Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01833.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01833.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01833.t01-exon2 rna-gnl|WGS:JAHMIT|DVS6B01833.t01-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01833.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01833.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01833.t01-CDS2 rna-gnl|WGS:JAHMIT|DVS6B01833.t01-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH106_ARATH (Transcription factor bHLH106 OS=Arabidopsis thaliana OX=3702 GN=BHLH106 PE=2 SV=1)
HSP 1 Score: 258.07 bits (658), Expect = 3.227e-77
Identity = 144/222 (64.86%), Postives = 179/222 (80.63%), Query Frame = 3
Query: 1587 MQPENSE--LYRFLAQNGVGYYGFPGSA-CEXXXXXXXXXXXXXXXXXPLEVSGVTETTPEDRALAALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVES--FPSETDEITVLASSDYSSDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD-HSIESVHFLQNALKSLLE 2234
MQPE S+ LY FLA N VG G+ S + SS+S +PL +SG+ ET +DRALAAL+NHKEAE+RRRERINSHLNKLR++LSCNSK DKA+LLA+VVQRVRELK+QT+E ++ + PSETDEI+VL DYS+DG +IFKASLCCEDRSDLLPD++EILKSL++KTL++EMVT+GGR R+VL++AA+K+ H +ESVHFLQNALKSLLE
Sbjct: 1 MQPETSDQMLYSFLAGNEVGGGGYCVSGDYMTTMQSLCGSSSSTSSYYPLAISGIGETMAQDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQTLLPSETDEISVLHFGDYSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLE 222
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH107_ARATH (Putative transcription factor bHLH107 OS=Arabidopsis thaliana OX=3702 GN=BHLH107 PE=3 SV=1)
HSP 1 Score: 210.305 bits (534), Expect = 1.888e-60
Identity = 106/165 (64.24%), Postives = 138/165 (83.64%), Query Frame = 3
Query: 1749 TTPEDRALAALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVESFPSETDEITVLASSDYS--SDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD-HSIESVHFLQNALKSLLE 2234
T ED+ALA+L+NHKEAE++RR RINSHLNKLR +LSCNSK DK++LLA+VVQRV+ELK+QT+E+T+ E+ PSETDEI+VL D S D +IFK S CCEDR +LL D++E LKSL ++TL ++M T+GGR RNVL++AA+K+ H ++SV+FLQNALKSLLE
Sbjct: 36 TVYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITD-ETIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLE 199
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH030_ARATH (Transcription factor bHLH30 OS=Arabidopsis thaliana OX=3702 GN=BHLH30 PE=1 SV=1)
HSP 1 Score: 148.288 bits (373), Expect = 2.706e-37
Identity = 79/135 (58.52%), Postives = 105/135 (77.78%), Query Frame = 3
Query: 1764 RALAALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVESFPSETDEITV-LASSDYSSDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 2165
+ALAA K+H EAE+RRRERIN+HL KLRSIL +K DKASLLA V+Q V+ELK +T ++E P+E+DE+TV + + DG + KASLCCEDRSDLLPD+I+ LK++ LKTLK+E+ T+GGR++NVL +
Sbjct: 170 KALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISETNLVPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVLFV 304
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH032_ARATH (Transcription factor AIG1 OS=Arabidopsis thaliana OX=3702 GN=BHLH32 PE=1 SV=1)
HSP 1 Score: 140.969 bits (354), Expect = 5.061e-35
Identity = 75/139 (53.96%), Postives = 107/139 (76.98%), Query Frame = 3
Query: 1764 RALAALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVESFPSETDEITVLASSDYSSDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD 2180
+ALAA K+H EAE+RRRERIN+HL KLRSIL +K DKASLLA V+Q ++ELK QT ++T+ P+E D++TV +S + +G L+ +AS CC+DR+DL+ D+I LKSL L+TLK+E+ T+GGR++N+L ++ E D
Sbjct: 128 KALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTECDDLTVDSSYN-DEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNILFLSREYD 265
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH051_ARATH (Transcription factor bHLH51 OS=Arabidopsis thaliana OX=3702 GN=BHLH51 PE=2 SV=1)
HSP 1 Score: 122.094 bits (305), Expect = 1.737e-29
Identity = 61/138 (44.20%), Postives = 99/138 (71.74%), Query Frame = 3
Query: 1761 DRALAALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVESFPSETDEITVLAS--SDYSSD-GTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 2165
++A + ++H+ AEKRRR+RINSHL LR ++ + KLDKA+LLA V+++V+ELK++ E + P+E DE+TV SD+ S+ T+IFKAS CCED+ + + +II +L L L+T+++E++++GGR+R I+
Sbjct: 58 EKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDLPTEADEVTVQPETISDFESNTNTIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMRINFIL 195
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Match:
BH131_ARATH (Transcription factor bHLH131 OS=Arabidopsis thaliana OX=3702 GN=BHLH131 PE=2 SV=1)
HSP 1 Score: 76.2554 bits (186), Expect = 8.850e-14
Identity = 46/146 (31.51%), Postives = 81/146 (55.48%), Query Frame = 3
Query: 1737 GVTETTPEDRALA---ALKNHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEVESFPSETDEITVLASSDYSSDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 2165
G + T P+ + + A K H +AE+RRR RINS LR+IL K DKAS+L V+ ELK+ + ++ + PS D + + D+ ++ + + C DR L+ ++ E +K++ K +++E++T+GGR + L +
Sbjct: 76 GFSVTKPKSKTESKEVAAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYFNELKKM---VQDIPTTPSLEDNLRL----DHCNNNRDLARVVFSCSDREGLMSEVAESMKAVKAKAVRAEIMTVGGRTKCALFV 214
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018936-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 6
500 1000 1500 2000 2500 3000 Expect = 3.23e-77 / Id = 64.86 Expect = 1.89e-60 / Id = 64.24 Expect = 2.71e-37 / Id = 58.52 Expect = 5.06e-35 / Id = 53.96 Expect = 1.74e-29 / Id = 44.20 Expect = 8.85e-14 / Id = 31.51 Sequence BH106_ARATH BH107_ARATH BH030_ARATH BH032_ARATH BH051_ARATH BH131_ARATH
Match Name E-value Identity Description
BH106_ARATH 3.227e-77 64.86 Transcription factor bHLH106 OS=Arabidopsis thalia... [more] BH107_ARATH 1.888e-60 64.24 Putative transcription factor bHLH107 OS=Arabidops... [more] BH030_ARATH 2.706e-37 58.52 Transcription factor bHLH30 OS=Arabidopsis thalian... [more] BH032_ARATH 5.061e-35 53.96 Transcription factor AIG1 OS=Arabidopsis thaliana ... [more] BH051_ARATH 1.737e-29 44.20 Transcription factor bHLH51 OS=Arabidopsis thalian... [more] BH131_ARATH 8.850e-14 31.51 Transcription factor bHLH131 OS=Arabidopsis thalia... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018936-mRNA1; organism=Citrus sinensis; type=mRNA; length=3406bp back to top protein sequence of gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=237bp back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:21917464..21921340+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=3877bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21917464..21921340+ (Citrus sinensisaaaataatatttaggaaaTTCATTAGCATCTGCACGACATCTGAGGGCAG
ATTATGCCACAAGCTAGCCAGGTTCATATCCCACAGCCTACTAAATTTTG
ACACTGCTAATTCCCTAAAGGTAGTAGAGAAGTGGAAATTCATAATAAGA
GTAGGGGTGTTTGTGGATCGAATTTTGTggattggacatcaatccatatc
tgATGTATGATTTTacagattataaattttcaattcaatccaattcaCGG
ATTGGTAAAATTCAAGGcaaatccaatccaccaattTGCGGATTGGTTTg
tggattaaaattttttaactatggcaaatctacaaactaattaaattaaa
aaaatctaatttaaaaataattttactaccgatcaagtttaaaattgaaa
atattaaaataaattaattgtttgaataaagttagaaaaatacattcaaa
gtttcaaaatataacacaccaaaataaaaaatctcatttgtttagataaa
cacatgaaaattaaattatgaactTGATAGCTTGGATGATTTGTCAAAAT
ATCCACCtctaatttgtattttgtattttaacaTGAACAAGTAGACATAA
TTGAAATagattacaaatataaatattttatttattatagttAACGAATA
TTTACTCTTACTTTCTATCCCATCAAATGCTATCAAGTTTCATCAAATAT
ATTCTCGTCatcaaatgaattaaatgGATCAGATTGAATTGTGAACACCC
ATAATTGaaagttttaatttccaaatcaaacaaaatttttaaggcGCCAA
GGAGTAAATTGACAACCAACATCTTCTAGCAAGAGATTATGCCACTTCTC
TATCAAAAGCCAATTCGATTACAAGAATGTTTGTCATTAATTGAGTATAA
ATGATCCTGGTATCTGATCTAAATTACCCAAGCATTCACTCAAAACAGTT
CCGTAACAGGACACCACAAGTCGAACGCTTTTGACCATTGGGAGTGCTTT
GACTATAGgaatatttacaagataaaacataattatctTAGTTAATCTTG
TAATCGAATAATGAAAGGGaacataaacataaataaataaaagaagtaaa
aaaaaaggggtctTTGCTAGAAATGTGAGTAGTAGTGATCATGAGAATAT
CCTACTGCTCAAAATACACTCATCAAGACATGAACTCGGTCGAGCCATTA
GTCCATCAAAGAGTGATTTGTAATTTGACTTTAATTAAGAAACATTGAAA
AGATGAaataatagaattatcttAATTAGTCGCGTAAACCAATTATGATA
gagaacattaaaaaataagaaaaatgtggaaaatgagaaaaaaaaaaaaa
aaagggaggcCGGTCTTCAATAGAAACAGGAGTGATCGTCTAAGGGACCC
AGTTGGAAAGTGAACGcaactttttttgttttccaaattcgGAGATAAAA
ACCCTAAAGACAAAAACCACCGAAAGCATATTgaaatcattttcatattc
AAAACTTAGCACTTCCATTTCATTAGCCCACATTTCCATTTGCTTAGTCA
AACAAACATAACCCACAATCAAAAACAATCATCATCATGCAGCCGGAAAA
CTCAGAGCTCTACCGGTTTCTTGCCCAAAACGGGGTCGGGTATTATGGGT
TCCCTGGGAGTGCTTGTGAATTCTCCTCGATGATGCAGCAGAGCTTCTGT
AGCTCCTCCTCTTATAGTTTCCCTTTGGAGGTGTCAGGTGTTACTGAAAC
GACGCCGGAGGATCGGGCACTTGCTGCTTTGAAGAATCATAAAGAAGCTG
AgaagaggagaagagagagaatcaaTTCTCATCTTAATAAGCTTAGAAGT
ATTCTTTCTTGCAACTCTAag cTAGACAA
GGCTTCACTCCTTGCAAGGGTGGTTCAGCGGGTGAGAGAATTGAAAGAAC
AAACCATTGAACTAACAGAGGTCGAATCATTCCCATCAGAAACCGATGAA
ATCACTGTGCTTGCATCCAGTGATTACTCCAGCGACGGGACTTTGATTTT
CAAGGCTTCTTTGTGCTGCGAGGATCGCTCTGATCTTTTACCCGACATCA
TCGAGATTTTAAAATCCCTCCATCTAAAGACACTGAAATCAGAAATGGTG
ACACTCGGTGGAAGAATCCGCAACGTTCTTATCATCGCCGCTGAGAAAGA
TCACAGCATCGAATCAGTCCATTTCTTGCAAAATGCACTCAAGTCTTTGC
TAGAAAGATCAAATTCTAGTGACCGGTCCAAAAGAAGACGGGTATTAGAT
CACAAAATAATGATccaataa back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:21917464..21921340+
>gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018936-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018936-mRNA1; organism=Citrus sinensis; type=CDS; length=714bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:21917464..21921340+ (Citrus sinensis back to top
