gene-KPL71_019359-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 2.485e-34 Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 1 Query: 1 MAKSF-AIFILALFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 MAKS+ AIF+L L + MLQTM +A++G + + K YGPG++K QCP +CD RC +TQY K C+ FCNKCC+KCLCVPPGYYGNK VC CYNNWKT+EGGPKCP Sbjct: 1 MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVK-WSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 4.671e-26 Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 1 MAKSFAIFILA--LFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 MAK F+L LF L TM+ A Y + YGPG++KSYQC G+C RCS T+Y KPC+FFC KCC KCLCVPPG YGNK VCPCYNNWKT++GGPKCP Sbjct: 1 MAKLITSFLLLTILFTFVCL-TMSKEA------EYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana OX=3702 GN=GASA12 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 9.938e-20 Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 1 MAKSFAIFILA--LFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 M K +F+++ LFA + + Q + K+ G G++K +CP C+ RCS T +RKPCLFFCNKCC KCLCVP G YG+K CPCYNNW TKEGGPKCP Sbjct: 1 MMKLIVVFVISSLLFATQFSNGDELESQAQAPAIH--KNGGEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASAD_ARATH (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-19 Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 1 MAKSFAIFILALFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 MA +I + ++ + +L + + ++K P + +C +C RCS TQY+KPCLFFCNKCC KCLCVPPG YGNK VCPCYNNWKTK GGPKCP Sbjct: 1 MATKLSIIVFSIVVLHLLLSAHMHFLINVCAECETKSAIPPLL---ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.014e-17 Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1 Query: 115 GPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 G G +K QC KC RCS T ++KPC+FFC KCCKKCLCVPPG +GNK CPCYNNWKTKEG PKCP Sbjct: 30 GGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.569e-14 Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 121 GTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 G + C KC RCS+T Y+KPC+FFC KCC KCLCVP G YGNK CPCYNNWKTK GGPKCP Sbjct: 47 GRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.995e-14 Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 1 Query: 34 LFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 L ISM + +N G + ++ C +C RCS T ++KPC+FFC KCC CLCVP G YGNK CPCYNNWKT+EG PKCP Sbjct: 11 LLLISMFLILLTFSNVVEGYN---------KLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASA8_ARATH (Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=2 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 4.401e-7 Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 1 Query: 19 IFILALFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 + ++ F IS+L T + + DS C GKC+ RCS+ + CL +CN CC+KC CVP G +G+K CPCY + K +GG KCP Sbjct: 3 LVVVQFFIISLLLTSSFSVLSSA----DS-----------SCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 7.102e-7 Identity = 35/73 (47.95%), Postives = 41/73 (56.16%), Query Frame = 1 Query: 100 DSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 D G G VK C G+C RCS++ K CL CN CC +C CVPPG GN +CPCY + T G KCP Sbjct: 28 DGAKVGEGVVK-IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Match: PMLN_PRUPE (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 7.974e-7 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 Query: 142 CPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 318 C KC RCS+ Y++ CL +C CC+KC CVP G YGNK CPCY + K +G PKCP Sbjct: 5 CDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63 The following BLAST results are available for this feature:
BLAST of gene-KPL71_019359-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019359-mRNA1; organism=Citrus sinensis; type=mRNA; length=321bpback to top protein sequence of gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=106bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:24646223..24647026+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=804bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:24646223..24647026+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:24646223..24647026+ >gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_019359-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_019359-mRNA1; organism=Citrus sinensis; type=CDS; length=321bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:24646223..24647026+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|