Transcript Overview
Name | gene-KPL71_019100-mRNA1 |
Unique Name | gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 2255 |
Product | elongator complex protein 5 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon1 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon2 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon3 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon4 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon4_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon5 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon5_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon6 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon6_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon7 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon7_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon8 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon8_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon9 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-exon9_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS1 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS2 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS3 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS4 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS4_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS5 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS5_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS6 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS6_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS7 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS7_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS8 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS8_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS9 | rna-gnl|WGS:JAHMIT|DVS6B01997.t02-CDS9_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | polypeptide |
gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1-protein | Citrus sinensis | polypeptide |
Homology
BLAST of gene-KPL71_019100-mRNA1 vs. DB:SwissProt
Match: ELP5_ARATH (Elongator complex protein 5 OS=Arabidopsis thaliana OX=3702 GN=ELP5 PE=1 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 2.686e-123 Identity = 203/366 (55.46%), Postives = 268/366 (73.22%), Query Frame = 3 Query: 1074 MADTICRTLRDGGLEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASS--LSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEII--NQRLLPKRYGFVQQVQFNLQLSEEERNERAKVVLPFEHQGNGKPIQIYDGRRSLGENK-EEALVSTGKLQPD-EDSGK-GQIIYFR 2150
MA++I R LRDGG EGE APALTI+++ ASPFG DV Y+LT LS+ ILAGKS S+GLV++ +SRSPSFY+ LLK++GI ++SS WI ILDCYTDPLGW ID+ + + L + V +L KL+S IIE G+ L+G GK RF +AIDSV+E++RH+++ V+G+L++LRSH Q+SS+FW L++DLH+ K T+ LEY+S+M A++EP ++ GQR LENL + Q+F KG+FHVRFK R GRVRVM EE V+ +GI F+P+ S D +I + LLPK VQFNLQLSE+ER E+ KVVLPFEHQ +GK +IYDGRRSL + K E +S+ +LQ D SGK G+IIYFR
Sbjct: 1 MAESIFRKLRDGGEEGELAPALTIEETVASPFGLDVSGYLLTNLSSSILAGKSSSQGLVLITFSRSPSFYLQLLKQKGIVVSSSSKWIRILDCYTDPLGW----IDQSSTSFSEGSSLIKLHKCVSDLKKLFSSIIEAGRELVGTGKTRFCVAIDSVNELLRHSAMPLVSGLLTDLRSHAQISSVFWSLNTDLHQEKVTNALEYISTMKANLEPLCPSSDGQRNALENLFSVHQDFGKGRFHVRFKLRKGRVRVMSEEYHVDQSGINFSPISSVDTVIAATKSLLPK-------VQFNLQLSEKERVEKEKVVLPFEHQDDGKSNEIYDGRRSLVDGKIETTPLSSMELQTDVVSSGKGGEIIYFR 355
The following BLAST results are available for this feature:
BLAST of gene-KPL71_019100-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 ( BLAST: C. sinensis DVS_B v1.0)
Total hits: 1
Match Name | E-value | Identity | Description | |
ELP5_ARATH | 2.686e-123 | 55.46 | Elongator complex protein 5 OS=Arabidopsis thalian... | [more] |
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | GENE3D | 3.40.50.300 | | coord: 82..260 e-value: 2.7E-5 score: 25.5 |
IPR019519 | Elongator complex protein 5 | PFAM | PF10483 | Elong_Iki1 | coord: 143..312 e-value: 4.0E-13 score: 49.5 |
IPR019519 | Elongator complex protein 5 | PANTHER | PTHR15641 | ELONGATOR COMPLEX PROTEIN 5 | coord: 1..378 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 363..378 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 334..378 |
None | No IPR available | CDD | cd19496 | Elp5 | coord: 22..210 e-value: 8.32609E-13 score: 63.4184 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019100-mRNA1; organism=Citrus sinensis; type=mRNA; length=2255bp CATCACGACCTGGCAAAAAGAAGTTTCTGATGGTAACTGCACGTGGCGGT ATCATGGAATTTTGTTGTATTAATTGGGGTGTATATGCATACGCGGGCTT cttgattaataaatatttgactttgttttgagttaattcttttattaatt aaaatttaaaagctaaTAAACTGGAAAGCTTgcagttattattttttcag gaAATAGTTAATATTAATGTGCACGTGAAGGGCCCACTCGCGGTCGCAGG GCGTGGCCACTCCCACGTTGCGCAATTGTAGCCCATGCAATTTGGCACTT TCTAGTTTCTACACATGAAAGTTGGGTGCGTCCAAAGACAACCTCCCTCC TGCTTTCACAAAATATTATtcgacctttttttttttaaaatatttggtaa aatcaTCTTTTTTTCACCAAGCGGCCGACGCTTTTATGGGCCAGCTGTCG GCCAACAATCTTTTGGGCCATTAGTTGGGCCTTGTGTTGAGGCTTTGTGt tataatttagtttttaaatcacaattattataaaaaaaattataattatg aaataaaaattaataataaataatacgtataacttttaagtaatatttta ataaaattagtaaaagatAAGTGTgagatcaaattaatttaatttttaaa ctacaataattaatgtttatcaaatatttttatgtctaaatttttaaaat ataatttttcaacatcAATATTAAATAAGACCTAATATATTCTCGtcatt gataataaatttaaatatttatttatgtatttataagAGTAAATTTCATC AAAGTTTTACTCGCGGTATCAAAATTTTACGTGCGGTGCCACTCATACTC TACCGCGGCTACAATTGAGATTCAAATTTTGTATAGATGTTGGCATAACA TTactgaaattttaaagaagtgATAAATTAATGGATCCatgtttcaattt tgaaaagtaaagggaatattttgaaatttttccGTGGCCCTTCATTGCAA AATCCCCAAATTATTACCAAACTAGGGTTTTTGCTTTGGTCACTGTCAGT GGCGAAGGCAGTAGGCACCAACAATGGCTGACACTATCTGCAGGACACTG CGAGACGGAGGCTTAGAAGGAGAACACGCACCTGCTCTCACCATCAAAGA CTCCAAAGCTTCACCCTTCGGTTTCGATGTATTTAATTACGTGCTTACCC AGCTGTCTAACTACATTTTGGCGGGAAAATCTCAGTCGAGAGGCCTCGTT GTTGTTGCGTATTCTCGGAGCCCATCGTTTTATGTGGATTTGTTGAAGAG AAGAGGAATTGATATAGCTTCATCTCATGATTGGATTCACATATTGGATT GTTATACGGATCCACTTGGCTGGAAAAATTGGCTTATCGACAAGGACATC TCACAGGAAGCTTCATCTTTGTCTAGTTTTTGTCAGGATGTGAGAAATTT GGATAAGTTGTACTCTTTGATTATTGAACAGGGTAAagGATTGATTGGAC AAGGGAAAGATCGCTTCTCTATTGCCATTGACTCGGTGAGCGAAATGGTT AGACATGCATCTATCTCATCCGTTGCAGGCATTTTAAGCAACCTCCGTAG CCACGATCAAGTTTCTAGTATCTTTTGGTTGTTACATTCGGACCTTCATG AAATCAAGTTCACCTCTGTTCTTGAGTATTTGTCCTCAATGGTCGCTAGT GTTGAACCATTCAATCAAGCTGCATTTGGACAGAGAGTTGATTTGGAAAA CCTCTCTATGCTTGAACAGAACTTTAGGAAAGGAAAGTTTCATGTTCGGT TTAAGCGAAGAAATGGGCGCGTTCGAGTTATGTGTGAAGAAATACTTGTT GAGCTGGCAGGCATCAAATTTACACCAGTTTTGTCTGaagatgaaataat taatcaacGCCTTTTGCCAAAGCGGTATGGTTTCGTTCAACAGGTGCAGT TTAATCTACAACTGTCAGAGGAGGAGCGAAACGAAAGGGCTAAGGTTGTG CTTCCTTTTGAGCACCAAGGAAATGGTAAACCTATACAAATTTATGATGG TCGAAGATCTCTGGGTGAGAACAAAGAGGAAGCACTTGTCTCAACTGGCA AATTGCAACCTGATGAGGACAGTGGCAAAGGTCAGATAATATATTTTCGT GATTCGGATGATGAGATGCCAGATTCAGATGAGGACCCGGATGATGATTT GGatatataatgatatttttgaatcattttatgataatgaattaatgcca gaACG back to topprotein sequence of gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=378bp MADTICRTLRDGGLEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILA GKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGW KNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSI AIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVL EYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRV RVMCEEILVELAGIKFTPVLSEDEIINQRLLPKRYGFVQQVQFNLQLSEE ERNERAKVVLPFEHQGNGKPIQIYDGRRSLGENKEEALVSTGKLQPDEDS GKGQIIYFRDSDDEMPDSDEDPDDDLDI back to topmRNA from alignment at CM039175.1_Chr6_DVS_B:22891790..22896876- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=5087bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22891790..22896876- (Citrus sinensis CATCACGACCTGGCAAAAAGAAGTTTCTGATGGTAACTGCACGTGGCGGT
ATCATGGAATTTTGTTGTATTAATTGGGGTGTATATGCATACGCGGGCTT
CTTGATTAATAAATATTTGACTTTGTTTTGAGTTAATTCTTTTATTAATT
AAAATTTAAAAGCTAATAAACTGGAAAGCTTGCAGTTATTATTTTTTCAG
GAAATAGTTAATATTAATGTGCACGTGAAGGGCCCACTCGCGGTCGCAGG
GCGTGGCCACTCCCACGTTGCGCAATTGTAGCCCATGCAATTTGGCACTT
TCTAGTTTCTACACATGAAAGTTGGGTGCGTCCAAAGACAACCTCCCTCC
TGCTTTCACAAAATATTATTCGACCTTTTTTTTTTTAAAATATTTGGTAA
AATCATCTTTTTTTCACCAAGCGGCCGACGCTTTTATGGGCCAGCTGTCG
GCCAACAATCTTTTGGGCCATTAGTTGGGCCTTGTGTTGAGGCTTTGTGT
TATAATTTAGTTTTTAAATCACAATTATTATAAAAAAAATTATAATTATG
AAATAAAAATTAATAATAAATAATACGTATAACTTTTAAGTAATATTTTA
ATAAAATTAGTAAAAGATAAGTGTGAGATCAAATTAATTTAATTTTTAAA
CTACAATAATTAATGTTTATCAAATATTTTTATGTCTAAATTTTTAAAAT
ATAATTTTTCAACATCAATATTAAATAAGACCTAATATATTCTCGTCATT
GATAATAAATTTAAATATTTATTTATGTATTTATAAGAGTAAATTTCATC
AAAGTTTTACTCGCGGTATCAAAATTTTACGTGCGGTGCCACTCATACTC
TACCGCGGCTACAATTGAGATTCAAATTTTGTATAGATGTTGGCATAACA
TTACTGAAATTTTAAAGAAGTGATAAATTAATGGATCCATGTTTCAATTT
TGAAAAGTAAAGGGAATATTTTGAAATTTTTCCGTGGCCCTTCATTGCAA
AATCCCCAAATTATTACCAAACTAGGGTTTTTGCTTTGGTCACTGTCAGT
GGCGAAGGCAGTAGGCACCAACAATGGCTGACACTATCTGCAGGACACTG
CGAGACGGAGGCTTAGAAGGAGAACACGCACCTGCTCTCACCATCAAAGA
CTCCAAAGCTTCACCCTTCGGTTTCGATGTATTTAATTACGTGCTTACCC
AGCTGTCTAACTACATTTTGGCGGGAAAATCTCAGTCGAGGTCATTTTAA
TTCTCCCTACTTACAATGATCAATTTTATTTGTCTTTTTATATTAATCAA
GCTTTCCTAATTTATGTTCTTCCTATATTTGTCAATATGCAGAGGCCTCG
TTGTTGTTGCGTATTCTCGGAGCCCATCGTTTTATGTGGATTTGTTGAAG
AGAAGAGGAATTGATATAGCTTCATCTCATGATTGGTGAATTATACTATT
TTCACTTGAATAATACCTGCCTGAAGGCCAACTTGTTTGTCATTTTTTAA
TTACCGTGAAAAAAGAACGCGTTGGTGTTGATTTATAAATTGGTTTCCGT
GGACTTCGTTACTGTTAGTACTTAAATGTAGAAGGTCTGTTTGGTACTCG
GTAGTGTATTGCATTTAGTTTCCATATTAATAACAATGTTGTGGGGGATT
GTGAATGGCTTTTGGTTTACAGGATTCACATATTGGATTGTTATACGGAT
CCACTTGGCTGGAAAAATTGGCTTATCGACAAGGACATCTCACAGGAAGC
TTCATCTTTGTCTAGTTTTTGTCAGGATGTGAGAAATTTGGATAAGTTGT
ACTCTTTGATTATTGAACAGGGTAAAGGTAAATTTTCATTTTTTTTTTCT
TTTGTTTGTTTGTTTAAAGGTCACTTTGGTTGCCTTACCTACGGAAAATA
GGAAAAATCTTCTGTTCACAGCAGCTTTCTCTATAAAAGTGAAAGCCATC
TTGAATACTTGATGATGAAGATAATTAGGTTCTGACGAGCATCTTTTGGA
TGTTTGCTTTTGCTTGTAGGATTGATTGGACAAGGGAAAGATCGCTTCTC
TATTGCCATTGACTCGGTAATTCTATATGCAATAAATGTTAAAATCTTGT
AAGAGTTGCAATTGTAATTGTTTTTAACAGTGTATCGAGCAGGTAACCAC
TCTCCTGTTAATTCTGATGAGCTTCGAGGAAGCTCACTAGAGTGTTTTGA
TTTGTGTTTCATGACAGATGTTGCTTTGGACATTTAGTTGCATCTACTGT
CTTTTGCCTAGGATGTAGTTCAGAAGTTCGGATTTAAAGTGAATCCATTG
TTGAGAAGTTTTATATTCTTCTGGTGGAACCTTCCCGGTGATTGAAAAGT
TTGGAATTGCAGTTTGAAACCTTCAGAAAAGGAGCCCTTCCCTTTCCTGA
GGTGGTGCCAGGAAACTTCCTGTCTAGTACAAAAAAAAAAAAAAAAACAA
TGTGAAAAATAGGCTCAGCCAGAGGAAAGATGCGTAGGGTCTCAATTGAA
AATTATGAGACATATCAGAAAGCAAAGCAAAGATCTTATGAGATTTATGG
GCCTGTGAGACTTTGCATTTTAGGTGCAACCATGATGCTCAAACTAAACA
TTTGGGCAACTCACAAGCTGTTAAAGACCACTTCTGGAGTACTCTTTTGT
CTTATTTTGGACAAGCATGGCATGGTCACATGTGAAGTGGAAGAAGTGAC
AGTCTCTTTGATTGTTATTCATTACTTTTATTCCCCAGCCAGTGAGAGGA
TTAGTGTCTCATGGGTCATGTTTAATGCAGTGAAAAGTATTTTTTAGACT
AGGCAATATTTGTTTGAAATTCTAAGTATTATGTATACTATTTACTATAA
TGTGAGAATGAATCCTTCTTTACTGCAGTGAGTATCTCAACCTAGAACAG
TTTTTTTTTTTTTAATTTTAAGGTTGAAATTTCGTTATTTTTTCTTTGTT
AAAATTAATGATCGGATTAGTGTGTTTATTCTTGAATCTGTGCTTTCCTT
TCTTTATAATTAATTTCATTTTAAAATATTCATTTAAGTTTTGCAAAAGC
CTGTTTTGGTGATAATGGAAGTCATATTGGAATGAAATGGATAACTAATT
ACGAGCTCATGCCTCACACACTATCTCTGACATGTTTATCTTTTTATGAT
ATTCTGATCCTTCATGCAATTAGTTTTAGAGTTTCCATATTGGCTATGGA
GGTTTCTCAGCTGTGGTTTATACTATTGCCTGGTAAAAGTTGCTAGATGA
TTTTTCGTTCGAATTTTTTGTAGGAGTAGGAAAATGCTATTGCCCTTAAC
TTTTTTCTTTTAAGGGATTTTCAGTTTGGTAAAGAAATACTTTAGAAATT
TAAAATGAAGGTGATGAAAAGTGCTATTTGATATATGTTTGTTAATGCTG
CTAGTTTCTGGCTTTTCTTTCCAAATTATTTCTCTCTTATTTACTTCTGA
TGGGCTCTTCACAATTATTAGGTGAGCGAAATGGTTAGACATGCATCTAT
CTCATCCGTTGCAGGCATTTTAAGCAACCTCCGTAGCCACGGTATATGCA
TGATTTACCTCTTTTCTAAAGCTCTCTTTTTATTATACAATCTAATTGTT
AGTCTAGCCTGTAGTTATTATTCTACGGATGAGCCTTTTTTTTTTTTTTG
GTTGATGCTGCATTACTATTTCCTTCTTGTGAAAAACCACTAACTGTATT
TTATCCTTTAAATTGATTAAAACCTATTTGTAGACCTGATATATACCTTT
GGTGTTTGACTGTTAAAATTGTCAGTTGTATAGGAATTTCTGAAAGTTTT
AGGTTTATGTGCTGCGTGCTTGCTTTTGATGCCATAGTTTCTCCATTGTT
CTATGGCTGCAGATCAAGTTTCTAGTATCTTTTGGTTGTTACATTCGGAC
CTTCATGAAATCAAGTTCACCTCTGTTCTTGAGTATTTGTCCTCAATGGT
CGCTAGTGTTGAACCATTCAATCAAGCTGCATTTGGACAGAGAGTTGATT
TGGAAAACCTCTCTATGCTTGAACAGAACTTTAGGAAAGGAAAGTTTCAT
GTTCGGTTTAAGCGAAGAAATGGGCGCGTTCGAGTTATGGTAATATCTAT
GTTTCTCTACTTTTGTGGAGAATGTGCTGATCTATTATACAGAAAATCAA
GTTATATTTATTTTACTCCATTGCTAGTGTGAAGAAATACTTGTTGAGCT
GGCAGGCATCAAATTTACACCAGTTTTGTCTGAAGATGAAATAATTAATC
AACGCCTTTTGCCAAAGGTCAGTATTATAGCTTTATCTTGATTCTAGTGG
ATCTCTTGGACATCTCCTTTTCTCCTTCTCAGTCACTTTTGTGTGTACAA
CATAAACTTTCCCCATATGGTATTGGTTAACAGAAGAATGGTTCGAGATA
TATACATCAGAAGAAGAGCCAAAAAATTAAAAATTAAAAAAAAAAAATTG
TGCTTGTATGTGCACGCACTTGCAAATGCATTTACTAATCCTAAACAGCT
TCAAGCATGTACATGTTAGCAGCAAAAGAGTTAATATCCTTGTTTATTAT
TATTATTATTATTGTGATATTTACTTGTGCAGCGGTATGGTTTCGTTCAA
CAGGTGCAGTTTAATCTACAACTGTCAGAGGAGGAGCGAAACGAAAGGGC
TAAGGTTGTGCTTCCTTTTGAGCACCAAGGTATGAGAACACTGAATAGAG
ATCGGAATTAGATTTTATTTTCAGTTCTTAGTTAAACAATATTTTCATTT
TTATAATTATAAAAAAATGCTTTCAACTTTATTTTTTGTTATATCCTTAC
TTGACTTTTGTATATTAGAAATTTTTATTTTCTACAATATTAATGGTTCA
GGAAATGGTAAACCTATACAAATTTATGATGGTCGAAGATCTCTGGGTGA
GAACAAAGAGGAAGCACTTGTCTCAACTGGCAAATTGCAACCTGATGAGG
ACAGTGGCAAAGGTCAGATAATATATTTTCGTGATTCGGATGATGAGATG
CCAGATTCAGATGAGGACCCGGATGATGATTTGGATATATAATGATATTT
TTGAATCATTTTATGATAATGAATTAATGCCAGAACG back to topCoding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:22891790..22896876- >gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019100-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019100-mRNA1; organism=Citrus sinensis; type=CDS; length=1137bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:22891790..22896876- (Citrus sinensis ATGGCTGACACTATCTGCAGGACACTGCGAGACGGAGGCTTAGAAGGAGA ACACGCACCTGCTCTCACCATCAAAGACTCCAAAGCTTCACCCTTCGGTT TCGATGTATTTAATTACGTGCTTACCCAGCTGTCTAACTACATTTTGGCG GGAAAATCTCAGTCGAGAGGCCTCGTTGTTGTTGCGTATTCTCGGAGCCC ATCGTTTTATGTGGATTTGTTGAAGAGAAGAGGAATTGATATAGCTTCAT CTCATGATTGGATTCACATATTGGATTGTTATACGGATCCACTTGGCTGG AAAAATTGGCTTATCGACAAGGACATCTCACAGGAAGCTTCATCTTTGTC TAGTTTTTGTCAGGATGTGAGAAATTTGGATAAGTTGTACTCTTTGATTA TTGAACAGGGTAAAGGATTGATTGGACAAGGGAAAGATCGCTTCTCTATT GCCATTGACTCGGTGAGCGAAATGGTTAGACATGCATCTATCTCATCCGT TGCAGGCATTTTAAGCAACCTCCGTAGCCACGATCAAGTTTCTAGTATCT TTTGGTTGTTACATTCGGACCTTCATGAAATCAAGTTCACCTCTGTTCTT GAGTATTTGTCCTCAATGGTCGCTAGTGTTGAACCATTCAATCAAGCTGC ATTTGGACAGAGAGTTGATTTGGAAAACCTCTCTATGCTTGAACAGAACT TTAGGAAAGGAAAGTTTCATGTTCGGTTTAAGCGAAGAAATGGGCGCGTT CGAGTTATGTGTGAAGAAATACTTGTTGAGCTGGCAGGCATCAAATTTAC ACCAGTTTTGTCTGAAGATGAAATAATTAATCAACGCCTTTTGCCAAAGC GGTATGGTTTCGTTCAACAGGTGCAGTTTAATCTACAACTGTCAGAGGAG GAGCGAAACGAAAGGGCTAAGGTTGTGCTTCCTTTTGAGCACCAAGGAAA TGGTAAACCTATACAAATTTATGATGGTCGAAGATCTCTGGGTGAGAACA AAGAGGAAGCACTTGTCTCAACTGGCAAATTGCAACCTGATGAGGACAGT GGCAAAGGTCAGATAATATATTTTCGTGATTCGGATGATGAGATGCCAGA TTCAGATGAGGACCCGGATGATGATTTGGATATATAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0033588 | elongator holoenzyme complex |
Vocabulary: Biological Process
Term | Definition |
GO:0002098 | tRNA wobble uridine modification |
|