gene-KPL71_019006-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: RSL1_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=2) HSP 1 Score: 194.512 bits (493), Expect = 3.094e-59 Identity = 115/234 (49.15%), Postives = 149/234 (63.68%), Query Frame = 1 Query: 202 HDHFMHANASNLLSFEQNE------TKDDEYSMWEGNFN------QINQKYSSDHRLMEDFNCFDTASNYGFMINNSARDC----HGDWLYTEATAVTDTILESGSQDASSSLK-----RPNTGESMQAVKKQCAIAAXXXXXXXXXXSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREAIDAIL 840 H+ M NAS+ +F+ + T + + +GN + +Q S R+++ N F+T S++G N+ ++ +GDWLY+ +T I+ GS+ S+S K RP TGE+ Q KK ++ K K + PKDPQS+AAKNRRERISERLK+LQELVPNG+KVDLVTMLEKAI YVKFLQ+QVKVLA DEFWP QGGKAPDISQV+EAIDAIL Sbjct: 65 HNSLMDFNASSFFTFDNHRSLISPVTNGGAFPVVDGNMSYSYDGWSHHQVDSISPRVIKTPNSFETTSSFGLTSNSMSKPATNHGNGDWLYSGST-----IVNIGSRHESTSPKLAGNKRPFTGENTQLSKKP---SSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFWPAQGGKAPDISQVKEAIDAIL 290
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: RHD6_ARATH (Transcription factor RHD6 OS=Arabidopsis thaliana OX=3702 GN=RHD6 PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 3.644e-56 Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 415 DWLYTEATAVTDTILESGSQDASSSLKRPNTGESMQAVKKQCAIAAXXXXXXXXXXSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREAIDAIL 840 DWLY+++T VT S+ KR +TGES Q KK +++ K K + PKDPQS+AAKNRRERISERLKILQELVPNG+KVDLVTMLEKAISYVKFLQ+QVKVLATDEFWP QGGKAPDISQV++AIDAIL Sbjct: 146 DWLYSDSTVVTTGSRNESLSPKSAGNKRSHTGESTQPSKK---LSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEFWPAQGGKAPDISQVKDAIDAIL 284
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 8.266e-23 Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 777 DPQS+ A+ RRERI+ERL+ILQ LVPNG+KVD+ TMLE+A+ YVKFLQLQ+K+L++D+ W Sbjct: 246 DPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLW 305
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: BH133_ORYSJ (Transcription factor BHLH133 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH133 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.795e-23 Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 583 SAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 777 S + QS AKNRR+RI+ERL+ILQEL+PNG+KVD+ TMLE+AI YVKFL LQ+K+L++DE W Sbjct: 112 SVSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHLQIKLLSSDEMW 176
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: RSL2_ARATH (Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.266e-22 Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 777 DPQS+ A+ RRERI+ERL+ILQ LVPNG+KVD+ TMLE+A+ YVKFLQLQ+K+L++D+ W Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLW 334
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: RSL4_ARATH (Transcription factor RSL3 OS=Arabidopsis thaliana OX=3702 GN=RSL4 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.351e-21 Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 777 DPQS+ A+ RRE+I+ERLK LQ LVPNG+KVD+ TMLE+A+ YVKFLQLQ+K+L++D+ W Sbjct: 176 DPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLW 235
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.759e-21 Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 777 DPQS+ A+ RRERI++RLK LQ LVPNG+KVD+ TMLE A+ YVKFLQLQ+K+L++++ W Sbjct: 141 DPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLW 200
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: LRL1_ARATH (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 9.660e-19 Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREA 825 DP SIA + RRERI+ER+K LQELVPNG+K D +ML++ I YVKFLQLQVKVL+ GG A SQ+ EA Sbjct: 147 DPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL----GGAASVSSQISEA 218
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: LRL2_ARATH (Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 2.800e-18 Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVRE 822 DP SIA + RRERI+ER+K LQELVPNG+K D +ML++ I YVKFLQLQVKVL+ GG A SQ+ E Sbjct: 139 DPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL----GGAASASSQISE 209
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Match: RHL1_LOTJA (bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.498e-16 Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 Query: 598 DPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKA 798 DP SIA + RRERI+ER+K LQELVPN +K D +ML++ I YVKFLQLQVKVL+ GG A Sbjct: 183 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL----GGAA 245 The following BLAST results are available for this feature:
BLAST of gene-KPL71_019006-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019006-mRNA1; organism=Citrus sinensis; type=mRNA; length=876bpback to top protein sequence of gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=291bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22367718..22369035+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1318bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22367718..22369035+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22367718..22369035+ >gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019006-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019006-mRNA1; organism=Citrus sinensis; type=CDS; length=876bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22367718..22369035+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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