gene-KPL71_018963-mRNA1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.506e-29 Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 3 Query: 144 RRRIGVIAVTASTLLAREAIF---REDIANAFEFRMVA-----PDQTVEQAESGIRYHAQSLLHVKALL-ESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
RRR V+ + TL+ + F R ANA +F P++TVE A+ G+R +A+++ +K ++ E + W E K LR S++++KQD Y +I KP +RP R LYS LFN + K+DYAARD D ++V + Y N+V LD I R+
Sbjct: 36 RRRRDVLLTISGTLIPQLFFFDRKRSSSANAADFFNFGAPPPEPERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 3.582e-13 Identity = 41/139 (29.50%), Postives = 80/139 (57.55%), Query Frame = 3 Query: 156 GVIAVTASTLLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
G+ A T ++ AR+ F + + F + + P + +A + A+ +++VK L++ ++W Q LR+ ++ L+ D+ T+I++KP E+ L+ L + LF+ + LDYAA+ K S+ + Y V AL+ +L++L
Sbjct: 91 GLPAGTDNSDQARD--FALALKDRFYLQPLPPTEAAARA----KESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2) HSP 1 Score: 64.3142 bits (155), Expect = 4.307e-11 Identity = 33/115 (28.70%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 228 FEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
F + ++P + +A+ A+ +++VK+ ++ ++W Q LR ++ L+ D+ T+I+ KP E+ L+ L + LF + LDYAAR K + + Y V +L+++L++L
Sbjct: 119 FYIQPLSPTEAAARAKD----SAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 9.310e-10 Identity = 30/102 (29.41%), Postives = 60/102 (58.82%), Query Frame = 3 Query: 267 QAESGIRYHAQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
+A + ++ AQ ++++K L++ ++W Q LR ++ L+ D+ T+I +KP E+ L++L LF+ + LD+AA+ K T + + AL +L++L
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 9.513e-10 Identity = 30/102 (29.41%), Postives = 60/102 (58.82%), Query Frame = 3 Query: 267 QAESGIRYHAQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
+A + ++ AQ ++++K L++ ++W Q LR ++ L+ D+ T+I +KP E+ L++L LF+ + LD+AA+ K T + + AL +L++L
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 4.446e-9 Identity = 34/108 (31.48%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 255 QTVEQAESGIRYH--AQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
Q + AE+ R AQ ++++K L+E + W + LR ++ L+ D+ T+IN+KP E+ L+ L LF + LD+AA+ K + Y AL +L++L
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2) HSP 1 Score: 58.5362 bits (140), Expect = 4.446e-9 Identity = 34/108 (31.48%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 255 QTVEQAESGIRYH--AQSLLHVKALLESESWSEAQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVAKLDYAARDKDTSRVHQCYENVVVALDSILSRL 572
Q + AE+ R AQ ++++K L+E + W + LR ++ L+ D+ T+IN+KP E+ L+ L LF + LD+AA+ K + Y AL +L++L
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018963-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 7 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018963-mRNA1; organism=Citrus sinensis; type=mRNA; length=772bpback to top protein sequence of gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=184bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22069048..22070382+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1335bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22069048..22070382+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22069048..22070382+ >gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018963-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018963-mRNA1; organism=Citrus sinensis; type=CDS; length=555bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22069048..22070382+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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