Transcript Overview
Name gene-KPL71_018972-mRNA1
Unique Name gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1
Type mRNA
Organism Citrus sinensis (Sweet orange)
Sequence length 4876
Product putative ribonuclease H protein
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon2 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon3 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon4 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-exon4_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS2 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS3 rna-gnl|WGS:JAHMIT|DVS6B01869.t01-CDS3_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide
gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018972-mRNA1 vs. DB:SwissProt
Match:
RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 286.189 bits (731), Expect = 9.220e-82
Identity = 181/536 (33.77%), Postives = 265/536 (49.44%), Query Frame = 1
Query: 1 FIWSGSAEHQKMSLVSWDMVCTPKSKGGLGFKKLEIMNHALIMKNNWSLITEPTKLSNKVLLTKYGV-QMDEVPTSLPTRYGSPLWKAMG-NIWKKTRGGIRWNIGDGETVSFWGDCWVASLKPLAECVIQPIPNELLNKRAVDFLDGSGNWNWPLFSHLVPSNVLLKIAAIHPPAAAFGNDSYFWGGSPNGMFSVRAAYELL--DESMGSGSQIDWRLAWNWKGPHSIRVFLWLLLHGRLKTREELNRRHITVSIYCDRCGGSVEDILHPLRDCVTARRVWSQLLPSQYHPNFFLLQLKDWIHMNLGRGHITASQEYWRVCFGVTVWRLWYWRNDVLFNHGSWDSSFIVTDIKARTYEILRCIKQPLTV--KQKKVEKMIRWRAPIWPSVSLNTDGARKGF-GQTGAGGLLHDFTGNWIMGFIVNLGTCSVLSAELWGLLHGLRMAWENGFRRVQVGVDNKSVVHLLTMASVPENENATLIKAIRKLLEQDWIVQLEHVYREANCAADFLATYSLNSLIGLHVLLSPPPGIVGIL 1587
F+W +AE +K LV W VC+PK +GGLG + + MN ALI K W L+ E L VL KY V ++ + +P S W+++ + G+ W GDG+ + FW D WV+ KPL E P + A D W++ +N L++ A+ D W S +G FSVR+AYE+L DE + W + P ++ FLWL+ + + T EE +RRH++ S C C G VE +LH LRDC +W +++P + FF L +W++ NLG W F V +W W WR +F + V +K E+ R + V Q +VE+MI W +P V +NTDGA +G G AGG+L D TG W GF +N+G CS AELWG+ +GL AWE RV++ VD++ +V L + + L++ L++DW+V++ HVYREAN AD LA Y+ + +G H P + +L
Sbjct: 73 FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG-KPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLG-DRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENT-KCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLL 605
BLAST of gene-KPL71_018972-mRNA1 vs. DB:SwissProt
Match:
M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)
HSP 1 Score: 60.4622 bits (145), Expect = 4.414e-9
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 1
Query: 1 FIWSGSAEHQKMSLVSWDMVCTPKSK-GGLGFKKLEIMNHALIMKNNWSLITEPTKLSNKVLLTKYGVQMDEVPTSLPTRYGSPLWKAMGNIWKKTRGGIRWNIGDGETVSFWGDCWVASLKPL 369
F WS +K+S V+W +C K GGLGF+ L N AL+ K ++ +I +P L +++L ++Y + S+ TR S W+++ + + G+ IGDG W D W+ PL
Sbjct: 28 FWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTR-PSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPL 150
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018972-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 2
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 9.22e-82 / Id = 33.77 Expect = 4.41e-9 / Id = 31.45 Sequence RNHX1_ARATH M310_ARATH
Match Name E-value Identity Description
RNHX1_ARATH 9.220e-82 33.77 Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
M310_ARATH 4.414e-9 31.45 Uncharacterized mitochondrial protein AtMg00310 OS... [more]
back to top
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 6.1E-24 / Score = 84.3 Expect = 1.5E-18 / Score = 69.1 Expect = 2.6E-11 / Score = 45.2 Expect = 2.8E-18 / Score = 66.4 Score = Expect = 3.85643E-34 / Score = 124.349 Score = Score = Sequence PF13456 G3DSA:3.30.420.10 G3DSA:3.30.420.10 PF13966 PTHR33116 cd06222 SSF53098 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 320..438 e-value: 6.1E-24 score: 84.3
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 316..442 e-value: 1.5E-18 score: 69.1
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 448..527 e-value: 2.6E-11 score: 45.2
IPR026960 Reverse transcriptase zinc-binding domain PFAM PF13966 zf-RVT coord: 124..210 e-value: 2.8E-18 score: 66.4
None No IPR available PANTHER PTHR33116 REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED coord: 14..443
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 319..437 e-value: 3.85643E-34 score: 124.349
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 454..516
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 317..443
Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018972-mRNA1; organism=Citrus sinensis; type=mRNA; length=4876bp TTTATTTGGAGTGGCTCGGCTGAACACCAAAAAATGAGTTTAGTTAGTTG GGATATGGTTTGCACTCCAAAGTCTAAAGGGGGTCTCGGTTTTAAAAAGC TGGAGATTATGAACCATGCCCTCATTATGAAGAATAATTGGAGTTTGATT ACCGAACCCACTAAACTTAGCAACAAAGTGCTGCTAACAAAATACGGAGT TCAAATGGATGAGGTTCCTACAAGTTTGCCTACTCGGTATGGTTCCCCTC TGTGGAAAGCGATGGGAAATATTTGGAAGAAAACTCGAGGGGGCATTCGG TGGAACATTGGTGATGGGGAGACAGTTAGCTTTTGGGGGGATTGTTGGGT GGCAAGTCTAAAGCCTCTAGCTGAATGTGTGATTCAACCAATCCCGAATG AGTTACTAAATAAGAGGGCAGTGGATTTTCTAGATGGATCTGGTAACTGG AATTGGCCTTTGTTTAGCCACTTGGTGCCTAGCAATGTCCTTTTAAAGAT TGCTGCAATTCATCCGCCAGCAGCTGCCTTTGGCAATGACAGTTATTTTT GGGGGGGTTCACCTAATGGTATGTTTTCGGTAAGAGCTGCTTATGAGTTG CTGGATGAGTCTATGGGCAGTGGATCTCAGATTGACTGGCGTTTAGCTTG GAACTGGAAGGGCCCCCACAGCATACGTGTTTTCCTTTGGCTCCTTTTGC ATGGCCGTTTGAAAACTCGGGAGGAGCTTAATAGGAGGCATATCACTGTT TCTATTTACTGTGATCGATGTGGAGGGTCGGTTGAGGATATCCTTCACCC TCTCCGTGATTGTGTTACAGCTAGGAGGGTTTGGTCTCAGCTTTTGCCGA GTCAGTATCATCCTAATTTTTTCCTATTGCAGCTGAAGGATTGGATCCAT ATGAATCTGGGGAGAGGTCATATTACCGCAAGTCAAGAGTACTGGAGAGT GTGCTTTGGAGTGACAGTGTGGCGTCTATGGTATTGGAGAAATGATGTAC TCTTTAATCATGGATCGTGGGATAGCAGCTTTATAGTTACAGATATTAAA GCTCGGACGTATGAGATTCTAAGGTGTATCAAGCAACCTTTGACTGTCAA GCAAAAGAAAGTGGAGAAAATGATACGTTGGAGAGCCCCTATTTGGCCGA GTGTTAGCTTAAATACGGATGGTGCCAGGAAAGGTTTCGGTCAGACTGGA GCTGGTGGTTTGCTTCATGACTTTACTGGAAATTGGATCATGGGATTTAT AGTGAACCTTGGAACGTGTTCAGTCCTTTCGGCTGAACTTTGGGGGTTGC TGCATGGATTGAGAATGGCATGGGAAAATGGGTTTAGGCGTGTTCAAGTT GGAGTGGATAACAAAAGTGTAGTGCATTTGTTGACAATGGCCTCTGttcc agaaaatgaaaatgccaCTCTTATCAAGGCTATTCGGAAATTATTAGAAC AAGATTGGATCGTTCAACTTGAGCATGTGTATCGAGAGGCAAATTGTGCT GCTGATTTTCTCGCTACTTATAGCTTAAATTCCCTTATAGGACTGCATGT TCTCCTTTCTCCTCCTCCTGGAATTGTTGGCATACTTTTTGTTGCCAAAT ACTGTGATGGGTTAATGGGTGGCAATCTAGGGTTGAGTAAACTTGCGAAG ATTTTGGGTGTGGAGAGACTTGGCGAGGCTCACAATGCGGGCTCAGATAG TTTTGTGACGGCTGCTGTGTTTGCGAAGATGAAGGAGAAATTCGAGTTTG AAGAAAGAGTCTTTGATGGGATTTTGTCTGGAATGGATGATAGAATCATG AATAGATCAATTCATATGCCAAGAAGGATAATTCCGACGCCAAGACATTG CCAGCCGCTGATTCCTGATCAACCTCCAACATTTATGACACAGGaacaag cttcCCAATTACCATCAACATCAAGTGAAGGTTGCGAGCCTACGACGTCA AAGATTAACCTTCAAGTGCTGCAGCGCCGACGGCCGATGAGATGGAAGCG CAAATCAGGTGGCGTTTACTGGTGGGACATGAAATCAAGCTGCATTGTTG ATGGGACGTGAAATCGACTGCTGCTGGTGCGCGGTGGAGTGAATAGATGA TGCTGACGATTGATGGTGGGCTGGTGGCGTGGCAGTTGGGACTTGGCAGA GTTGCGAGAGTTGGGCATGAAGGGGTTTGgaggtatttttatttattttt tattttttaatacaaaaccGATCAGGTTTGCTAGTTCGAACCAAACCgaa tcaaaactcaaaataaaatttcgaTTCGGTTCAACCCAACCCGAATGCCC ACCCCAGCTAAGGAGAAAATCTccccttattattatttttttttctgtta tgATGTTACAATTACAGTCTACTTACGCTCTCCACACGCACACGCTAGGA TGATCTCAAAATTctataaaactaaatttatgtaataaaGCGTcggttta aaaaattttaaaagtcaaGGTCAATCATCTTTGAATATGCAGAGAATGCT TGGATTCATTGTGAATATGTCTTCATCTAGAACAAGACTTttgtagaata aaaaaaagcatCTTTAATCCAAAactaaaagaagaataaaagtCTAAATG AAGGACACTAAGCTTTGTATTTACTTGGCCACACAATCACATCGCGATCT TTGATATCCAAAAGAAATAAGTCAAAGACGTTTCTCAGAAAAGAAACATT GAGACTGAACCCACTCTCAACTTCCATCACAAGGGCCAGCTTTCGTGCAC TATTATGTTCCTTTGCATcggaaataaatttataatgagaAAAATCTTGT TGATCAATCAAACCCGCGTACTATTTATTGACTCTCTAGCTTAGCTGTTC ATTGAATCAATCATACAAAACGTGCCAAAACCCGACTTCGATATCCTGCC CCGATCTTCTATATTTTCGGCTGTATAGCCATGACTTGCATGCATTGTTC TGTTTCATGACGGAAATGTTTACCTAAAATGAATCTTAAAGAATCAAACT AGGAGGTGCAGTTTCTAACCCCAATTAATACATGTGAAAAGGTATTTAGT ACTACAGataaaaatgagagagaattaaattaaaaacaaaaaaaaaaaag tctcaaTGATCTCTACCCCTGGAGAGAGATATATCCTTCTACCCATAAAT GGCAGAGAGGAAATTAAAAAGGTCTCATCATTGGTTCATGATTCGACTAA AGGCTCGAGtggttaatttttatgttcttAAAACTGTTCATATTGAACTT CTCTAGCTAAtgcatagaaaaaaaaaatatgtgaacACGAGAATCTTCCT ATATaactttcaaattaatatCTTGTTTAATCCATTTGTGGAATTggttc aattttataatttttaagggaaTTTTCATGTGCCTTAGAtggttgatttt ctttaaaatatttagacaTAGATTTGGTTATTTTGGGCATAGATATGTAT CTAGTCTGAACTActacattacaaaataaaatttagaagtttccaatgaa tttttttagtgatagttcattttcttttaaatatttgaaagtaAATATGA CTATATATATTGAGCACAAATCTAACTTTGCCATTACAGAATTATTTATG AAGTTTTggtaagtttttttattataaatattaatatatttgaattgtaa tattaaaaaaattatacatttttaaaacaatacaaGATGATTGAATCTAT GTTCATATTAGATAACAAGCACGTCGGCACCCGCTTTGACGAAAGGGTCA AATACAGTTAAGCCCTTAAGCAGTTAAGCCCTTCTTGTATTTTATactca taaataaatttcagttggttttttttttaaaataagtcacataactatta ttttttaatgaatagtATTTGACTGactgtaattaattaatttagggATA GTCATagtgaattaatttaattagtcatGTAAGGAGCAGCAAATTCATCA TTTAAAATCCATTTTGTCCGGTACTGTCTGCGGTCAATGCCGGGCTGCCA TGTTTCGGGCCAAAATTAGGCCAGGCCTACATTACAGTAGCCCACGTAAA GTTCGACTGTTTGCTTATgactaatatttaattaaaaataaccaaaatgt CAACTGACATTCTTcgttaaaatataatatttgtgaCGAAcgaataatta agaatataacCCGAAacgggaggggggggggggggaattaTAAAGTGCAA AAAGGTTTGTTCTCTGagatataatgaaaaattttgcaGCGGCTGTGCCA ATGTCAAATACGTTAGATACAGCCGATGAAAGGCAAACGCGACCTgatta tacaaataaatacaTGGTCAATCCAAGTTTTAAgatatttacttaattaa gtTGACAAAcagtttttcattttaatttattttctgacTTAGCATTCATT TGACCTGATGGGTTAAAAAATTGTAGAAGCTGACTCTGGATTCAGAATAT TTCagtttagttaaaaattcgtACAGTATATTCGGGGTCGATCGAGATTG TAAAGTGAAATAACAGAGCTTTAAAGGGAAAATTTAGATCTTAATTAGAC AGATACTGAGCTAATTGCAGAACTAAAACACAGCCATCATCATCGAAAAT GAATTTCGTACATGCTGCGGTATGCAATTGAATGATTGCCGTGTTGACTG GTTATGGGCGTATATGCATATGGTAATATGAATGCAATTAGATGGTCGTG TCAAATATGGTGGTGTGGCACCTCCTAAAGCTTTCTCCTTCGTAACTGAC TTAGTGATAGTAATGTGGGGGAAGAATCAAGCAAACATTCAACCTCACCG TGGAACTTGTGCGTTGTTTATTAATTGGGAGGTGATAGATATTCAGCTCA GTCTACGATAAAGTCAATATGTGAGC back to top protein sequence of gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=618bp MDEVPTSLPTRYGSPLWKAMGNIWKKTRGGIRWNIGDGETVSFWGDCWVA SLKPLAECVIQPIPNELLNKRAVDFLDGSGNWNWPLFSHLVPSNVLLKIA AIHPPAAAFGNDSYFWGGSPNGMFSVRAAYELLDESMGSGSQIDWRLAWN WKGPHSIRVFLWLLLHGRLKTREELNRRHITVSIYCDRCGGSVEDILHPL RDCVTARRVWSQLLPSQYHPNFFLLQLKDWIHMNLGRGHITASQEYWRVC FGVTVWRLWYWRNDVLFNHGSWDSSFIVTDIKARTYEILRCIKQPLTVKQ KKVEKMIRWRAPIWPSVSLNTDGARKGFGQTGAGGLLHDFTGNWIMGFIV NLGTCSVLSAELWGLLHGLRMAWENGFRRVQVGVDNKSVVHLLTMASVPE NENATLIKAIRKLLEQDWIVQLEHVYREANCAADFLATYSLNSLIGLHVL LSPPPGIVGILFVAKYCDGLMGGNLGLSKLAKILGVERLGEAHNAGSDSF VTAAVFAKMKEKFEFEERVFDGILSGMDDRIMNRSIHMPRRIIPTPRHCQ PLIPDQPPTFMTQEQASQLPSTSSEGCEPTTSKINLQVLQRRRPMRWKRK SGGVYWWDMKSSCIVDGT back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22136008..22143186-
Legend: exon polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=7179bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22136008..22143186- (Citrus sinensisTTTATTTGGAGTGGCTCGGCTGAACACCAAAAAATGAGTTTAGTTAGTTG
GGATATGGTTTGCACTCCAAAGTCTAAAGGGGGTCTCGGTTTTAAAAAGC
TGGAGATTATGAACCATGCCCTCATTATGAAGAATAATTGGAGTTTGATT
ACCGAACCCACTAAACTTAGCAACAAAGTGCTGCTAACAAAATACGGAGT
TCAAATGGATGAGGTTCCTACAAGTTTGCCTACTCGGTATGGTTCCCCTC
TGTGGAAAGCGATGGGAAATATTTGGAAGAAAACTCGAGGGGGCATTCGG
TGGAACATTGGTGATGGGGAGACAGTTAGCTTTTGGGGGGATTGTTGGGT
GGCAAGTCTAAAGCCTCTAGCTGAATGTGTGATTCAACCAATCCCGAATG
AGTTACTAAATAAGAGGGCAGTGGATTTTCTAGATGGATCTGGTAACTGG
AATTGGCCTTTGTTTAGCCACTTGGTGCCTAGCAATGTCCTTTTAAAGAT
TGCTGCAATTCATCCGCCAGCAGCTGCCTTTGGCAATGACAGTTATTTTT
GGGGGGGTTCACCTAATGGTATGTTTTCGGTAAGAGCTGCTTATGAGTTG
CTGGATGAGTCTATGGGCAGTGGATCTCAGATTGACTGGCGTTTAGCTTG
GAACTGGAAGGGCCCCCACAGCATACGTGTTTTCCTTTGGCTCCTTTTGC
ATGGCCGTTTGAAAACTCGGGAGGAGCTTAATAGGAGGCATATCACTGTT
TCTATTTACTGTGATCGATGTGGAGGGTCGGTTGAGGATATCCTTCACCC
TCTCCGTGATTGTGTTACAGCTAGGAGGGTTTGGTCTCAGCTTTTGCCGA
GTCAGTATCATCCTAATTTTTTCCTATTGCAGCTGAAGGATTGGATCCAT
ATGAATCTGGGGAGAGGTCATATTACCGCAAGTCAAGAGTACTGGAGAGT
GTGCTTTGGAGTGACAGTGTGGCGTCTATGGTATTGGAGAAATGATGTAC
TCTTTAATCATGGATCGTGGGATAGCAGCTTTATAGTTACAGATATTAAA
GCTCGGACGTATGAGATTCTAAGGTGTATCAAGCAACCTTTGACTGTCAA
GCAAAAGAAAGTGGAGAAAATGATACGTTGGAGAGCCCCTATTTGGCCGA
GTGTTAGCTTAAATACGGATGGTGCCAGGAAAGGTTTCGGTCAGACTGGA
GCTGGTGGTTTGCTTCATGACTTTACTGGAAATTGGATCATGGGATTTAT
AGTGAACCTTGGAACGTGTTCAGTCCTTTCGGCTGAACTTTGGGGGTTGC
TGCATGGATTGAGAATGGCATGGGAAAATGGGTTTAGGCGTGTTCAAGTT
GGAGTGGATAACAAAAGTGTAGTGCATTTGTTGACAATGGCCTCTGTTCC
AGAAAATGAAAATGCCACTCTTATCAAGGCTATTCGGAAATTATTAGAAC
AAGATTGGATCGTTCAACTTGAGCATGTGTATCGAGAGGCAAATTGTGCT
GCTGATTTTCTCGCTACTTATAGCTTAAATTCCCTTATAGGACTGCATGT
TCTCCTTTCTCCTCCTCCTGGAATTGTTGGCATACTTT GTAAGGATGCGT
ATGGGATTGCACACTCCCGATTAGTGTTGCCTTAGCTCCCTGAGAGCTCA
TTTCTAATAAAAAAAAAAAAAGTGCTAAAGCGTTTTTGGTGGGTGCAACA
AAATATTTTGAGAGTGTTTTGGATGTTAAAGTTGTTGCCAAATACTGTGA
TGGGTTAATGGGTGGCAATCTAGGGTTGAGTAAACTTGCGAAGATTTTGG
GTGTGGAGAGACTTGGCGAGGCTCACAATGCGGGCTCAGATAGTTTTGTG
ACGGCTGCTGTGTTTGCGAAGATGAAGGAGAAATTCGAGTTTGAAGAAAG
AGTCTTTGATGGGATTTTGTCTGGAATGGATGATAGAATCATGAATAGAT
CAATTCATATGCCAAGAAGGATAATTCCGACGCCAAGACATTGCCAGCCG
CTGATTCCTGATCAACCTCCAACATTTATGACACAGG GTTTTACAGCATC
AATTCCTCGTCCTTGTTCTTTTAATTACTGTGTTCCTGTTCAAATTCAAT
CAAATATGTTCATTTTGATGTAATTAAATTGATTAATAAAAAAAAGGTTC
CACTGATTATTTTCTACATGTTTCTTCGTTTTTCTTCGGTTCAATTTGTT
TACTTATCTTTTCCTTGTAATTGATGGATTTTCTTCAAATTATAATTTCT
CTTCTAATGGAACTTTATTTACGAGTTCTTAAAGCTGTGAGTGGATAGTT
AAATGCTCTAACAATTGTATTAAAACATATATAAGGCTCAACATTCCCTC
TCATGTAATATAGAATAAAACAAGAGATTGTGATGGGTCGAATAGGGCAA
GAACCCAAAAAATTATATATAGGAAGAATCAAATATGAAATTTACCTTGA
AGATAGAAATCATTTAGCCCTAAAATTTAAGTTGATAGGTGATAGGTAAG
GGTTTGCGAACAATTTTAAAACAATTCTTAGCACAGGACATGGTGCATGT
ATCTTAGTGAAAAAGTTTTCTTTTAGAGTTAAGATTAAATTGCAACATTT
TCTTTTTCTTTTTTTTTTTTAAATTTATGAAGGAGCGTTGTTTTTCCTCG
AAACGTTGTCTTGCACTTGCTCAATAATATATATAATTGATATGTAGGTT
GATGCATTGTACCAAAATGACTCCGTATTAGTTGTTTACATTTTTTTGAA
TTATCTCCTTTTTTTTTAAACTGAATTCCATGCTAGTTTGACGGTTATTT
TTTAGTTAATGAATTTTCATTCCAAAAACAAAATTGAATTTAACCTATGA
AATAGTGTTATTTGGTTAATTGAAATTCTGACGTGGTTTAGAGCTTTATA
ATTTAATTTGGAAATAAAAATAAATTGTTAAGGAGATAGTATAACTAATA
ATTAAGATCATCTCCTTATTTTTTTCTCTTGTATTCTTATCTTTGCTTTT
CAAATCTAGTTAAAAAATGACTTAATTATAAATAAAGTGAAAAAAGACAT
GATTGTCAACATCAAAATTTAAATTCAATTTTAATCACTCATTTAAAGAA
AAAAGAGAATGGAGGGAGAGAGAGGGGGGAGTAATTTTGTTTATTTTTAA
GCTAATCAATGATGATATGTATAGTTTAGTATTTTGCTCATTGATCATAA
AAAAAAAATCAAATAATTATGTGATTTTGCAATTTTCTTCCTACAATTTT
AATTACAACATTTCATCAATCTCTTAACTTAATTTTTTAACTTATTTTGT
AACTGAGAATTTAGAATTTTAGATGAACTTTTCTATAAAAATGTTGACAT
CAAAACAATGAAGTAATATGAAAATTAAAGAGTGATAACTGATAAATGGT
GAAAAACTCAAAAATTACAAGTGCTAAAGAGTAGGGGTTTGTGTTTCGGT
TTTTTGATTATGTCTTTATGGTTTTCGGTTCGGGTTGTAAACGGTTCAAG
TATGAGAATTCAACCTAAACTGTTTGAAAAGTTATTTCAGTTCAGTGTGG
TTTGATTTCAAATTTTGATTTGGGTTCGGTTTCAAATTTCGGATTCAATT
ACGGTTTGGCGTTGCAATTTTGAATTAAAAAAAATTCGTAACAGCTTAAA
TCAATTGGTAAAATCTACTTCTGTTTTTAGCGAATCAAGCATTAGCACTA
TCCAACCATAATGTGTTACAAATACTAAAAATAAAACATTTTTTAAACGA
GATAACAATACAAATTATAGACAAAATAGGCAAAGCCCCAACAAATAAAC
CCAAAACGTTATCTAAATTGCAGAGCATAAAAAATTAATTAATTCATACA
TGAAAATCTAACCATACTCCACTAAATTTGATTCCCTTTTTTGTCCATTT
TTCTTCTTTCGATTTGGTAGCTAGCTTGCTTCAAAATATACAAGTTCGCT
TTGCCCCAACATCACCCTCATGATTAGCTCCATTGCTCCAAGGTGCAATT
AGATTTAGACATATTTTTTCAAATTAATCTTATAATAAAAGTATTTTATT
GATTTGGTGAAACAAAAAAAATAAACAGAACAAGCTTCCCAATTACCATC
AACATCAAGTGAAGGTTGCGAGCCTACGACGTCAAAGATTAACCTTCAAG
TGCTGCAGCGCCGACGGCCGATGAGATGGAAGCGCAAATCAGGTGGCGTT
TACTGGTGGGACATGAAATCAAGCTGCATTGTTGATGGGACGTGA AATCG
ACTGCTGCTGGTGCGCGGTGGAGTGAATAGATGATGCTGACGATTGATGG
TGGGCTGGTGGCGTGGCAGTTGGGACTTGGCAGAGTTGCGAGAGTTGGGC
ATGAAGGGGTTTGGAGGTATTTTTATTTATTTTTTATTTTTTAATACAAA
ACCGATCAGGTTTGCTAGTTCGAACCAAACCGAATCAAAACTCAAAATAA
AATTTCGATTCGGTTCAACCCAACCCGAATGCCCACCCCAGCTAAGGAGA
AAATCTCCCCTTATTATTATTTTTTTTTCTGTTATGATGTTACAATTACA
GTCTACTTACGCTCTCCACACGCACACGCTAGGATGATCTCAAAATTCTA
TAAAACTAAATTTATGTAATAAAGCGTCGGTTTAAAAAATTTTAAAAGTC
AAGGTCAATCATCTTTGAATATGCAGAGAATGCTTGGATTCATTGTGAAT
ATGTCTTCATCTAGAACAAGACTTTTGTAGAATAAAAAAAAGCATCTTTA
ATCCAAAACTAAAAGAAGAATAAAAGTCTAAATGAAGGACACTAAGCTTT
GTATTTACTTGGCCACACAATCACATCGCGATCTTTGATATCCAAAAGAA
ATAAGTCAAAGACGTTTCTCAGAAAAGAAACATTGAGACTGAACCCACTC
TCAACTTCCATCACAAGGGCCAGCTTTCGTGCACTATTATGTTCCTTTGC
ATCGGAAATAAATTTATAATGAGAAAAATCTTGTTGATCAATCAAACCCG
CGTACTATTTATTGACTCTCTAGCTTAGCTGTTCATTGAATCAATCATAC
AAAACGTGCCAAAACCCGACTTCGATATCCTGCCCCGATCTTCTATATTT
TCGGCTGTATAGCCATGACTTGCATGCATTGTTCTGTTTCATGACGGAAA
TGTTTACCTAAAATGAATCTTAAAGAATCAAACTAGGAGGTGCAGTTTCT
AACCCCAATTAATACATGTGAAAAGGTATTTAGTACTACAGATAAAAATG
AGAGAGAATTAAATTAAAAACAAAAAAAAAAAAGTCTCAATGATCTCTAC
CCCTGGAGAGAGATATATCCTTCTACCCATAAATGGCAGAGAGGAAATTA
AAAAGGTCTCATCATTGGTTCATGATTCGACTAAAGGCTCGAGTGGTTAA
TTTTTATGTTCTTAAAACTGTTCATATTGAACTTCTCTAGCTAATGCATA
GAAAAAAAAAATATGTGAACACGAGAATCTTCCTATATAACTTTCAAATT
AATATCTTGTTTAATCCATTTGTGGAATTGGTTCAATTTTATAATTTTTA
AGGGAATTTTCATGTGCCTTAGATGGTTGATTTTCTTTAAAATATTTAGA
CATAGATTTGGTTATTTTGGGCATAGATATGTATCTAGTCTGAACTACTA
CATTACAAAATAAAATTTAGAAGTTTCCAATGAATTTTTTTAGTGATAGT
TCATTTTCTTTTAAATATTTGAAAGTAAATATGACTATATATATTGAGCA
CAAATCTAACTTTGCCATTACAGAATTATTTATGAAGTTTTGGTAAGTTT
TTTTATTATAAATATTAATATATTTGAATTGTAATATTAAAAAAATTATA
CATTTTTAAAACAATACAAGATGATTGAATCTATGTTCATATTAGATAAC
AAG GTATTTGACATGTATCTATTGAAAAATTAAAAACAAATGGTCCCGAT
TTTCTCTTTTCTTCTTCTTTGCTATTGAAACAAGGCTTGTTTGATGACAG
CTTCTGCATTGAGTCTTGGCAGCACGTCGGCACCCGCTTTGACGAAAGGG
TCAAATACAGTTAAGCCCTTAAGCAGTTAAGCCCTTCTTGTATTTTATAC
TCATAAATAAATTTCAGTTGGTTTTTTTTTTAAAATAAGTCACATAACTA
TTATTTTTTAATGAATAGTATTTGACTGACTGTAATTAATTAATTTAGGG
ATAGTCATAGTGAATTAATTTAATTAGTCATGTAAGGAGCAGCAAATTCA
TCATTTAAAATCCATTTTGTCCGGTACTGTCTGCGGTCAATGCCGGGCTG
CCATGTTTCGGGCCAAAATTAGGCCAGGCCTACATTACAGTAGCCCACGT
AAAGTTCGACTGTTTGCTTATGACTAATATTTAATTAAAAATAACCAAAA
TGTCAACTGACATTCTTCGTTAAAATATAATATTTGTGACGAACGAATAA
TTAAGAATATAACCCGAAACGGGAGGGGGGGGGGGGGGAATTATAAAGTG
CAAAAAGGTTTGTTCTCTGAGATATAATGAAAAATTTTGCAGCGGCTGTG
CCAATGTCAAATACGTTAGATACAGCCGATGAAAGGCAAACGCGACCTGA
TTATACAAATAAATACATGGTCAATCCAAGTTTTAAGATATTTACTTAAT
TAAGTTGACAAACAGTTTTTCATTTTAATTTATTTTCTGACTTAGCATTC
ATTTGACCTGATGGGTTAAAAAATTGTAGAAGCTGACTCTGGATTCAGAA
TATTTCAGTTTAGTTAAAAATTCGTACAGTATATTCGGGGTCGATCGAGA
TTGTAAAGTGAAATAACAGAGCTTTAAAGGGAAAATTTAGATCTTAATTA
GACAGATACTGAGCTAATTGCAGAACTAAAACACAGCCATCATCATCGAA
AATGAATTTCGTACATGCTGCGGTATGCAATTGAATGATTGCCGTGTTGA
CTGGTTATGGGCGTATATGCATATGGTAATATGAATGCAATTAGATGGTC
GTGTCAAATATGGTGGTGTGGCACCTCCTAAAGCTTTCTCCTTCGTAACT
GACTTAGTGATAGTAATGTGGGGGAAGAATCAAGCAAACATTCAACCTCA
CCGTGGAACTTGTGCGTTGTTTATTAATTGGGAGGTGATAGATATTCAGC
TCAGTCTACGATAAAGTCAATATGTGAGC back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22136008..22143186-
>gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018972-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018972-mRNA1; organism=Citrus sinensis; type=CDS; length=1857bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22136008..22143186- (Citrus sinensis ATGGATGAGGTTCCTACAAGTTTGCCTACTCGGTATGGTTCCCCTCTGTG GAAAGCGATGGGAAATATTTGGAAGAAAACTCGAGGGGGCATTCGGTGGA ACATTGGTGATGGGGAGACAGTTAGCTTTTGGGGGGATTGTTGGGTGGCA AGTCTAAAGCCTCTAGCTGAATGTGTGATTCAACCAATCCCGAATGAGTT ACTAAATAAGAGGGCAGTGGATTTTCTAGATGGATCTGGTAACTGGAATT GGCCTTTGTTTAGCCACTTGGTGCCTAGCAATGTCCTTTTAAAGATTGCT GCAATTCATCCGCCAGCAGCTGCCTTTGGCAATGACAGTTATTTTTGGGG GGGTTCACCTAATGGTATGTTTTCGGTAAGAGCTGCTTATGAGTTGCTGG ATGAGTCTATGGGCAGTGGATCTCAGATTGACTGGCGTTTAGCTTGGAAC TGGAAGGGCCCCCACAGCATACGTGTTTTCCTTTGGCTCCTTTTGCATGG CCGTTTGAAAACTCGGGAGGAGCTTAATAGGAGGCATATCACTGTTTCTA TTTACTGTGATCGATGTGGAGGGTCGGTTGAGGATATCCTTCACCCTCTC CGTGATTGTGTTACAGCTAGGAGGGTTTGGTCTCAGCTTTTGCCGAGTCA GTATCATCCTAATTTTTTCCTATTGCAGCTGAAGGATTGGATCCATATGA ATCTGGGGAGAGGTCATATTACCGCAAGTCAAGAGTACTGGAGAGTGTGC TTTGGAGTGACAGTGTGGCGTCTATGGTATTGGAGAAATGATGTACTCTT TAATCATGGATCGTGGGATAGCAGCTTTATAGTTACAGATATTAAAGCTC GGACGTATGAGATTCTAAGGTGTATCAAGCAACCTTTGACTGTCAAGCAA AAGAAAGTGGAGAAAATGATACGTTGGAGAGCCCCTATTTGGCCGAGTGT TAGCTTAAATACGGATGGTGCCAGGAAAGGTTTCGGTCAGACTGGAGCTG GTGGTTTGCTTCATGACTTTACTGGAAATTGGATCATGGGATTTATAGTG AACCTTGGAACGTGTTCAGTCCTTTCGGCTGAACTTTGGGGGTTGCTGCA TGGATTGAGAATGGCATGGGAAAATGGGTTTAGGCGTGTTCAAGTTGGAG TGGATAACAAAAGTGTAGTGCATTTGTTGACAATGGCCTCTGTTCCAGAA AATGAAAATGCCACTCTTATCAAGGCTATTCGGAAATTATTAGAACAAGA TTGGATCGTTCAACTTGAGCATGTGTATCGAGAGGCAAATTGTGCTGCTG ATTTTCTCGCTACTTATAGCTTAAATTCCCTTATAGGACTGCATGTTCTC CTTTCTCCTCCTCCTGGAATTGTTGGCATACTTTTTGTTGCCAAATACTG TGATGGGTTAATGGGTGGCAATCTAGGGTTGAGTAAACTTGCGAAGATTT TGGGTGTGGAGAGACTTGGCGAGGCTCACAATGCGGGCTCAGATAGTTTT GTGACGGCTGCTGTGTTTGCGAAGATGAAGGAGAAATTCGAGTTTGAAGA AAGAGTCTTTGATGGGATTTTGTCTGGAATGGATGATAGAATCATGAATA GATCAATTCATATGCCAAGAAGGATAATTCCGACGCCAAGACATTGCCAG CCGCTGATTCCTGATCAACCTCCAACATTTATGACACAGGAACAAGCTTC CCAATTACCATCAACATCAAGTGAAGGTTGCGAGCCTACGACGTCAAAGA TTAACCTTCAAGTGCTGCAGCGCCGACGGCCGATGAGATGGAAGCGCAAA TCAGGTGGCGTTTACTGGTGGGACATGAAATCAAGCTGCATTGTTGATGG GACGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term Definition
GO:0004523 RNA-DNA hybrid ribonuclease activity
GO:0003676 nucleic acid binding