gene-KPL71_018847-mRNA1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_ORYSJ (Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0810000 PE=2 SV=2) HSP 1 Score: 308.531 bits (789), Expect = 1.337e-98 Identity = 163/229 (71.18%), Postives = 201/229 (87.77%), Query Frame = 3 Query: 1497 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 2183
MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNPDEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++MLH LDN ++HVYFAEDREE KEI+S+ +K + D+IP IKRKTA+SYRELE RK+RVQ+LEKLY DM+L KEL+K GRKRKLRE+EI TS+ VYKWR++RKR
Sbjct: 1 MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNPDEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSMLHELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQRVQKLEKLYADMALQKELKKPGRKRKLREDEIENQTSRPVYKWRAQRKR 229
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_ARATH (Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana OX=3702 GN=At3g60360 PE=1 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 3.054e-85 Identity = 149/229 (65.07%), Postives = 187/229 (81.66%), Query Frame = 3 Query: 1497 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 2183
MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NPDEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT L + S RHVY+AEDREEA+E++ Q GR + +IP IK+K SYR+LEGRK R ++LEKLY DMS+ KELQKKGRKRKLR++E++ P KAVYKWR++RKR
Sbjct: 1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNPDEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASLQCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKSRAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPNGKAVYKWRADRKR 228
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_DICDI (Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum OX=44689 GN=utp11 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.078e-31 Identity = 90/224 (40.18%), Postives = 128/224 (57.14%), Query Frame = 3 Query: 1497 MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD-----FDDIPDHIKRK--------------------TAASYRELEGRKKRVQELEKLYMDMS 2075
MSS LR LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+NPDEF +KMI +K VDGVH E +E+++ +KTQDI Y+ K +++ KIE+L L +D+ P+ + +Y ++ KE+K+ S K D +PD IP K K TA SY+EL+ RK R +L K MD+S
Sbjct: 1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFKNPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQATLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPDAFNGSLSTIPKISKLKEGSLVVNPKTAPTLGQLEAMTATSYKELKERKLRRDQLFKAEMDLS 219
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_MOUSE (Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus OX=10090 GN=Utp11 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.277e-28 Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 3 Query: 1527 RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEA 1919
R H+ER+QP RK+ GLLEK KDY +RA YHKK++ +R L++KA +NPDEFY+KM + K DGVH + + T E+L LM+TQDI Y+ K +E KIE+L + LH LD +HV+F + ++E
Sbjct: 14 REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRAKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEV 146
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_SCHPO (Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp11 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 9.255e-28 Identity = 90/257 (35.02%), Postives = 134/257 (52.14%), Query Frame = 3 Query: 1500 SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSL----DNNPSSRHVYFAEDREEAKEIKSQS---------GRKDALPDFDDIPD------------HIKRKTAASYRELEGRKKRVQEL----EKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 2183
SS +NA R+ H+ERAQP R+K+GLLEK KDY RA+ Y K++ ++RL+EKA RNPDEFY +M KT +GV + E + + + ++KTQDIG++ ER KI+ L +H++ + N S +H F ++ +EAK GR + D I + H K K A+ EL R+KR ++L E++ +D L + ++ +K K VYKWR+ERKR
Sbjct: 3 SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDEFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMHTVGAHRNKNESRKHTIFVDNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNELTNQPFSGKLHSKLKEKAAT-ELLLRQKRDKKLAAAEERVELDRLLQGKGGRQKKK---------VVNGKPVYKWRNERKR 249
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_HUMAN (Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens OX=9606 GN=UTP11 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 5.330e-27 Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 3 Query: 1527 RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKEI 1928
R H+ER+QP RK GLLEK KDY +RA Y KK+E ++ L++KA +NPDEFY+KM + K DGVH ++ + T E+L LM+TQD+ Y+ K +E KIE+L + LH LD ++HV+F + ++E ++
Sbjct: 14 REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQF 149
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_RAT (Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus OX=10116 GN=Utp11 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.515e-27 Identity = 63/147 (42.86%), Postives = 96/147 (65.31%), Query Frame = 3 Query: 1500 SSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKEI 1928
++ R A+ +R ++ER+QP RK GLLEK KDY +RA Y KK+E ++ L++KA +NPDEFY+KM + K DGVH ++ + T E+L LM+TQD+ Y+ K +E KIE+L + LH LD +RHV+F + ++E ++
Sbjct: 3 AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNRHVFFFDTKKEVEQF 149
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_CHATD (U3 small nucleolar RNA-associated protein 11 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=UTP11 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.357e-21 Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 1497 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK--------------TKTVDGVHRLEGEANK-YTQEELMLMKTQDIGYV 1802
MSSLR+A+ RRAHKERAQP R++ G+LEK KDY +RA+ Y KK+ ++ L++KAA RN DEFYF M+ T TVDG NK + E + L+KTQD+GYV
Sbjct: 1 MSSLRHAIQRRAHKERAQPLERQRLGILEKKKDYRLRARDYKKKQAVLKSLRQKAAERNEDEFYFGMMSRKGPGSALTRGKGFTGTVDGDR-----GNKALSVETVRLLKTQDLGYV 112
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_DROME (Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster OX=7227 GN=CG1789 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.048e-20 Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 3 Query: 1497 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAED 1907
MSS +NA ++ H+ER QP+SR+ G LEK KDY RA KK+++++ L +A +NPDEFY MI +K + H + +++T E+L LM+TQD+ YV+ K ER KIE+L L +D +++ + F ED
Sbjct: 1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDED 141
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Match: UTP11_YEAST (U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP11 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.662e-17 Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 1497 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEI 1928
M+ L + + ++ H+ER+Q SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA RNPDE+Y M KT + H E E + +++ L+KTQD YV Q E K+EK L S H F + RE+ E
Sbjct: 1 MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQLMF---KSSGNHTIFVDSREKMNEF 146 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018847-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018847-mRNA1; organism=Citrus sinensis; type=mRNA; length=2413bpback to top protein sequence of gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=229bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:21323137..21326606+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3470bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21323137..21326606+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:21323137..21326606+ >gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018847-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018847-mRNA1; organism=Citrus sinensis; type=CDS; length=690bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21323137..21326606+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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