Transcript Overview
Name gene-KPL71_019208-mRNA2
Unique Name gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1
Type mRNA
Organism Citrus sinensis (Sweet orange)
Sequence length 928
Product E3 ubiquitin-protein ligase
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide
gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon1 rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon2 rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon3 rna-gnl|WGS:JAHMIT|DVS6B02105.t02-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B02105.t02-CDS1 rna-gnl|WGS:JAHMIT|DVS6B02105.t02-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
rna-gnl|WGS:JAHMIT|DVS6B02105.t02-CDS2 rna-gnl|WGS:JAHMIT|DVS6B02105.t02-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
Homology
BLAST of gene-KPL71_019208-mRNA2 vs. DB:SwissProt
Match:
RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)
HSP 1 Score: 174.096 bits (440), Expect = 4.963e-52
Identity = 104/190 (54.74%), Postives = 126/190 (66.32%), Query Frame = 2
Query: 329 MGSVCCCFHVEDFEDYMNPNSSVYRNCMCLSCFIQHVLNVYTSLFRRGDVHSVPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRLQHEGLVSRREKGSSQFHEESEPLRSDNDVESESFSAGD-KWNDSSCEDGSKEQRXXXXXXXXXXXXXXGFAYI-------YSPSEDEDVCPTCLE 874
MG V CF VED ++YMNPNSSVYRNC C+ C + LN+Y S+FRRG+ S+PSS+Q AS+TS++S DN LS+ +RS PRPLPYDADPRYFR LVSRREKGSS HEE EPLRSD+D +SESF G KW ++ K+ + + S S + I Y SEDEDVCPTCLE
Sbjct: 1 MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQATASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLE 186
The following BLAST results are available for this feature:
BLAST of gene-KPL71_019208-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 1
100 200 300 400 500 600 700 800 900 Expect = 4.96e-52 / Id = 54.74 Sequence RING3_ARATH
Match Name E-value Identity Description
RING3_ARATH 4.963e-52 54.74 E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
100 200 300 400 500 600 700 800 900 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 104..130
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 104..154
Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019208-mRNA2; organism=Citrus sinensis; type=mRNA; length=928bp GGATACTTTGTCAGTGTTGAATTTTAGCTCGTGATCACAATAGGAAAGAA ACTTTTTTCTACTCTTGAAGATAGGTGAATATACCACAAAATTATTAGTG CAGTTACGAAGCTAGTTCAACATTTGTTAACAAGGGAGGGAGGGTTCTAG TTCGCGGAGCCAGTGAGACTTCTGCGAGCTCAGTGTCCTCTCTCATTGTA TATATTGTTATATACTAATTGCTTCAAGAATTCTTTCTTGATGCATATGC TCAGTGGGGCTTGATCTTGCCAATGAGACTGGACTATCGCCGTTGCGGGT AGAAAGGAAGATATTAAAGTTTACAACAATGGGTTCTGTTTGCTGCTGTT TTCATGTGGAGGATTTTGAGGATTATATGAATCCAAACAGTTCTGTATAT AGGAATTGCATGTGTCTCAGCTGCTTTATTCAGCATGTTTTAAATGTGTA TACCTCATTATTCCGAAGAGGGGATGTGCATTCTGTCCCTTCATCCATAC AGGGGGCAGCATCAATGACTTCTACTGCTTCCCTTGACAATTCTCTCTCT GATATGTACCGATCTCCTCCGAGACCCTTGCCTTATGATGCTGATCCTAG ATATTTCCGCTTGCAACATGAAGGATTGGTTTCAAGGCGTGAGAAGGGTT CAAGCCAATTCCATGAGGAGTCAGAACCTCTAAGAAGTGACAATGATGTG GAATCGGAATCTTTTAGTGCAGGAGACAAGTGGAATGATTCATCCTGTGA AGATGGATCGAAAGAACAACGTTCTAAATCCTCAGTTACGCTTTCATCGG CAAAATCAACAGCTGGATTTGCGTATATTTATTCTCCAtcagaagatgaa gatgtCTGTCCAACATGTCTTGAAGGTACATTTTGAGTGCagttttatgc tttttttatCGCATAGGTAACTTTGTAT back to top protein sequence of gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1
>gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=185bp MGSVCCCFHVEDFEDYMNPNSSVYRNCMCLSCFIQHVLNVYTSLFRRGDV HSVPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRLQHEGL VSRREKGSSQFHEESEPLRSDNDVESESFSAGDKWNDSSCEDGSKEQRSK SSVTLSSAKSTAGFAYIYSPSEDEDVCPTCLEGTF back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:23648920..23650769-
Legend: exon polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1850bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:23648920..23650769- (Citrus sinensisGGATACTTTGTCAGTGTTGAATTTTAGCTCGTGATCACAATAGGAAAGAA
ACTTTTTTCTACTCTTGAAGATAG GTATTGAAAGGAAGAAAATTTGTCAC
TTTCATGCCAAAAATTGTAAATTTTGGACAAGTGATTTTTTTTTTCTTGG
ATAAAAATTTGTTATTGCAACAAGGAATCTTTCATTCTTTTTGCATTAAT
TTAGGATGTAAGGTATGGCGACATCCTTTGACTAGTATGAGATTTTTTTT
TCTTCTCAAAAGTTAACCTTTGAATGCTGATTAATGAAGAAATGTAAGTT
CAGATTGCATTAGTTTGCACTTTTAGCTGCATGGGCATTTGTTATTTAAG
TTCATGAATTTCTTTTGAGAATAGTTTGTCGCATGCTTTTCCTTTCTCTT
ATTCAACATGGTTGTTTAATGTGATTTTCTTGTATATTCCAGGTGAATAT
ACCACAAAATTATTAGTGCAGTTACGAAGCTAGTTCAACATTTGTTAACA
AGGGAGGGAGGGTTCTAGTTCGCGGAGCCAGTGAGACTTCTGCGAGCTCA
GTGTCCTCTCTCATTGTATATATTGTTATATACTAATTGCTTCAAGAATT
CTTTCTTGATGCATATGCTCAGTGGGGCTTGATCTTGCCAATGAGACTGG
ACTATCGCCGTTGCGGGTAGAAAGGAAGATATTAAAGTTTACAACAATGG
GTTCTGTTTGCTGCTGTTTTCATGTGGAGGATTTTGAGGATTATATGAAT
CCAAACAGTTCTGTATATAGGAATTGCATGTGTCTCAGCTGCTTTATTCA
GCATGTTTTAAATGTG GTATGTCTCATGCATCTTTTACTTAGTCTTGTTT
TTCGTTTAAGATTCACTTTCTTCAATGTCAGTTTAACAGTTTTGTTACAA
CTTATGTTGCCATAATGGGCCTATTGTTGAAACTGTCAAGAGTTCTTTCC
CATGTGTGAATATATGCGAACTAGACTACTAGTGGTTAATACTTTTTCTG
TAATTTGGTTCCATGCGACTATTCTCTGAAGATCTTACTCTATCAATGTT
TGTGAGGACATATGACTATGTTTCTGGAGTGACTGAAGACCTGTTTATAA
TTCAGTTCTGATTACTCAGTTCAAGCACATTTAGTGCAAGTGTCTTTTGG
ATTTCATTGCAAAACTTTCTAGATCAGTATGATTATTTTCGTCAAGGTGC
TTGTATTTTGTAAGCAAGGATGACACGCACAAATAGAGAATGAGCAAATT
AGTTTGTGAAAATTTGAATTATGTATTGTAAAGATTATTCATGAAAGTTT
AATATCCATCATTCCCCTGGATGATGTTCCTAAATTTCACTTCTCTTATT
TCTTTTTTAATTGTCTGTAGTATACCTCATTATTCCGAAGAGGGGATGTG
CATTCTGTCCCTTCATCCATACAGGGGGCAGCATCAATGACTTCTACTGC
TTCCCTTGACAATTCTCTCTCTGATATGTACCGATCTCCTCCGAGACCCT
TGCCTTATGATGCTGATCCTAGATATTTCCGCTTGCAACATGAAGGATTG
GTTTCAAGGCGTGAGAAGGGTTCAAGCCAATTCCATGAGGAGTCAGAACC
TCTAAGAAGTGACAATGATGTGGAATCGGAATCTTTTAGTGCAGGAGACA
AGTGGAATGATTCATCCTGTGAAGATGGATCGAAAGAACAACGTTCTAAA
TCCTCAGTTACGCTTTCATCGGCAAAATCAACAGCTGGATTTGCGTATAT
TTATTCTCCATCAGAAGATGAAGATGTCTGTCCAACATGTCTTGAAGGTA
CATTTTGA GTGCAGTTTTATGCTTTTTTTATCGCATAGGTAACTTTGTAT
back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:23648920..23650769-
>gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019208-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019208-mRNA2; organism=Citrus sinensis; type=CDS; length=558bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:23648920..23650769- (Citrus sinensis ATGGGTTCTGTTTGCTGCTGTTTTCATGTGGAGGATTTTGAGGATTATAT GAATCCAAACAGTTCTGTATATAGGAATTGCATGTGTCTCAGCTGCTTTA TTCAGCATGTTTTAAATGTGTATACCTCATTATTCCGAAGAGGGGATGTG CATTCTGTCCCTTCATCCATACAGGGGGCAGCATCAATGACTTCTACTGC TTCCCTTGACAATTCTCTCTCTGATATGTACCGATCTCCTCCGAGACCCT TGCCTTATGATGCTGATCCTAGATATTTCCGCTTGCAACATGAAGGATTG GTTTCAAGGCGTGAGAAGGGTTCAAGCCAATTCCATGAGGAGTCAGAACC TCTAAGAAGTGACAATGATGTGGAATCGGAATCTTTTAGTGCAGGAGACA AGTGGAATGATTCATCCTGTGAAGATGGATCGAAAGAACAACGTTCTAAA TCCTCAGTTACGCTTTCATCGGCAAAATCAACAGCTGGATTTGCGTATAT TTATTCTCCATCAGAAGATGAAGATGTCTGTCCAACATGTCTTGAAGGTA CATTTTGA back to top