Transcript Overview
Name gene-KPL71_018873-mRNA1 Unique Name gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 Type mRNA Organism Citrus sinensis (Sweet orange) Sequence length 2610 Product peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon1 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon2 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon3 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon4 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon4_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon5 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon5_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon6 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-exon6_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS2 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS3 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS3_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS4 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS4_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS5 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS5_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS6 rna-gnl|WGS:JAHMIT|DVS6B01770.t03-CDS6_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018873-mRNA1 vs. DB:SwissProt
Match:
PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278529 PE=3 SV=1)
HSP 1 Score: 60.4622 bits (145), Expect = 5.147e-9
Identity = 43/153 (28.10%), Postives = 63/153 (41.18%), Query Frame = 3
Query: 438 YLALLAKYPVATKAVTSALLTLIGDLICQLTVEQVPS------LDLKRXXXXXXXXXXXXXPTLHFWYSHLNKMVTMTGASGAFLRLLTDQ--------------------------------EWFSSVVANWQLWIPFQFLNFRFVPPQFQV 782
YL LL +P+ TK++++ L GD++ Q + LD KR + +G+ GP LH+WY L+ MV G S ++L DQ E F +V NW +W Q +NF VPP +V
Sbjct: 8 YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKINWLIWPAAQIINFSLVPPNLRV 160
BLAST of gene-KPL71_018873-mRNA1 vs. DB:SwissProt
Match:
PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290631 PE=3 SV=1)
HSP 1 Score: 60.077 bits (144), Expect = 6.506e-9
Identity = 44/162 (27.16%), Postives = 71/162 (43.83%), Query Frame = 3
Query: 438 YLALLAKYPVATKAVTSALLTLIGDLICQ---LTVEQVPSLDLKRXXXXXXXXXXXXXPTLHFWYSHLNKMVTMTGASGAFLRLLTDQ--------------------------------EWFSSVVANWQLWIPFQFLNFRFVPPQFQVNEVSPFLPGCSL 818
YL+ L KYPVATKAVTS L LI D + Q L+ ++ D KR+ + G + GP H+W+ +L+K AF++L DQ +W ++ V++ +W F+NF ++ +V F+ C++
Sbjct: 15 YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVT----FMNVCNI 172
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018873-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 2
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 5.15e-9 / Id = 28.10 Expect = 6.51e-9 / Id = 27.16 Sequence PX24B_DICDI PX24D_DICDI
Match Name E-value Identity Description
PX24B_DICDI 5.147e-9 28.10 PXMP2/4 family protein 2 OS=Dictyostelium discoide... [more] PX24D_DICDI 6.506e-9 27.16 PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 2.5E-9 / Score = 37.2 Score = Score = Sequence PF04117 PTHR11266 mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
IPR007248 Mpv17/PMP22 PFAM PF04117 Mpv17_PMP22 coord: 213..243 IPR007248 Mpv17/PMP22 PANTHER PTHR11266 PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 coord: 125..217 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 92..114
Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018873-mRNA1; organism=Citrus sinensis; type=mRNA; length=2610bp back to top protein sequence of gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=270bp back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:21471419..21476690-
Legend: exon polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=5272bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21471419..21476690- (Citrus sinensisCTTTAATTACTTTTGAAACTGAGAGGGTAAAGCTTCGCAATTTTCAAGGA
AAAATGGCGGCAACTTCTTTGTCTCTTACTCTTAAATCCCCACTCTTGTC
CCGTTTCCTGGGATTCTCTCGCAAACCCATTTCTCATACTGGCCGGCAAA
TTCGTACTCCCGCAAACCAAGCTCAAATTACAGCGTTCAGGGGCTGTTCA
TCTTTTTCTTTGACTTCTTATACTTCGAGTTTTGGTCAAGGAACTGTTGT
TAAGGATCTGGGTGGTTCTAAAATTAGATTTGGGCAACTGGGCTTTGGTC
GTGTTCGCGTTTCAGCGGTCTCCGATGGCGGCTCGGGTGGTGGTACCGGT
GGTGGGTCAGGAGGCTCTGGGGATGGCAATTCTGGAGGCAGAAGTGAAGG
CGGTTCTGGTGGGAGTAACTGGTCCTTCCTTCAATG GTATTTAGCTCTTCTT
GCCAAATATCCTGTGGCAACAAAAGCCGTGACATCTGCACTTTTGACTTT
AATTGGAGACTTAATCTGCCAG CTCACCGTTGAGCAAGTGCCTTCA
CTGGACCTCAAAAGGACATTCCTCTTCACTTTGCTGGGGCTGGTGTTAGT
TGGACCCACATTGCATTTCTG GTATTCACATCT
GAATAAAATGGTGACAATGACTGGAGCATCAGGTGCATTCCTACGCCTTC
TAACAGATCAG GAG
TGGTTTTCTTCTGTTGTAGCTAATTGGCAACTGTGGATACCTTTCCAATT
CCTCAACTTTCGATTTGTCCCACCACAATTCCAG GTCAATGAA
GTCAGCCCATTTTTGCCGGGCTGTAGTTTAATTACGGTCTCAATCCTTCC
TAAGAAGTTTGTCAATGCAAGTCCTTGA back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:21471419..21476690-
>gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018873-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018873-mRNA1; organism=Citrus sinensis; type=CDS; length=813bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21471419..21476690- (Citrus sinensis back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR007248 Mpv17_PMP22
Vocabulary: Cellular Component
Term Definition
GO:0016020 membrane
