gene-KPL71_019003-mRNA1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: DYT1_ARATH (Transcription factor DYT1 OS=Arabidopsis thaliana OX=3702 GN=DYT1 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.184e-25 Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 1 Query: 25 DSEDKAVYKSKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVLFLCDXXXXXXXXXXXXXXXXIDE---------NAAEEMKNCGIE------------LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIRG 525
+ E+ +KS NLEAERRRR+KL+ RL+ LRS VP +T+M K +++EDAITYI +L+ V L + ++E E + + D + EEMK GIE + II K+ G FTK +E M LGF D S+TT GA L S+ ++ D VE+T++ LL+++R
Sbjct: 22 EKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISASVQTQELCD----VEQTKDFLLEVMRS 205
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: TDR_ORYSJ (Transcription factor TDR OS=Oryza sativa subsp. japonica OX=39947 GN=TDR PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.609e-12 Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 Query: 49 KSKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVLFLCD 219
+ KNLEAER+RR+KLN L KLRSLVPNIT M + +++ DAI YI L+ +V L D
Sbjct: 283 QCKNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQD 339
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana OX=3702 GN=BHLH35 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 7.302e-12 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 4 IKREHRSDSEDKAVYK--SKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLK 195
I + S S D A SKN+ +ER RRQKLN RL LRS+VPNIT M K ++I+DAI+YI L+
Sbjct: 36 ISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQ 101
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=AIB PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 7.318e-12 Identity = 36/142 (25.35%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 58 NLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVLFLCDXXXXXXXXXXXXXXXXIDENAAEEMKNCGIELRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR 483
++EAER+RR+KLN R LRS+VPNI+ M K +++ DAI+YI++L+ +V + D+ + + E ++E+ +++ E+ + +I +++++AM + ++ + + V++ +G D + +
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTK 537
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana OX=3702 GN=AMS PE=1 SV=2) HSP 1 Score: 64.3142 bits (155), Expect = 3.079e-11 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1 Query: 49 KSKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVLFLCD 219
++KNL AERRRR+KLNDRL LRSLVP IT + + +++ DAI Y+++L+ L D
Sbjct: 312 QAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQD 368
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.738e-10 Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 Query: 49 KSKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRV 204
+KNL AERRRR+KLNDRL LRS+VP I+ M + +++ DAI Y+++L R+
Sbjct: 305 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRI 356
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.787e-10 Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 Query: 49 KSKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRV 204
+KNL AERRRR+KLNDRL LRS+VP I+ M + +++ DAI Y+++L R+
Sbjct: 265 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRI 316
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: MYC2_ORYSJ (Transcription factor MYC2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYC2 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.500e-10 Identity = 25/52 (48.08%), Postives = 41/52 (78.85%), Query Frame = 1 Query: 58 NLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVLFL 213
++EAER+RR+KLN R LR++VPN++ M K +++ DAI+YI +L+G++ L
Sbjct: 525 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTAL 576
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: BH027_ARATH (Transcription factor bHLH27 OS=Arabidopsis thaliana OX=3702 GN=BHLH27 PE=2 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 6.099e-10 Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 52 SKNLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQL 192
SKN+ +ER RRQKLN RL LRS+VPNI+ + K +VI+D+I Y+++L
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQEL 99
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Match: MYC2_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 1.501e-9 Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = 1 Query: 58 NLEAERRRRQKLNDRLLKLRSLVPNITDMKKETVIEDAITYIRQLKGRVL 207
++EAER+RR+KLN R LR++VPN++ M K +++ DAI YI +LK +V+
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVV 502 The following BLAST results are available for this feature:
BLAST of gene-KPL71_019003-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019003-mRNA1; organism=Citrus sinensis; type=mRNA; length=531bpback to top protein sequence of gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=176bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22354409..22355316- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=908bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22354409..22355316- (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22354409..22355316- >gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019003-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019003-mRNA1; organism=Citrus sinensis; type=CDS; length=531bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22354409..22355316- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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