gene-KPL71_019292-mRNA1 | Citrus Genome Database

Transcript Overview


Name	gene-KPL71_019292-mRNA1
Unique Name	gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	3115
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Valencia DVS_B genome v1.0	2023-04-13
BLAST: C. sinensis DVS_B v1.0	2023-04-17
InterPro: C. sinensis DVS_B v1.0	2023-04-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caudvbL154	Citrus australis genome v1.0 (UQ)	Citrus australis
ccdvbL100	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cledvbL085	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmdvbL266	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csidvbL352	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cmjdvbL229	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
csndvbL314	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL337	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
ccrdvbL136	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrdvbL325	Citrus australasica CRC3672 genome v1	Citrus australasica
csgdvbL057	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cizdvbL101	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cmmdvbL321	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caadvbL349	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cigdvbL248	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
clxdvbL269	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
csjdvbL252	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL516	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cradvbL401	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchdvbL194	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciudvbL390	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgadvbL409	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cumdvbL330	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crcdvbL318	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cstdvbL221	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmdvbL242	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL405	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cridvbL198	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cridvbL420	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Cms110790.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
g18612.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
g19690.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Cic125780.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
huyou00029395-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
g17985.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
hap1-g16530.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
gene-CUMW_096780-mRNA1	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
CMJ_chr6_022740.3	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
Egl157050.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
NM_gene41576.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
hap1-g17636.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
g18979.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Ciclev10011620m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
g12169.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
Citropsis113470.5	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
Cg6g023800.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
CP6g000198.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
g17443.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Cau_v1.alternate_g18094.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
Cau_v1.primary_g19176.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
evm.model.ctg149.436	Citrus limon cv. Xiangshui genome v1.0	Citrus limon

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
MERGED: EVM_prediction_chr3.2_youzi.2218; EVM_prediction_chr3.2_youzi.2219	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
MERGED: EVM_prediction_chr3.1_tiancheng.2171; EVM_prediction_chr3.1_tiancheng.2172	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
drCitSine.Jinhong.1.0.HA6g02180.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HB6g02010.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
CsN06G001730.1	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
MERGED: EVM_prediction_HIC_ASM_8.170; EVM_prediction_HIC_ASM_8.171	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
Cs6g20550.1	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KPL71_019292	gene-KPL71_019292_Citrus_sinensis_DVS_B_v1	Citrus sinensis	gene

The following exon feature(s) are a part of this mRNA:

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	polypeptide
gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1-protein	Citrus sinensis	polypeptide

Homology

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BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt
Match: YTFP_BACSU (Uncharacterized protein YtfP OS=Bacillus subtilis (strain 168) OX=224308 GN=ytfP PE=4 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.855e-36
Identity = 119/412 (28.88%), Postives = 194/412 (47.09%), Query Frame = 2

Query: 1964 VVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIGCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIA--------SGSSQQGHRLAAQLGHSIVDPVPS---------------LFTFKIADSQLTELSGVGP--------MLVTHWGLSGPVILRLSAWGARN-------PVKINLLLTSRAPRLHSTLLLFEIIAFLPFIPLQKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS 3082
            V++I+KG  L  K+ ISGGGRCNVTN    +++I   H P G+  F  S FS     D + +F + G++LK ED GR+FPV+D + SV+  LL   K       V ++T + + +   ++     ++       N  E I +  ++IA        +GS+  G+  A   GH+I +  P+               L    + D  ++ L+  G         ML TH+GLSGP ILR S +  +        P++I+L      P ++   L  ++   L   P  K+ + N   P   + +R+  ++L + G+S +  ++ +  +      R  K  T+   G       FVT GGV + EI    M SK    L+F GE+L++ G TGG+N  +A   G +AG + G+ +
Sbjct:   29 VLLIDKGNKLGRKLAISGGGRCNVTNRLPVEEII--KHIP-GNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSVVDALLNRLKQL----RVTIRTNEKIKSVLYEDGQAAGIV------TNNGEMIHSQAVIIAVGGKSVPHTGSTGDGYEWAEAAGHTITELFPTEVPVTSGEPFIKQKTLQGLSLRDVAVSVLNKKGKPIITHKMDMLFTHFGLSGPAILRCSQFVVKELKKQPQVPIRIDLY-----PDINEETLFQKMYKELKEAP--KKTIKNVLKP--WMQERYLLFLLEKNGISPNVSFSELPKDPFRQFVRDCKQFTVLANGTLSLDKAFVTGGGVSVKEIDPKKMASKKMEGLYFCGEILDIHGYTGGYNITSALVTGRLAGLNAGQYA 418

[Close]

BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt
Match: Y933_HAEIN (Uncharacterized protein HI_0933 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0933 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.148e-24
Identity = 104/396 (26.26%), Postives = 173/396 (43.69%), Query Frame = 2

Query: 1961 NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIGCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHRLAAQLGHSIVDPVPSL--FTFKIADSQLTELSGV---------------GPMLVTHWGLSGPVILRLS-AWGARNPVKINLLLTSRAPRLHSTLLLFEIIAFLPFIPLQKQKVLNSCPPEFCLVKRFWKYILG---REGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 3076
            +V + + GK +  K+ +SGGG CN TN       +   HY   +  F  S  + +   D +S  ++ G+    ++ G++F   + +  ++  L +E    G    ++L++         ++   +F+L+V          I A     +   G++  G+++A Q G  ++ P  SL  FT++  D  LT LSG+                 +L TH G+SGP +L++S  W     V+I+LL               EI       P Q  K +        LV+   K ++     +G+  D + A++S   + ++   + H      G   ++   VT GGV    IS  TMES     L+F GEVL+V G  GG+NFQ AWS  Y    SI +
Sbjct:   29 SVTVFDNGKKIGRKILMSGGGFCNFTNLE-----VTPAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLF-CDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTHRGISGPAVLQISNYWQPTESVEIDLLPNHNVEE--------EINQAKQSSPKQMLKTI--------LVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400

[Close]

BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt
Match: BAIN_CLOS5 (3-dehydro-bile acid delta(4,6)-reductase OS=Clostridium scindens (strain ATCC 35704 / DSM 5676 / VPI 13733 / 19) OX=411468 GN=baiN PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.018e-21
Identity = 101/413 (24.46%), Postives = 176/413 (42.62%), Query Frame = 2

Query: 1961 NVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIGCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGV-------------------GPMLVTHWGLSGPVILRLSAWGARNPVKINLLLTSRAPRLHSTLLLFEIIAFLPFIPL-QKQKVLNS----CPPEFC-----------LVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTS 3067
             V I+E+ + +  K+  +G GRCN+TN    D     G  P    EF  +     G  +T+ +F+  G+  K+   G ++P SD ++SV+  L  E + +     V + TG  V   +   + + F+++ + +         AD +++A G        S   G+ LA  +GH++   VP+L   K+      + +GV                   G M +T +G+SG  + ++S   A+               L+    +   + FLP +   Q +K  N+    CP   C           L+ R  +    R+      L  +   +    + R  K   L +     F +  V AGGV   E+  +T+ES+    L+  GE+L+V+G+ GG+N Q AW+ GY+AG +
Sbjct:   28 QVFILEQKENIGKKILATGNGRCNLTN-EAMDASCYHGEDP----EFARNVLKQFGYGETLEFFASLGLFTKSRG-GYIYPRSDQAASVLELLEMELRRQ----KVKIYTG--VRVEALKLSAKGFVIRADGQRF------PADRVILACGGKASKSLGSDGSGYALARSMGHTLSPVVPALVQLKVKKHPFAKAAGVRTDAKVAALLGRQVLAEDTGEMQITAYGISGIPVFQISRHIAKG--------------LYEGKEMKVRVDFLPEMEASQVRKAFNTHLDKCPYATCQEFLTGIFPKKLIPRLLELSHIRQNFPASELKPAQWED----LIRACKQTLLTIEDTNGFDNAQVCAGGVRTGEVYPDTLESRYADGLYLTGELLDVEGICGGYNLQWAWATGYLAGRA 404

[Close]

BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt
Match: YHIN_ECOLI (Uncharacterized protein YhiN OS=Escherichia coli (strain K12) OX=83333 GN=yhiN PE=4 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 6.784e-20
Identity = 110/391 (28.13%), Postives = 173/391 (44.25%), Query Frame = 2

Query: 1964 VVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIGCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIAS--------GSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTE---LSGVG---------------PMLVTHWGLSGPVILRLSA-WGARNPVKINLLLTSRAPRLHSTLLLFEIIAFLPFIPLQKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGY 3052
            V++I+ GK P  K+ +SGGGRCN TN +     +  G Y   +  F  S  +     D +   + HG+    +  G++F   DS+  ++  L+ E +      +V  +    V + + D  G  F L +   T   V C   + L+IA+        G+S  G+++A Q G +++     L  F +    L E   L+GV                 +L TH GLSGP +L++S+ W     V INLL     P +     L E     P   L K  +    P    LV+R     L + G   D     ++     ++   L    ++  G   ++   VT GGV  +E+S  TME++  P L+F GEV++V G  GG+NFQ AWS  +
Sbjct:   29 VLLIDNGKKPGRKILMSGGGRCNFTNLY-----VEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF-CDDSAQQIVDMLVDECEK----GNVTFRLRSEVLSVAKDETG--FTLDLNGMT---VGC---EKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLL-----PDVDLETFLNEQRNAHPNQSL-KNTLAVHLPKR--LVER-----LQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAW 388

The following BLAST results are available for this feature:

BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt

BLAST of gene-KPL71_019292-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
YTFP_BACSU	2.855e-36	28.88	Uncharacterized protein YtfP OS=Bacillus subtilis ...	[more]
Y933_HAEIN	3.148e-24	26.26	Uncharacterized protein HI_0933 OS=Haemophilus inf...	[more]
BAIN_CLOS5	8.018e-21	24.46	3-dehydro-bile acid delta(4,6)-reductase OS=Clostr...	[more]
YHIN_ECOLI	6.784e-20	28.13	Uncharacterized protein YhiN OS=Escherichia coli (...	[more]

InterPro

Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00368	FADPNR	coord: 224..242 score: 24.21 coord: 405..427 score: 18.05 coord: 59..78 score: 39.92
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 252..397 e-value: 9.6E-87 score: 293.5
None	No IPR available	PFAM	PF03486	HI0933_like	coord: 59..271 e-value: 1.4E-46 score: 159.0 coord: 272..450 e-value: 4.9E-44 score: 150.7
None	No IPR available	SUPERFAMILY	160996	HI0933 insert domain-like	coord: 251..398
IPR023166	HI0933-like insert domain superfamily	GENE3D	1.10.8.260		coord: 307..380 e-value: 9.6E-87 score: 293.5
IPR004792	3-Dehydro-bile acid delta(4,6)-reductase-like	TIGRFAM	TIGR00275	TIGR00275	coord: 60..449 e-value: 4.4E-88 score: 293.7
IPR004792	3-Dehydro-bile acid delta(4,6)-reductase-like	PANTHER	PTHR42887	OS12G0638800 PROTEIN	coord: 50..458
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 60..447 e-value: 9.6E-87 score: 293.5
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 60..452

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM039175.1_Chr6_DVS_B:24202895..24209625+
coding sequence from alignment at CM039175.1_Chr6_DVS_B:24202895..24209625+

mRNA sequence

>gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019292-mRNA1; organism=Citrus sinensis; type=mRNA; length=3115bp
aaatttattttttttaagcactCATCGATATGATCCATTTGATATTATAA
GCCATACAATTCCACTCATGACTCACCTATCCAAATTATCTCAATTCATT
cacttctatttttatttccaCCAAATCACCAACTAGGGATGGTAAATTAA
TGGACTAGGCCAGACTTTTCCAAGTTCAGGATCAAAGCTCATAACTTCAT
ACTAGGAAAAATATAAGGTTCAGGTCAGggtttccaaatattttttaaat
tattgtgagTTTATAATGaggtaataattaataatgaattaaagaaaatg
attatttttaaataaataaataaataaaagtttacagatttttttttaat
attggatTCTCTAACCTAAGTAccctcttaattaattaaagattaagAGA
AagtttagtattttattttttaattttttttgtatcatCATTGgatttct
cttcttttatttttattagtattttttagattttaatttataaatttata
tttaaaaataaataaaagaccAAACCTGGACTGAGTTAGAAGTGGTATAG
ATACCCACCCAGCCCAGATCCAGACCAGACCTGACCTATGTTGTCTTAAT
AAAATCTGGCCCAgggtaataaataaattggttcCCAGTATTGATTTTCA
TTACCCAGTTATTTCCGAGTACGGGTTTGGGCATGACCCAAAAAAGCTAG
AACTTGAAACCGTGCCTACTGCctagttaaattatttaacttaaaaaaat
taaagataaaaaaatatagggaaAATGACACATAGATCCCCAACATTTGA
ATAAGGGACACAAAACCCcctaatgtttcaaaaaagacactcAGACCCTC
ATTTGTTaacagaaattataattttaaagtgtaATTACCATTATGCCCTT
atagcatattaaaaaataattgttcattGTCCAATTTAttcctatattat
taataaaattacgaatataacttcattatccaatttttccatttaatttt
tgtcaaattttctcttcaaactaaataaatttaatccattgctcaagaat
aaaaataaattaaattgattactaatataataaaaataacaattctcaat
aacaattctccatttaaacttatataatcaacaaaataaaaaaaatttgg
ttacaacaataattacaaaatcttaATTGTACTAAATAACATATCCAATA
GATTGACATATGgagaattgttatttttattatattaataatcaatttaa
tttatttttattcttgagcaatggattaaatttatttagtttagagagaa
aatttgacaaaaattaaatgaaaaaattgagtAATGAAGTTATattcgta
attttattaataatataggaaTAAATTGGACaatgaacaattatttttta
atatgctataagggtataatagtaattacactttaaaattataattcctG
TTAATAAATGGGGGTCTGAgtgtcttttttaaaatattaaaaaattttac
gtCCTTTATTCAAACATTGGGGTCTCTGTGTCCTTTTCCCAAAAATATAT
ACCTAACCCTTAACCTTTACCCATTTGCAAACACTAAGCCTAAACTCAAT
AGCGCACACACAACACAAGCTTGAAGCCGTTACCTCCGACTCTCGAAGTA
GCCACAATCCACTGACTTGCATCTCCATCACGCACCGCACGTTTGCACCT
CCAGCACGCATCACATGTCTGCTCTTCTTACCTCAAGCATGCATCGTACG
TGCCGCAATCCAAAGTTTGCTGTCTCTTTAGATACTGCCAGTACCAGAAG
CAACTGTAAATATCTTCTTTTAACctctaaaaaaagaaaacttaccACAG
CTGCCATCCCCTTCACTCATACTTCAAGTGAAGAGCTATTGGTGGTCGTT
GGAGGAGGAGCAGCTGGAGTTTATGGAGCTATTAGAGCTAAAACTGTGGC
ACCTAAGCTTAATGTTGTCATTATAGAGAAAGGAAAGCCTCTTTCaaagG
TTAAAATCTCTGGGGGAGGCAGGTGCAATGTGACTAATGGGCATTGTGCT
GATAAAATGATTTTGGCAGGGCATTATCCTAGGGGTCACAAAGAATTCAG
AGGATCTTTCTTCAGCTTGCACGGGCCTATGGATACAATGTCCTGGTTTT
CTGACCATGGAGTGGAACTGAAGACTGAGGATGATGGAAGGGTTTTTCCT
GTCAGTGACAGTTCTTCTTCAGTAATTGGTTGTCTTTTGACTGAAGCAAA
GCATAGGGGAGTTGCTCCATCAGTTGTTCTGCAGACTGGCAAAGTTGTAA
CAACTGCATCATCTGATAATGCTGGCCGGAAGTTTCTTCTCAAGGTTGAG
AAACGTACGATGAATTTAGTTGAATGTATTGAAGCTGATTATCTATTGAT
TGCTAGTGGAAGTAGCCAGCAGGGCCATAGACTTGCAGCTCAACTTGGTC
ATTCAATTGTAGATCCAGTACCTAGCCTATTCACTTTTAAGATTGCAGAT
TCACAATTAACTGAGCTATCGGGTGTTGGCCCCATGTTAGTCACCCATTG
GGGACTTAGTGGACCAGTAATTCTTCGGCTATCTGCTTGGGGTGCCCGTA
ACccagttaaaattaatttgcttcTGACTTCACGGGCTCCACGACTACAT
TCTACTTTGTTGCTTTTTGAGATAATTGCTTTCCTTCCATTCATTCCTTT
ACAGAAGCAAAAAGTGCTCAATTCTTGTCCTCCGGAATTCTGCCTCGTGA
AGAGATTCTGGAAATATATATTGGGTCGTGAGGGTTTAAGTGGAGATACA
TTGTGGGCTTCCGTTTCAAATAACTCTTTAATTTCTATTGCTCGGCTTCT
TAAGCATTGTACATTGGAAGTTGCTGGCAAGGGCCAATTCAAGGATGAAT
TTGTCACTGCTGGAGGTGTTCCCTTGTCAGAGATCTCTCTGAACACAATG
GAAAGCAAAATACATCCACGTTTGTTCTTTGCTGGAGAGGTACTAAATGT
TGATGGGGTGACTGGTGGCTTTAATTTCCAAAACGCTTGGTCTGGTGGAT
ACATTGCCGGAACAAGTATCGGCAAGCTATCAAATGATGCTACTCTCAAA
AACAGAggcttttaa

protein sequence of gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1

>gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=466bp
MSALLTSSMHRTCRNPKFAVSLDTASTRSNCKYLLLTSKKRKLTTAAIPF
THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG
GGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGV
ELKTEDDGRVFPVSDSSSSVIGCLLTEAKHRGVAPSVVLQTGKVVTTASS
DNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD
PVPSLFTFKIADSQLTELSGVGPMLVTHWGLSGPVILRLSAWGARNPVKI
NLLLTSRAPRLHSTLLLFEIIAFLPFIPLQKQKVLNSCPPEFCLVKRFWK
YILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAG
GVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGT
SIGKLSNDATLKNRGF

mRNA from alignment at CM039175.1_Chr6_DVS_B:24202895..24209625+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=6731bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:24202895..24209625+ (Citrus sinensis
aaatttattttttttaagcactCATCGATATGATCCATTTGATATTATAA
GCCATACAATTCCACTCATGACTCACCTATCCAAATTATCTCAATTCATT
cacttctatttttatttccaCCAAATCACCAACTAGGGATGGTAAATTAA
TGGACTAGGCCAGACTTTTCCAAGTTCAGGATCAAAGCTCATAACTTCAT
ACTAGGAAAAATATAAGGTTCAGGTCAGggtttccaaatattttttaaat
tattgtgagTTTATAATGaggtaataattaataatgaattaaagaaaatg
attatttttaaataaataaataaataaaagtttacagatttttttttaat
attggatTCTCTAACCTAAGTAccctcttaattaattaaagattaagAGA
AagtttagtattttattttttaattttttttgtatcatCATTGgatttct
cttcttttatttttattagtattttttagattttaatttataaatttata
tttaaaaataaataaaagaccAAACCTGGACTGAGTTAGAAGTGGTATAG
ATACCCACCCAGCCCAGATCCAGACCAGACCTGACCTATGTTGTCTTAAT
AAAATCTGGCCCAgggtaataaataaattggttcCCAGTATTGATTTTCA
TTACCCAGTTATTTCCGAGTACGGGTTTGGGCATGACCCAAAAAAGCTAG
AACTTGAAACCGTGCCTACTGCctagttaaattatttaacttaaaaaaat
taaagataaaaaaatatagggaaAATGACACATAGATCCCCAACATTTGA
ATAAGGGACACAAAACCCcctaatgtttcaaaaaagacactcAGACCCTC
ATTTGTTaacagaaattataattttaaagtgtaATTACCATTATGCCCTT
atagcatattaaaaaataattgttcattGTCCAATTTAttcctatattat
taataaaattacgaatataacttcattatccaatttttccatttaatttt
tgtcaaattttctcttcaaactaaataaatttaatccattgctcaagaat
aaaaataaattaaattgattactaatataataaaaataacaattctcaat
aacaattctccatttaaacttatataatcaacaaaataaaaaaaatttgg
ttacaacaataattacaaaatcttaATTGTACTAAATAACATATCCAATA
GATTGACATATGgagaattgttatttttattatattaataatcaatttaa
tttatttttattcttgagcaatggattaaatttatttagtttagagagaa
aatttgacaaaaattaaatgaaaaaattgagtAATGAAGTTATattcgta
attttattaataatataggaaTAAATTGGACaatgaacaattatttttta
atatgctataagggtataatagtaattacactttaaaattataattcctG
TTAATAAATGGGGGTCTGAgtgtcttttttaaaatattaaaaaattttac
gtCCTTTATTCAAACATTGGGGTCTCTGTGTCCTTTTCCCAAAAATATAT
ACCTAACCCTTAACCTTTACCCATTTGCAAACACTAAGCCTAAACTCAAT
AGCGCACACACAACACAAGCTTGAAGCCGTTACCTCCGACTCTCGAAGTA
GCCACAATCCACTGACTTGCATCTCCATCACGCACCGCACGTTTGCACCT
CCAGCACGCATCACATGTCTGCTCTTCTTACCTCAAGCATGCATCGTACG
TGCCGCAATCCAAAGGTAAGATATTAGAGATAAATTGATCACCGAAATGA
GTTATCATGTATCTGCAACAATGTTTTTCTTACCTTACTTGTAACGAATG
ACATATGAAAATGTCTCGACGAATTTTACCCATCCAGCATGTCTCTTGTT
CAACTTGTGTTGGCCTTTAAGGTGTTTCAAGGACTCATGATCGGTATGAA
TCATGAACTCCTTAGGTTAGATATATTAAAACtcataatacaaaaaattc
ttaatagaTCATTTTTAATTGGACTTAATCCTATATGACATTAtgcaata
tataattattcacatataaacCTTACGTTGGATTAAGAATCCAATAATGT
TAGATTAAAAATCcaacatatatttctttgaCTGTTCAGCTTTACCCTTA
ACATTTTTTATGCTAAAATGACAAGCTCTTTGTTTCTCTTCGATTTAGTC
CTCAGTTGTTGATTCCATTAGGTTCATgctatttttcacttttgccACAT
CAAGAAttcttttgttatttactttaaaaggCCTTTTCAAGTTTCTTCAA
ATCTGGTGTAAGATTAGCTCGACGCTGAGAAGCATGTAAATACttgaaaa
tttgtttcttcttaTTCTCAATTCTTCAGTCTTTACTCAAATGCTACACT
CTGGTaatgtgtatatttatttatctatttatacGACATATGTGTATATT
TAGTCGGGTCTAAATAATACAACTTTCTCTGTAAAGAGATTAGACGAAAG
ATTGtctattaatttcttaaaacttatcatttatattattgactaaaata
tgatatttaggCTCATATGATTCGAGCTTGAACGAGATAATTACAAATGG
ttccattaatttaaaactaatcACAAGTGAAGACCTAGATTTCAGTTATT
TTCGTAAGAAAGGCATGCAGAAGTAATTAATCCAATTTGAAACCAAACGC
AGCGACCAATAAGTCTCAGCCACGTTAGATTCCGCAGGAAACAAACTGCA
CCCACACGCATCAGATCTCCCTTTAAACAAAACTCTTTTATCCAGCCGGC
CGCTGTCCCGCTGCCGCCATTTCTTATCCGGATGACCAACTTCCTCTTAC
AAGAAAGGGGAAACCATGAACTTCACTTTAGCCCGCTTTGTATTTCAGTT
TGCTGTCTCTTTAGATACTGCCAGTACCAGAAGCAACTGTAAATATCTTC
TTTTAACctctaaaaaaagaaaacttaccACAGCTGCCATCCCCTTCACT
CATACTGTGAGTTATTTACTTTTCTATGCGTGTAGTCGTGtactttatta
cttttaacGATATTAagtataagtttttattattttataatttttgctGA
TGGGTAGTCAAGTGAAGAGCTATTGGTGGTCGTTGGAGGAGGAGCAGCTG
GAGTTTATGGAGCTATTAGAGCTAAAACTGTGGCACCTAAGCTTAATGTT
GTCATTATAGAGAAAGGAAAGCCTCTTTCaaaggttttttctttttttct
ttttgtaattgcaCAAGGAATTTGACCCAGTTGGTGAATTGTTAGTGTTT
TGAATCTTCATTGTTGGTTGTTGGCAGGTTAAAATCTCTGGGGGAGGCAG
GTGCAATGTGACTAATGGGCATTGTGCTGATAAAATGGTGAGATTTGGTT
TTAACACTTGTAATTCAGTGCACAAGAAATAATgttcatgattattttta
actcaTTGAAAACTTGTATGCTAGAGCTAGAGAATTGTTTTTATCCCCGT
ATGTTGCACATTGCAATTGGCTATCCGAGGCTTGTTAATTCAGCAATTAA
GttagcattttgttttatatagtGAAGGCAAGGAAGGTAGGTCGTATTTG
AAgcccttaataaaaaatgttcCAATTGTGCGTCGAGTGTCTTTTGTTGT
ACAGCATTTTCAGATTTCGAAATGGTTAATTCCTTTGTAGATTTTGGCAG
GGCATTATCCTAGGGGTCACAAAGAATTCAGAGGATCTTTCTTCAGCTTG
CACGGGCCTATGGATACAATGTCCTGGTTTTCTGACCATGGAGTGGAACT
GAAGGTTGTCTTAAGAACTGTGTCTCTTTGGtatctttctttgttatttt
ttgtaatttattctttttttggcTCTAGACTGAGGATGATGGAAGGGTTT
TTCCTGTCAGTGACAGTTCTTCTTCAGTAATTGGTTGTCTTTTGACTGAA
GCAAAGCATAGGGGAGGTATGCTTGAGCACGCCGGCTTTGTTTTACATTC
ACTTTGTGATCTGTTCTTGATTATAACCTCCCTCAATATTATGGAATGTT
TGCAAGTTGTCTGTATTAGTTGCTCCATCAGTTGTTCTGCAGACTGGCAA
AGTTGTAACAACTGCATCATCTGATAATGCTGGCCGGAAGTTTCTTCTCA
AGGTTGAGAAACGTACGATGAATTTAGTTGAATGTATTGAAGCTGATTAT
CTATTGATTGCTAGTGGAAGTAGCCAGCAGGTTTGGCTGATATTGGTTCA
TTTCCATTATTAGGTGAGGTGAATCGAATTTCTTGATAAATCCTGTTGTT
TGTATCACAGGGCCATAGACTTGCAGCTCAACTTGGTCATTCAATTGTAG
ATCCAGTACCTAGCCTATTCACTTTTAAGATTGCAGATTCACAATTAACT
GAGCTATCGGGTGTAAGCTATTCGTCTCTTCTAATCTTGATGGAGACCCA
TGCCATACTTGTAGTTGCAAGATTTTGTGATCAATTTGGCTGTTCAGCGT
ATGTATATAAGTGGAAAACAAGTTGTGCATAGTTCTTTACCCTCAAGCTG
TGATTTGACATGATTATTGCAATGATCCATCAAGCCAGTTGAGTTTCTTG
CCGTACTCAGTTGTTAGGATGATTATGATATTAGCTTAAGGGTTGATAGC
TTGGAAAGCCCACAACTTCATAATATTCCATTGTGGTATTGCCTTTCCCC
AAAATACTTGAGGTGTAACGGTGtatttccttaaaaattcAGCATGTGCA
CAACAAGTTCAGTCAAGGTCTTTGTTGATTGTGTTGTATGTTCAACTCTT
TTtcaatcatcatttgttgatAACTTTATGCTACAGTAGATTATGTGCAT
TCGTGTCACATGATATGGTTACTCTTGACCTGTGCTGTGGACATCTTACT
ATATTGTTGCATGATATTAGCAGTATAATGGTCATGGTTCTAATATTTCT
ACTTGTTGAAAACCATCATTTATTTCCTTATTTATGATTAGGTTTCGTTT
CCCAAAGTCGTAGCAAAGCTTAAGTTAGAGAATGTACAAAGGAGTAGTCC
ATATCTTACCCAGGCAAGCTTGTGTTTTCATTTCAGTACTGATGCTTAAT
AATGTATGtgaattaaatcaaactttGTGCAACTTTAGGTTGGCCCCATG
TTAGTCACCCATTGGGGACTTAGTGGACCAGTAATTCTTCGGCTATCTGC
TTGGGGTGCCCGGTATCTATTCAGTTCATGTTATAAGGGTAAGGGCACCA
TTTTTTCTGTTTGAActatcaaaatatatcatttaaaatagagaataaaa
ctttcaaaagaataaataacaaaataaatcctTATTCCAACCTGCCGGTA
TTTGGATGCAGGGATGCTTACTGTTGATTTTGTACCTGATTTACATATAG
AAGATATGCAGTCCATTCTCAGTCAACACAAGATTCGATTTGCAGTAATT
TTTTCTGATTGTTCTTGTATACATTGGTGATAGTGCTAACTTGTTTCTTT
AACAAGGGTATTGGTGTTATGAGCTGAGAATTTTAGTAGTTCAAGAAAAA
GAACCAACTTTTCTTACAGGTTTCTAATGAAACAGTActattgttattat
caaattagGATAGTTTGTGACGTTTCAATCAATTTACAGTAACccagtta
aaattaatttgcttcTGACTTCACGGGCTCCACGACTACATTCTACTTTG
TTGCTTTTTGAGATAATTGCTTTCCTTCCATTCATTCCTTTACAGAAGCA
AAAAGTGCTCAATTCTTGTCCTCCGGAATTCTGCCTCGTGAAGAGATTCT
GGAAATATATATTGGGTCGTGAGGTATCATACATGTTTCAAGCTGAAAGA
TCACGCATTATTGTACATTAGTCTTCTTGTGGTTAAAATTTCCCCATCGA
TGTAATTTTCCTTGGTCATATACAGGGTTTAAGTGGAGATACATTGTGGG
CTTCCGTTTCAAATAACTCTTTAATTTCTATTGCTCGGCTTCTTAAGCAT
TGTACATTGGAAGTTGCTGGCAAGGTGAGGATACTGACGGAAAAACTGTT
TGTTctcagttttcaaaatttgtctTGATTTTCTCAAATGATAGACATTT
ATTTGTAATGAAGGGCCAATTCAAGGATGAATTTGTCACTGCTGGAGGTG
TTCCCTTGTCAGAGGTACTTTCTCTCTCCCACTCTCTCCCCATGTGTATG
CAAATGGAAATATAACTCCCTATGTCTTGCCTTTTTGTAGATCTCTCTGA
ACACAATGGAAAGCAAAATACATCCACGTTTGTTCTTTGCTGGAGAGGTA
AAATTCTTTTTGACTCTTTTAGTTTTCAATTGTTCAACAGAGCTAGAAGA
ACCTTGTCGTGCATCAATGGGGTTTCAGTATTTCACAGTTTTGGCTTCAA
TTTACAACCCAACAGCTTAAATAAGCAAATGACCGCATTCATTTGGGTGC
ATGAATCAGTTTAAGACCTGTTAATGCTTTAGTGGTGCTCAAAGGTTGAA
ATAATATGCAGGTACTAAATGTTGATGGGGTGACTGGTGGCTTTAATTTC
CAAGTAAGGAAGATATGCTTTAAGATATAAACACATTCTTTTTGAGATAT
AACATAACACACCTGTTGCTATTAATTCATCGTTTGTTTTTACACAGAAC
GCTTGGTCTGGTGGATACATTGCCGGAACAAGTATCGGCAAGCTATCAAA
TGATGCTACTCTCAAAAACAGAggcttttaa

Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:24202895..24209625+

>gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019292-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019292-mRNA1; organism=Citrus sinensis; type=CDS; length=1401bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:24202895..24209625+ (Citrus sinensis
ATGTCTGCTCTTCTTACCTCAAGCATGCATCGTACGTGCCGCAATCCAAA
GTTTGCTGTCTCTTTAGATACTGCCAGTACCAGAAGCAACTGTAAATATC
TTCTTTTAACctctaaaaaaagaaaacttaccACAGCTGCCATCCCCTTC
ACTCATACTTCAAGTGAAGAGCTATTGGTGGTCGTTGGAGGAGGAGCAGC
TGGAGTTTATGGAGCTATTAGAGCTAAAACTGTGGCACCTAAGCTTAATG
TTGTCATTATAGAGAAAGGAAAGCCTCTTTCaaagGTTAAAATCTCTGGG
GGAGGCAGGTGCAATGTGACTAATGGGCATTGTGCTGATAAAATGATTTT
GGCAGGGCATTATCCTAGGGGTCACAAAGAATTCAGAGGATCTTTCTTCA
GCTTGCACGGGCCTATGGATACAATGTCCTGGTTTTCTGACCATGGAGTG
GAACTGAAGACTGAGGATGATGGAAGGGTTTTTCCTGTCAGTGACAGTTC
TTCTTCAGTAATTGGTTGTCTTTTGACTGAAGCAAAGCATAGGGGAGTTG
CTCCATCAGTTGTTCTGCAGACTGGCAAAGTTGTAACAACTGCATCATCT
GATAATGCTGGCCGGAAGTTTCTTCTCAAGGTTGAGAAACGTACGATGAA
TTTAGTTGAATGTATTGAAGCTGATTATCTATTGATTGCTAGTGGAAGTA
GCCAGCAGGGCCATAGACTTGCAGCTCAACTTGGTCATTCAATTGTAGAT
CCAGTACCTAGCCTATTCACTTTTAAGATTGCAGATTCACAATTAACTGA
GCTATCGGGTGTTGGCCCCATGTTAGTCACCCATTGGGGACTTAGTGGAC
CAGTAATTCTTCGGCTATCTGCTTGGGGTGCCCGTAACccagttaaaatt
aatttgcttcTGACTTCACGGGCTCCACGACTACATTCTACTTTGTTGCT
TTTTGAGATAATTGCTTTCCTTCCATTCATTCCTTTACAGAAGCAAAAAG
TGCTCAATTCTTGTCCTCCGGAATTCTGCCTCGTGAAGAGATTCTGGAAA
TATATATTGGGTCGTGAGGGTTTAAGTGGAGATACATTGTGGGCTTCCGT
TTCAAATAACTCTTTAATTTCTATTGCTCGGCTTCTTAAGCATTGTACAT
TGGAAGTTGCTGGCAAGGGCCAATTCAAGGATGAATTTGTCACTGCTGGA
GGTGTTCCCTTGTCAGAGATCTCTCTGAACACAATGGAAAGCAAAATACA
TCCACGTTTGTTCTTTGCTGGAGAGGTACTAAATGTTGATGGGGTGACTG
GTGGCTTTAATTTCCAAAACGCTTGGTCTGGTGGATACATTGCCGGAACA
AGTATCGGCAAGCTATCAAATGATGCTACTCTCAAAAACAGAggctttta
a

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023166	HI0933-like_dom_sf
IPR004792	BaiN-like
IPR036188	FAD/NAD-bd_sf