gene-KPL71_019030-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana OX=3702 GN=At5g37930 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.433e-65 Identity = 131/341 (38.42%), Postives = 191/341 (56.01%), Query Frame = 1 Query: 733 MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRD-----------GXXXXXXXXXXXXXXXSVDNGGNGEKADLDLAGPSRN-GPF--------------SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCI 1671 MA+FSV ++GEGPS N+ Q R R P + + GEE+E+ET +Q ES D G + +D ++ R G F SVT+ DP+V DCPIC E L P+FQC+NGH+AC+ CC+K+ N+CPSC PIGY RCRA+EKV+E+ +V+C N+ YGCK + SYG + HE++C PCSCPI DC++ G L H A+HK+ + F++N + ++L++ + +LQEE DG + ++ +SVSCIAP G L + S ++ KNIQ + P GF+L+P F + +L L++ I Sbjct: 1 MARFSVCGGDDGEGPSNNN-HQSRKRQRLPSIDENEEDAETSDAGSSGEEDEDETQNQGMRPESEDRGSTSDDSDREVVIEERRFGKFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRALHAVYVSVSCIAPLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVTNEHPEDGFMLIPSYLFSGNDNLNLQIWI 340
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana OX=3702 GN=At5g37870 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 4.517e-53 Identity = 97/246 (39.43%), Postives = 143/246 (58.13%), Query Frame = 1 Query: 961 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEV--VEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYS---IFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRL 1680 S +TD ++ DCPICY++L PVFQC NGH+ACS+CC K+ NKCP+C P+G+ RCRA+E+VLESV V CR ++ GC T+ YG++ HEKIC PCSCP+ CN+ GS LY+H+ H + + +N V + + + ++ ++ + +LF++ E G +SVSCIAPS +S ++ G T+ +QS K + P F+L+P S L + LCI L Sbjct: 34 SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLLFVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSSQRPKDSFMLIP-HSLLCGPLLGMMLCINEL 278
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL2_ARATH (E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66620 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 3.542e-52 Identity = 110/270 (40.74%), Postives = 147/270 (54.44%), Query Frame = 1 Query: 889 SVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGC---LFYSIFAGPAG--STVRFQSFTKN-IQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRL 1680 SV+NGG A R+G T+ + ++ DCPIC +LT+P+FQC+NGHIACS+CC+K+ NKCPSC PIG R R +E+V+E+V VTC N +GC SYGK+ HEK C C CP P+CN+ G LY HF H ++ L + + +VLQ G G L + ET G ++V+CIAP G F + P G ST+ F+S N IQ P F+LVP G LK+E+CIR+L Sbjct: 21 SVENGGGDAVA--------RSG----TLFELDLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNHYDTWNQIGCGNFAGAWLRISEKILVLQ-YGQGPLIAVQCFKETQGMYVTVNCIAPCAPGVGELSFELSYKMPMGGNSTMMFKSEEMNRIQKVSFQTPEKDFMLVPYYFLGDFSTLKMEICIRKL 277
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana OX=3702 GN=At5g37890 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.552e-50 Identity = 96/246 (39.02%), Postives = 139/246 (56.50%), Query Frame = 1 Query: 961 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHK--NSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPA--GSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLD 1683 S + D E+ DCPICYE+ T P+FQC+NGH+ACS+CC K+ NKCP+C +P+G+NRCRA+E VLES+ + C N+ GCK +SYGK+ HEK C C+CP DCN+ S LY H+ H N F+ + + V +N+ + ++ E LF + E G ++VSCIAPS YS G TV +QS K + P F+L+P S L++ + +++L+ Sbjct: 40 STMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQENFMLIP-NSLLRGDVLEMRISVKKLN 284
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL3_ARATH (E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana OX=3702 GN=At1g66630 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.034e-44 Identity = 93/261 (35.63%), Postives = 140/261 (53.64%), Query Frame = 1 Query: 961 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHD--HEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNV---KNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYS--IFAGPAGSTVRFQSFTKNI------QNRVDN---------PPSTGFLLVPIESFGSSGDLKLELCIRR 1677 S T+ + ++ DCPICY L AP++QC+NGHIACS+CC K+ KCP C IG+ R R +EK++E+V V+C N+ YGC + Y + + HE++C C CP P+C + G LY+H+ A+HK F E L+V K F+VLQE DG L ++ E+ G ++V+CIAP G +S + + F+S N +N V N ++ F+ +P + LK+++CIRR Sbjct: 38 SATLLELDLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAWLHVTGEKLSFLVLQEYEDGPLVVVQCSMESHGICVTVNCIAPCAPGVGEFSCHLIYRNGSEKITFESKKMNKIQKVSPENHVANYKPIPYYLRGEASNFMSIPYYLLDEASILKMQICIRR 298
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana OX=3702 GN=At1g66650 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 2.413e-42 Identity = 95/252 (37.70%), Postives = 141/252 (55.95%), Query Frame = 1 Query: 949 NGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK-HDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNS---ALHFLYNE--VVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFY--SIFAGPAGSTVRFQSFTKNIQN--RVDNPPSTGFLLVPIESFGSSGD-LKLELCI 1671 + P SVT+ + V +CP C++ L P+FQC NGH+AC CC K+ +C C PIG RCRA+EKV+++ V+C N+ YGCK + +YG + HEK+C PCSCPI DCN++G L HF A HK S F+++ + + L+ ++ ++ EE G LF++ + G +VS IAP + S+ ST+R KNIQ + P FLL+P S+ +GD +K+E+ I Sbjct: 71 SSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHFRATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFVVQGFIGSHGVYATVSHIAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQPQEDFLLIP--SYMVNGDHMKMEISI 320
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL9_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana OX=3702 GN=At5g37910 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.712e-40 Identity = 84/251 (33.47%), Postives = 132/251 (52.59%), Query Frame = 1 Query: 892 VDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSAL----HFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCK--GCLFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVP 1623 + G GE+ +A R+ ++ + D ++ DCPIC E+LT+P+FQC+NGH+AC +CC K+ NKCP+C P+G++R RA+E VLES+ + C N +GC + YGK+ HEK C CSCP C++ GS LY H+ H + F ++ + ++ ++ + +L + E G ++VS IAPS G Y + G TV ++S K + P F+L+P Sbjct: 11 ISQGDGGER----VAKRQRS---AIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLYAHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVTVSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQENFMLIP 254
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SIL11_ARATH (E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana OX=3702 GN=At5g62800 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 8.038e-39 Identity = 89/241 (36.93%), Postives = 124/241 (51.45%), Query Frame = 1 Query: 946 RNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPS--CCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYN----------EVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVP 1623 N S + D +V DCP+C+E LT P FQC++GHI C+ C +K+ NKCP C PIG RC A+E+VLES V C+N+ +GC ++SY K HEK C + CSCP +CN+ GS N +Y HF +H LYN V+V +N+K + VL E +LF++ E G ++V IAP Y + G V ++S K + P F+ VP Sbjct: 27 ENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNYTGSYNIIYGHFMRRH-------LYNSTIVSSKWGYSTVDVLINIKEKVSVLWESRQKLLFVVQCFKERHGVYVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPEVKRLLEVNSQIPDDSFMFVP 260
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL8_ARATH (E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana OX=3702 GN=At5g37900 PE=3 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 1.823e-35 Identity = 84/243 (34.57%), Postives = 125/243 (51.44%), Query Frame = 1 Query: 961 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALH----FLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCK--GCLFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSS-GDLKLEL 1665 S T+ D ++ DCPIC E LT P+FQCENGH+ACS+CC K+ NKCP+C +E +LES+ VTC N +GC + YGKK HE+ C CSCP DC + G LY H+ H +++ F + + + + ++ + + +LF + E+ G ++VSCIAPS G Y I T+ ++S K ++ P F+L+P S D+KL + Sbjct: 24 SATLLDLDILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PMENILESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCPSLDCEYSGRYEDLYDHYKLTHISNSYWTTNCFRSSIPYKAPMLISDKIQITRVYEKKILFAVQCFRESCGVYVTVSCIAPSAPEVGQFSYQISYTVDEHTMVYRSPQMKRVRKVSFETPQENFMLIPHNLLRSELLDIKLSI 256
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Match: SINL5_ARATH (E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana OX=3702 GN=At1g66660 PE=2 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 8.761e-34 Identity = 90/261 (34.48%), Postives = 135/261 (51.72%), Query Frame = 1 Query: 919 ADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHF-SAKHKNSALHFLYNEVVE----VTLNV-KNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQSFTKNIQN-RVDNPPSTGFLLVPIESFGSSGD-LKLELCI 1671 D P + P + +D V DCP C E L P++QC NGH+ACS+CC K+ KC C IG RCRA+EKV+E+ V C N+ +GCK T +Y + HEK+C V CSCP+ +CN+V S ++L H S H + V++ +N+ + + +V +EE +G L ++ + G ++V+ IA G L S+ ST+R S K IQ R + +P + SGD K+++CI Sbjct: 63 TDEQSGSPKSSQPVKLQSSD--VLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCNYVSSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIFNMNLGRKKTVVFKEEKEGDLIVVQAFKGLEGVYVTVNRIAHMAPGIRDLSCSLAKLNEYSTLRSGSLVKKIQKVREKMHLEDDLMWIPPKML--SGDHWKMQICI 319 The following BLAST results are available for this feature:
BLAST of gene-KPL71_019030-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019030-mRNA1; organism=Citrus sinensis; type=mRNA; length=2044bpback to top protein sequence of gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=328bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:22515971..22519676- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3706bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22515971..22519676- (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22515971..22519676- >gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019030-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019030-mRNA1; organism=Citrus sinensis; type=CDS; length=987bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22515971..22519676- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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