Transcript Overview
| Name | gene-KPL71_019019-mRNA1 |
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| Unique Name | gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 |
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| Type | mRNA |
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| Organism | Citrus sinensis (Sweet orange) |
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| Sequence length | 963 |
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| Product | glutamyl-tRNA (Gln) amidotransferase subunit C |
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Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon1 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon2 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon3 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-exon3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS1 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS2 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
| rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS3 | rna-gnl|WGS:JAHMIT|DVS6B01916.t01-CDS3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | polypeptide |
| gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1-protein | Citrus sinensis | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 128..145 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 154..169 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 128..174 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 286..320 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 299..320 |
| None | No IPR available | PANTHER | PTHR38393 | GLUTAMYL-TRNA (GLN) AMIDOTRANSFERASE SUBUNIT C | coord: 2..320 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019019-mRNA1; organism=Citrus sinensis; type=mRNA; length=963bp
ATGATGGCCTGGACGGTGCGTTCCCGCCTTTCCCACTTTCCGTCACTCTT
CAGAACCGCAAAATCTCAATCACCGCCAACACTTGCAACGAGAATAGAAT
CTCTCTCCGATTCCGTTGCTAGCAGCTCAGGAAATCATATTCTTGGTGGG
TTTGGCTCAAATTTTCTCGTATCTCGGTCATATGCTCGTGATGGACGCAA
ACATTATGATCTGTTTGGCGATGCAAGACCAGGTGATAAGAATTTTAGGG
ACACTTGGAAGAAAGAGATTGATGAAGAGGATTGTGTGTGGACAGGAAGT
GAAGATGAGAGTGACTCTGAGAAGGGTCAAAGTCGTCTAGAAAAGGAGAT
CAGGAAAGTCAGACAGAAGGCAAAGGAGCACTCAGACCTAATTGATGCTG
ATGACAGTGACGAGTTACACAGCGTGTGGTCTGGAAGTGATGAGGAGAAA
ACTCTCTGGACTGGCAGTGaaggtgatgatgatgatgatgatatacCTAC
AGAACCCTACCCAAATGAAGCTAGTGACAAgtatattgataaattatttg
agtttGAGGAGAAACCTAAATATCGAACTATCTCAGAACTTCTGAAAGAT
GAAAACGAACCAGAAGAGTTGTCCCCTGGAAAGCAAGCCAGGAAACTTGC
AGTTGAGAATGccttgaagaaattaaagaaagggCCAGATGGGCGCTACA
CCAATGTGTGGGAAGTCATGAGTGATATAGACATCTTAATAGGAgcattt
gaaaatattgtcTCTGGACCAGAGTATGAGGAGCTTAGAAAGGGTGGGCC
AAAGAAATTGAATATGCAGTTTTTCAAAGATATACAGGCACGTATGAGAG
ATCCAAACTATAAATTCTCACCTGAGCTGAAGTTGAAACCGAAGAGCAAA
TTAGTTCCAAGAAAGAAATGGCAGAAGACACAATCCAGACGAAGGAAAGC
ACAAAAGCgctaa back to topprotein sequence of gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=320bp
MMAWTVRSRLSHFPSLFRTAKSQSPPTLATRIESLSDSVASSSGNHILGG
FGSNFLVSRSYARDGRKHYDLFGDARPGDKNFRDTWKKEIDEEDCVWTGS
EDESDSEKGQSRLEKEIRKVRQKAKEHSDLIDADDSDELHSVWSGSDEEK
TLWTGSEGDDDDDDIPTEPYPNEASDKYIDKLFEFEEKPKYRTISELLKD
ENEPEELSPGKQARKLAVENALKKLKKGPDGRYTNVWEVMSDIDILIGAF
ENIVSGPEYEELRKGGPKKLNMQFFKDIQARMRDPNYKFSPELKLKPKSK
LVPRKKWQKTQSRRRKAQKR back to topmRNA from alignment at CM039175.1_Chr6_DVS_B:22460734..22462151+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=1418bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22460734..22462151+ (Citrus sinensis
ATGATGGCCTGGACGGTGCGTTCCCGCCTTTCCCACTTTCCGTCACTCTT
CAGAACCGCAAAATCTCAATCACCGCCAACACTTGCAACGAGGTAAGTCT
CTTCCTTTCAATACGCATATTGGTTACTTTAGAGCTGTGGTTTTAGTTCT
AAATTTCGTTGACAACTTCTAAAGGTACTTTTTGTTTCACCTGTCAGAAT
AGAATCTCTCTCCGATTCCGTTGCTAGCAGCTCAGGAAATCATATTCTTG
GTGGGTTTGGCTCAAATTTTCTCGGTTAGTGAAAAATTGAGAGGTTTTTG
ATGGTGATGGAAGCTTTTTTTGTATTAGTCTTGGTATTTGTAGAAAGTCC
TCAATGAATGCATTCACTGAATCTTTCTGTGAAATTTCCTGTGAGTATTT
GATAAAGCTTTCATCTTTTATGCTTGTTATGCATTACAGTATCTTACAAG
ATAAGCATCCTCTGATTGGACTCATGACTTGAGGACTATTATCATTTGTC
AGTGGGATTTTAGAGTTATCTATTTATGCTTGCAGCATGGATTTACTTGC
TGTACATATGTATTTGGTCGTTCATCTTTGAGTTATATGCACATGTTATG
TACatatatttgattgttttgTAGTATCTCGGTCATATGCTCGTGATGGA
CGCAAACATTATGATCTGTTTGGCGATGCAAGACCAGGTGATAAGAATTT
TAGGGACACTTGGAAGAAAGAGATTGATGAAGAGGATTGTGTGTGGACAG
GAAGTGAAGATGAGAGTGACTCTGAGAAGGGTCAAAGTCGTCTAGAAAAG
GAGATCAGGAAAGTCAGACAGAAGGCAAAGGAGCACTCAGACCTAATTGA
TGCTGATGACAGTGACGAGTTACACAGCGTGTGGTCTGGAAGTGATGAGG
AGAAAACTCTCTGGACTGGCAGTGaaggtgatgatgatgatgatgatata
cCTACAGAACCCTACCCAAATGAAGCTAGTGACAAgtatattgataaatt
atttgagtttGAGGAGAAACCTAAATATCGAACTATCTCAGAACTTCTGA
AAGATGAAAACGAACCAGAAGAGTTGTCCCCTGGAAAGCAAGCCAGGAAA
CTTGCAGTTGAGAATGccttgaagaaattaaagaaagggCCAGATGGGCG
CTACACCAATGTGTGGGAAGTCATGAGTGATATAGACATCTTAATAGGAg
catttgaaaatattgtcTCTGGACCAGAGTATGAGGAGCTTAGAAAGGGT
GGGCCAAAGAAATTGAATATGCAGTTTTTCAAAGATATACAGGCACGTAT
GAGAGATCCAAACTATAAATTCTCACCTGAGCTGAAGTTGAAACCGAAGA
GCAAATTAGTTCCAAGAAAGAAATGGCAGAAGACACAATCCAGACGAAGG
AAAGCACAAAAGCgctaa back to topCoding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22460734..22462151+ >gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019019-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019019-mRNA1; organism=Citrus sinensis; type=CDS; length=963bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22460734..22462151+ (Citrus sinensis
ATGATGGCCTGGACGGTGCGTTCCCGCCTTTCCCACTTTCCGTCACTCTT
CAGAACCGCAAAATCTCAATCACCGCCAACACTTGCAACGAGAATAGAAT
CTCTCTCCGATTCCGTTGCTAGCAGCTCAGGAAATCATATTCTTGGTGGG
TTTGGCTCAAATTTTCTCGTATCTCGGTCATATGCTCGTGATGGACGCAA
ACATTATGATCTGTTTGGCGATGCAAGACCAGGTGATAAGAATTTTAGGG
ACACTTGGAAGAAAGAGATTGATGAAGAGGATTGTGTGTGGACAGGAAGT
GAAGATGAGAGTGACTCTGAGAAGGGTCAAAGTCGTCTAGAAAAGGAGAT
CAGGAAAGTCAGACAGAAGGCAAAGGAGCACTCAGACCTAATTGATGCTG
ATGACAGTGACGAGTTACACAGCGTGTGGTCTGGAAGTGATGAGGAGAAA
ACTCTCTGGACTGGCAGTGaaggtgatgatgatgatgatgatatacCTAC
AGAACCCTACCCAAATGAAGCTAGTGACAAgtatattgataaattatttg
agtttGAGGAGAAACCTAAATATCGAACTATCTCAGAACTTCTGAAAGAT
GAAAACGAACCAGAAGAGTTGTCCCCTGGAAAGCAAGCCAGGAAACTTGC
AGTTGAGAATGccttgaagaaattaaagaaagggCCAGATGGGCGCTACA
CCAATGTGTGGGAAGTCATGAGTGATATAGACATCTTAATAGGAgcattt
gaaaatattgtcTCTGGACCAGAGTATGAGGAGCTTAGAAAGGGTGGGCC
AAAGAAATTGAATATGCAGTTTTTCAAAGATATACAGGCACGTATGAGAG
ATCCAAACTATAAATTCTCACCTGAGCTGAAGTTGAAACCGAAGAGCAAA
TTAGTTCCAAGAAAGAAATGGCAGAAGACACAATCCAGACGAAGGAAAGC
ACAAAAGCgctaa back to top
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