gene-KPL71_018891-mRNA2
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.392e-14 Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 1 Query: 436 PASKYSIEALEKIKVEGC---SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PASK +IE+L ++++ C ++ C +C EV + G + MPC HI+H DC+V WL + CP+CRF+L Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFEL 259
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.109e-14 Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 436 PASKYSIEALEKIKVEGC---SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PASK +IE+L ++++ C S+ C +C E+ + ++A MPC H++H DC+V WL + CP+CRF+L Sbjct: 174 PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFEL 243
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.511e-14 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 433 APASKYSIEALEKIKVEG----CSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PASK +I+AL +KV C +C++ ++GS +MPC H++HQDCL+ WL+ + CP+CRF+L Sbjct: 189 PPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.614e-13 Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 Query: 436 PASKYSIEALEKIKV---EGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PA+K +IEALE +V EG C +C + M G ++PC H YH DC+V WL + CP+CRFQL Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.200e-12 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 433 APASKYSIEALEKIKVEGCSQQ----YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PASK +IEAL + + + C +C++ +EG++A +MPC H+YH+DCL+ WL+ + CP+CR +L Sbjct: 197 PPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHEL 268
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.375e-12 Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 436 PASKYSIEALEKIKVEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PASK SI+A+ ++++GC + CVICLE K MPC H +H C+ WL CP+CR+++ Sbjct: 92 PASKASIDAMPIVEIDGCEGE-CVICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEM 157
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.503e-12 Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 436 PASKYSIEALEKIKVEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 PA K ++EAL +K+E C +CL+ ++ GS+A +MPC H +H C++ WL+ S CP+CRF+L Sbjct: 179 PAKKEAVEALPTVKIEEVVS--CSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFEL 243
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.031e-11 Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1 Query: 406 SINTQVLKLAPASKYSIEALEKIKVE----GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 S T PA + +I+AL IK+ S C +C + + GS+A +MPC+HIYH DC+V WL + CP+CR +L Sbjct: 154 SAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.124e-11 Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 412 NTQVLKLAPASKYSIEALEKIKVEGC-----SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 N + + PASK +IEAL I+++ SQ +C +C E S A MPC+HIYH DC++ WL + CP+CR +L Sbjct: 166 NLRSCEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHEL 245
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Match: RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.986e-11 Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 406 SINTQVLKLAPASKYSIEALEKIKVE----GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 636 S T PA K SI+AL IK+ S +C +C + + S+A +MPC HIYH DC+V WL + CP+CR +L Sbjct: 150 SSGTHHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKEL 230 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018891-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018891-mRNA2; organism=Citrus sinensis; type=mRNA; length=642bpback to top protein sequence of gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=213bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:21580160..21580801+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=642bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21580160..21580801+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:21580160..21580801+ >gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018891-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018891-mRNA2; organism=Citrus sinensis; type=CDS; length=642bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21580160..21580801+ (Citrus sinensisback to top |