Transcript Overview
Name gene-KPL71_018956-mRNA1 Unique Name gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 Type mRNA Organism Citrus sinensis (Sweet orange) Sequence length 4418 Product hypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon2 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon3 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon4 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon4_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon5 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon5_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon6 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon6_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon7 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon7_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon8 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon8_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon9 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon9_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon10 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-exon10_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS2 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS3 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS3_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS4 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS4_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS5 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS5_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS6 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS6_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS7 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS7_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS8 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS8_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS9 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS9_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS10 rna-gnl|WGS:JAHMIT|DVS6B01853.t01-CDS10_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018956-mRNA1 vs. DB:SwissProt
Match:
T214A_XENLA (Transmembrane protein 214-A OS=Xenopus laevis OX=8355 GN=tmem214-a PE=2 SV=1)
HSP 1 Score: 68.1662 bits (165), Expect = 5.222e-10
Identity = 75/285 (26.32%), Postives = 118/285 (41.40%), Query Frame = 2
Query: 1499 VVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVTA--WIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAREGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKD---ADKRRKLILRKLSQGRGF 2335
+ L VL KP + + LP E + Q + A W + Q DL+ GL +W+ ++ P+L G + P A IL L R +L + + KG ++ P L+ F P SL E +YP LK +A +P S + + E +L +D L ++P + W LY +L S +L+ L + W +S K +RET+ SFK N E + + + LKD D + +L K+ +G GF
Sbjct: 214 ICLQAVLLDKPKTVTNNLPKYLELLRSQVNRPMKCLAVMWAVGQAGFTDLSEGLKVWLGLMFPVL-GVKTLTPYA---ILYL---------DRLLLAHSNLTKGFGMIGPKDFFPLLDFAFMPNNSLTSSQQENLRNLYPRLKVLAFGATPESTLHTYFPSFLSRVTPSCPAEMRKELINSLTD----CLNKDPLSFSVWRQLYTKHLSQSSFLLQHLVETWDSNSKAMRKS--VRETVHSFKVTN------GEFSGKGSSLKDLEACDAACQALLHKM-KGSGF 472
BLAST of gene-KPL71_018956-mRNA1 vs. DB:SwissProt
Match:
T214B_XENLA (Transmembrane protein 214-B OS=Xenopus laevis OX=8355 GN=tmem214-b PE=2 SV=1)
HSP 1 Score: 59.3066 bits (142), Expect = 2.755e-7
Identity = 69/282 (24.47%), Postives = 113/282 (40.07%), Query Frame = 2
Query: 1499 VVLAMVLRRKPDVLISLLPIKRE--NPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAREGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGF 2335
+ + VL KP + S LP E K W + Q D GL +W+ ++ P+L G + P A IL L R +L + + KG ++ P ++ F P SL E +YP LK +AL +P S + + + +A ++ +E L ++ + W LY +L S ++L+ L + W +S K +RET+ SFK N + K + L+ D + +L K+ G GF
Sbjct: 212 ICIQAVLLDKPKTVTSNLPKYLELLRSHLNRPMKCLTVMWAVGQAGFTDFTEGLKVWLGLMFPVL-GVKNLTPYA---ILYL---------DRLLLAHSNLTKGFGMIGPKDFFPILDFAFMPNNSLTPSQQENLRNLYPKLKVLALGATPEST----LHTYFPSFLSRATPSCPAEMRKELIHSLTDCLNKDSLSFSVWRQLYTKHLSQSSLLLQHLVETWDSNSRAMRKS--VRETVHSFKVTNGEFSGKGSSSKD---LEACDAACQALLHKMKSG-GF 470
BLAST of gene-KPL71_018956-mRNA1 vs. DB:SwissProt
Match:
TM214_BOVIN (Transmembrane protein 214 OS=Bos taurus OX=9913 GN=TMEM214 PE=2 SV=1)
HSP 1 Score: 58.151 bits (139), Expect = 5.165e-7
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 2
Query: 1610 WIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAREGIP-DLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGF 2335
W + Q +L GL +W+ ++LP+L G S +P A + ++R+L L++ + KG ++ P L L+ + P SL E+ +YP LK +A P S + A G P ++ +E L +P W LY +L S ++L L W+ K K L+ET+ SFK N+ L+K + + + D+ + L Q RGF
Sbjct: 258 WALGQAGFTNLTEGLRVWLGIMLPVL-GIKSLSPFA----IAYLDRLL--------LMHPNLTKGFGMIGPKDLFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPES-----TLHTYFPSFLSRATPGCPLEMKKELLRSLTECLMVDPLSTSVWRQLYPKHLSQSSLLLEHLLRSWERIPKKTQKS--LQETIQSFKLTNQDLLRKGGGSNQDVVTCDSACK-----SLLQQARGF 476
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018956-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 4000 Expect = 5.22e-10 / Id = 26.32 Expect = 2.76e-7 / Id = 24.47 Expect = 5.16e-7 / Id = 25.82 Sequence T214A_XENLA T214B_XENLA TM214_BOVIN
Match Name E-value Identity Description
T214A_XENLA 5.222e-10 26.32 Transmembrane protein 214-A OS=Xenopus laevis OX=8... [more] T214B_XENLA 2.755e-7 24.47 Transmembrane protein 214-B OS=Xenopus laevis OX=8... [more] TM214_BOVIN 5.165e-7 25.82 Transmembrane protein 214 OS=Bos taurus OX=9913 GN... [more]
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
500 1000 1500 2000 2500 3000 3500 4000 Expect = 3.0E-20 / Score = 72.3 Score = Score = Score = Sequence PF10151 PTHR13448 mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
IPR019308 Transmembrane protein 214 PFAM PF10151 TMEM214 coord: 82..551 IPR019308 Transmembrane protein 214 PANTHER PTHR13448 TRANSMEMBRANE PROTEIN 214 coord: 27..566 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 22..81 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 22..105
Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018956-mRNA1; organism=Citrus sinensis; type=mRNA; length=4418bp back to top protein sequence of gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=577bp back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22030538..22037602+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=7065bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22030538..22037602+ (Citrus sinensisAACAacagtttttttaaaattcaagttttctGTACGAATATCAATAAGTA
TAagtatttatataatataattttttttaaaataaatttaacaagatGAA
AATAGAGAATTATTATATAGATACAATAATGACTTTTTCATCCATACCTT
AAtctgtaatttaattgtattCACACACAATTAACAGCTCGAATATTAAT
TATCTCCCATGATAATCACCCCACGCTGGTTCCAAAAAATTGCCATTCCT
ATCACAACAGGGCAAAACCAACCAAAATAAGGATCCTACAACtcttaaaa
agtttatttaaagGCTAAATCATATTAGGAAATCAAGATAATGCTGACTA
AGTAAAgatatgttaaataaaatccaCGTAATGCATCCAAAAAAATATCT
AACTCAAGTAATTATGGTATGTTTAAGTTATTCGTCCAATAACGTAAGGC
CAAAAACGTCAATTAACCAAACATAAATAATCCCACGTGCCACGTGTCGT
CCAACACAGAGTTCCTCTCCTTGTCGTCTcctcaaataagaaaaaccCGA
CCCGCCCTCTCTCTGTCTATAACTCTTAACTGTGATCTCTCTTCGACGTC
CACACTGATTCTTCTACGTCTctacagaaaacaaaaactgTCCGTTTCAA
AGAGaacttgaaacaaattaaattttgttttattttctttttcacgaCAG
TTTCAAGTCATGGACGAGAATTCAGCTCTTATCGAGCAAATTCTGAGGGA
GGATGAGTTAGAGTATAGAGGATTGAGTAGAACTTACAATAAGGATGAGG
AGTGGCAAACGGTGTCGTATAAGAAAAGGCACTCGAAGCAGCCGAATTCC
GATAATCCATTGCCCGATCGCCGACCTGACGACGGCGCCACCACATCCGA
CGTGTTCCGGGCCATCGAGGAGCACTCGGAGGAGCGGCGTCGTCGAATGT
CGGTGCCTCAGGTGGCTGCACCCGTCACCGGAGAGGGATCGAAGAGGCAT
TCTGATGAGGATGACGACAGTGATGCAGAGGTGTCCGCTGCTGTGGTGGA
GGTTAAGAAGGTGAAGCAGAAGAAGCCGAAGAAGCCGAAAGTTACGGTGG
CTGAGGCGGCGGCGAGGATCGACGCCGGTGATCTTGGCGCATTCCTTGTT
GACATAACT GGATCATACGAGAAACAGGAAGATATACAGCTGATG
CGATTCGCTGATTACTTTGGTCGGGCGTTTGCTTCAGTCAGCTCATCTCA
GTTCCCTTGGTTGAAGACATTCCGGGAGTCCACTGTCGCCAAGATGGTTG
AT ATCCCGCTTTCGCAT
GTTCCTGAAGATGTATATAAGATGTCAGTTGACTGGCTTAACCAACGATC
TTTTGATGCGCTTGGGTCCTTTGTGCTATGGTCATTGGACAGCATTCTTG
CTGACCTTGCAAGTCATCAAGGAACTGGAAAGAGTTCTAAGAAGGTTGTT
CAACAAGCTTCATCAAAGTCTCAG GTAGCCATATTTGTGGTTTTGGCCATGGTTCTGAGACGTAAGCCTGATG
TGTTGATCAGCTTATTGCCTATCAAGAGAGAAAATCCAAAATATCAAGGA
CAAGATAAGCTTCCGGTCACCGCCTGGATAATTGCTCAG ACTGCCCAAGGAGAT
TTGGCGGTGGGGCTATACATGTGGGTGCGAGTTCTTTTGCCCATGCTGAG
TGGGAAGTCAAGTTGTAATCCGCAGGCCAGAGACTCGATTTTACAGTTGG
TGGAGAG AATATTATCCCTCCCAAAAGCACGCACTAT
TTTGATAAATGGTGCTGTCAAAAAGGGAGAGCGCCTTGTGCCACCGTCAG
CTCTTGAGGTTTTGATGCGAGTCACTTTTCCAGCACCATCTCTTCGAATT
AAG GCAA
CTGAAAGGTTTGAAGCTATTTATCCAATATTGAAGGAGGTTGCCCTAGCT
GGTTCCCCTGGGAGCAAGGCAATGAAACAAGTTGCACAGCACATATTGAC
CATTGCCATCAAAGCTGCCAGAGAAG GCATTCCTGACCTATCAAGGGAGGCAagtgatatt
tttatatgggCTTTGACTCAGAATCCTGAGTGTTACAAGCAATGG GATATGCTTTATCTGGATAATCTTGAAGCAAGTATT
GTTGTCCTGAGAAAGCTGTCTGATGAATGGAAGGAGCACTCTGTTAAAGA
TCCTAAGGGTGACCGTTTGAGGGAAACTCTAAGTAGTTTCAAGCAGAAG AATGAGAAAGAGTTGAAGAAGGCAGAAGA
TGCAACCCGCATTGCGTTATTGAAGGATGCAGACAAGCGTCGCAAGCTGA
TATTGAGAAAATTGTCGCAAGGCCGTGGATTTATGAAACACATGGTTATT
GTCTCTGCTGCAGTGGCTGTGGGTGCAGTTGTTGTGTCCCAAAACATGCA
ATCTTGGGACATAAAGAAAGTGTtggaaatatttaattga back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22030538..22037602+
>gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018956-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018956-mRNA1; organism=Citrus sinensis; type=CDS; length=1734bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22030538..22037602+ (Citrus sinensis back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR019308 TMEM214
