCTCAAATGGTTGCATTTTCACATCACCCTCATGATACTGAGTTG
CATCACACGCAAACACAATCCCAGCAATCCGTGAAACAGCAACATGGCTA
CTTATTTTCTTCCAAGCAAAAGCAGCAGCAGCTATCGCCGCTCAGTGATG
AAGATGAACTTGGATTAACCCCTGATGATAGTGCTGGAGATGGCAAGAGA
AAAGCATCTTCTTCTCCCTGGCAGAGAATGAAATGGACCGATAGCATGGT
TAAGCTGCTTATTCTGGCTGTTCTTTACATTGGTGATGAAGTTGGGTCCG
ACGGGAACGATAAGAAAAAGACTGGAGCTTTGTTACAGAAGAAAGGGAAA
TGGAAATCGGTTTCGAGGGCTATGCTGGAGAGAGGGTTTTACGTATCTCC
TCAGCAATGTGAGGACAAATTTAATGACTTGAATAAGAGATACAAAAGGG
TTAATGAAATCCTTGGCAAAGGAACTGCTTGCCGTGTTGTGGAGAATCAG
AGTTTGCTCGAGACGATGGATTTGACACCCAAAATGAAGGAGGAAGTGAA
GAAGTTACTCAACTCTAAGCATTTGTTTTTCAAGGAAATGTGTGCTTATC
ATAGTACTTGTGGTCATGGTAGTGGTACTGGCGGGACTCCTGGTGCCAAT
CACTCGCCAGAAGTAGCCACAGAGCCCTCTGTGGTTCAGCAACAACAAGC
ACAGCACCGGTGTTTGCATTCATCAGAGACTTCCCAACTTGGGGCCAATT
CAAATAGAGCTGAAATGGAAGGAACAAAATTGGTAAAAGTGGGGAGTGAT
GAAGAGGATGATGTGGAAGAGGACGAATCTGATGAGGATGATTATGACGA
CGACGACGACGACGAGGCAGTAGGAAATTCGAGGGGCCAACAAAATGGGC
ATGGACAGGAAGATGAAGATGAAAACGATGAGAAACTGTCGAGAAAAAGG
CAAAGACAGGGTAGCTTACCTGTACCAGTGTCACCAATGGTGCTGCAACT
ACGTTGTGAAGTGAGCAACGTGATTCAAGATGGGGCCAAGACTTCATGGG
AAAAGAAGCAGTGGATGAAGATGAAGTTACTGCAATTAGAGGAGCAGCAA
ATAAGCTACCAATACCAAGCTTTCGAGCTTGAGAAGCAGAGGTTAAAGTG
GGTGAAGTTTAGCTCCAAGAAGGAGAGGGAAATGGAGAAAGCAAAGCTGG
TGAATGAGCGGAGGCGGCTTGAGAATGAAAGAATGCTTCTTGCTCTTAGG
CAGAAGGATTATGAATTGCTTGATCAACAGCAGCATTCTTCAAACAAAAG
GAGTGACCCGTCTTCCATTACAGGATAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR044822 | Myb_DNA-bind_4 |
|
