hap1-g4111.t2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067DJK9|A0A067DJK9_CITSI (Ferroxidase OS=Citrus sinensis OX=2711 GN=CISIN_1g036786mg PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.912e-41 Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0 Query: 68 HLATEETVVPSRIINMPSGNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
H + +VPSRIINM GNSLRHP STLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE
Sbjct: 24 HRSCSRLLVPSRIINMLPGNSLRHPSSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 104
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5PHY1|A0A2H5PHY1_CITUN (ferroxidase OS=Citrus unshiu OX=55188 GN=CUMW_138210 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.604e-40 Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0 Query: 68 HLATEETVVPSRIINMPSGNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
H + +VPSRIINM GNSLRHP STLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE
Sbjct: 24 HRSCSRLLVPSRIINMLPGNSLRHPSSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 104
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|V4UEI0|V4UEI0_CITCL (ferroxidase OS=Citrus clementina OX=85681 GN=CICLE_v10016814mg PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.769e-40 Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0 Query: 68 HLATEETVVPSRIINMPSGNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
H + +VPSRIINM GNSLRHP STLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE
Sbjct: 24 HRSCSRLLVPSRIINMLPGNSLRHPSSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 104
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39SHJ2|A0AA39SHJ2_ACESA (ferroxidase OS=Acer saccharum OX=4024 GN=LWI29_010605 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.699e-19 Identity = 56/103 (54.37%), Postives = 65/103 (63.11%), Query Frame = 0 Query: 46 LCRRCLRIRSPSSATEGLEIYDHLATEETVVPSRIINMPSGNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
L RR R+ PS H + PSR I+ S N+ P S LI+A+RNFSS P LD+D Q P AIDY SLLQEDEFHR+ANSTIHDLQEKFE+
Sbjct: 6 LLRRMSRVLKPSLI--------HRRCSHLLEPSRHIDF-SENTRSSPRS-LISASRNFSSSPPNLDNDSQVPAAIDYSSLLQEDEFHRVANSTIHDLQEKFED 98
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7HEM4|A0A5C7HEM4_9ROSI (ferroxidase OS=Acer yangbiense OX=1000413 GN=EZV62_020545 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.910e-18 Identity = 54/103 (52.43%), Postives = 62/103 (60.19%), Query Frame = 0 Query: 46 LCRRCLRIRSPSSATEGLEIYDHLATEETVVPSRIINMPSGNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
L RR R+ PS H + PSR S N+ P S LI+A+RNF S P LD+D Q P AIDY SLLQEDEFHR+ANSTIHDLQEKFE+
Sbjct: 6 LLRRMSRVVKPSLI--------HWPCSHLLEPSRHTGF-SENTHSSPRS-LISASRNFRSSPPNLDNDSQVPAAIDYSSLLQEDEFHRVANSTIHDLQEKFED 98
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5B7AIN3|A0A5B7AIN3_DAVIN (ferroxidase OS=Davidia involucrata OX=16924 GN=Din_025615 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.057e-16 Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0 Query: 94 STLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
S L T +RNF SRPS L++D Q P IDYRSLLQE+EFH LA+STIHDLQEK EE
Sbjct: 50 SPLATPSRNFCSRPSNLNNDSQGPATIDYRSLLQENEFHMLADSTIHDLQEKLEE 104
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P5XGB1|A0A6P5XGB1_DURZI (ferroxidase OS=Durio zibethinus OX=66656 GN=LOC111283144 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.057e-15 Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0 Query: 97 ITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
A+R+F SRP + DFQ P IDYRS+LQEDEFHRLANSTIHDLQEK EE
Sbjct: 47 FAASRSFCSRPLNVPQDFQGPATIDYRSVLQEDEFHRLANSTIHDLQEKLEE 98
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P3ZZ86|A0A6P3ZZ86_ZIZJJ (ferroxidase OS=Ziziphus jujuba OX=326968 GN=LOC107416895 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.026e-15 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 Query: 98 TATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
A+R+F SRP LD + Q P AIDYRSLLQEDEFH+LA+STIHDLQEK EE
Sbjct: 59 VASRSFCSRPLNLDGESQGPAAIDYRSLLQEDEFHKLADSTIHDLQEKLEE 109
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A978VIQ3|A0A978VIQ3_ZIZJJ (ferroxidase OS=Ziziphus jujuba var. spinosa OX=714518 GN=FEM48_Zijuj04G0080000 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.156e-15 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 Query: 98 TATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
A+R+F SRP LD + Q P AIDYRSLLQEDEFH+LA+STIHDLQEK EE
Sbjct: 59 VASRSFCSRPLNLDGESQGPAAIDYRSLLQEDEFHKLADSTIHDLQEKLEE 109
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P3ZPI7|A0A6P3ZPI7_ZIZJJ (ferroxidase OS=Ziziphus jujuba OX=326968 GN=LOC107416958 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.156e-15 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 Query: 98 TATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
A+R+F SRP LD + Q P AIDYRSLLQEDEFH+LA+STIHDLQEK EE
Sbjct: 59 VASRSFCSRPLNLDGESQGPAAIDYRSLLQEDEFHKLADSTIHDLQEKLEE 109
BLAST of hap1-g4111.t2 vs. Araport11
Match: | (Symbols: FH, ATFH | frataxin homolog | chr4:1423685-1424758 REVERSE LENGTH=187) HSP 1 Score: 49.2914 bits (116), Expect = 1.407e-7 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 0 Query: 86 GNSLRHPFSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEE 148
G+ +RH T TR+FSS Q P ++DY S+LQE+EFH+LAN TI+ L EK E+
Sbjct: 49 GSRIRHDSLT----TRSFSS---------QGPASVDYSSVLQEEEFHKLANFTINHLLEKIED 98 The following BLAST results are available for this feature:
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of hap1-g4111.t2 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of hap1-g4111.t2 vs. Araport11
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap1-g4111.t2_Cgarrawayi-UQ_v1 ID=hap1-g4111.t2_Cgarrawayi-UQ_v1; Name=hap1-g4111.t2; organism=Citrus garrawayi; type=mRNA; length=504bpback to top protein sequence of hap1-g4111.t2_Cgarrawayi-UQ_v1 >hap1-g4111.t2_Cgarrawayi-UQ_v1 ID=hap1-g4111.t2_Cgarrawayi-UQ_v1; Name=hap1-g4111.t2_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=168bpback to top mRNA from alignment at hap1-C.garr_02:17117796..17120724+ Legend: start_codonCDSexonpolypeptideintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2929bp; location=Sequence derived from: hap1-C.garr_02:17117796..17120724+ (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap1-C.garr_02:17117796..17120724+ >hap1-g4111.t2_Cgarrawayi-UQ_v1 ID=hap1-g4111.t2_Cgarrawayi-UQ_v1; Name=hap1-g4111.t2; organism=Citrus garrawayi; type=CDS; length=504bp; location=Sequence derived from: hap1-C.garr_02:17117796..17120724+ (Citrus garrawayiback to top |