Transcript Overview
| Name | hap1-g6378.t2 |
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| Unique Name | hap1-g6378.t2_Cgarrawayi-UQ_v1 |
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| Type | mRNA |
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| Organism | Citrus garrawayi () |
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| Sequence length | 600 |
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Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| hap1-g6378.t2.stop1 | hap1-g6378.t2.stop1_Cgarrawayi-UQ_v1 | Citrus garrawayi | stop_codon |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| hap1-g6378.t2.exon1 | hap1-g6378.t2.exon1_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon2 | hap1-g6378.t2.exon2_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon3 | hap1-g6378.t2.exon3_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon4 | hap1-g6378.t2.exon4_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon5 | hap1-g6378.t2.exon5_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon6 | hap1-g6378.t2.exon6_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon7 | hap1-g6378.t2.exon7_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
| hap1-g6378.t2.exon8 | hap1-g6378.t2.exon8_Cgarrawayi-UQ_v1 | Citrus garrawayi | exon |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| hap1-g6378.t2.intron1 | hap1-g6378.t2.intron1_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron2 | hap1-g6378.t2.intron2_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron3 | hap1-g6378.t2.intron3_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron4 | hap1-g6378.t2.intron4_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron5 | hap1-g6378.t2.intron5_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron6 | hap1-g6378.t2.intron6_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
| hap1-g6378.t2.intron7 | hap1-g6378.t2.intron7_Cgarrawayi-UQ_v1 | Citrus garrawayi | intron |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| hap1-g6378.t2.start1 | hap1-g6378.t2.start1_Cgarrawayi-UQ_v1 | Citrus garrawayi | start_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| hap1-g6378.t2_Cgarrawayi-UQ_v1 | hap1-g6378.t2_Cgarrawayi-UQ_v1 | Citrus garrawayi | polypeptide |
| hap1-g6378.t2_Cgarrawayi-UQ_v1 | hap1-g6378.t2_Cgarrawayi-UQ_v1-protein | Citrus garrawayi | polypeptide |
Homology
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap1-g6378.t2_Cgarrawayi-UQ_v1 ID=hap1-g6378.t2_Cgarrawayi-UQ_v1; Name=hap1-g6378.t2; organism=Citrus garrawayi; type=mRNA; length=600bp
ATGCCTATACTCTTTGCTGTTTCCTCAGAAACCTGTTATTGTAGTCATTT
GTTTGCGCCGGCCTCTTTCAGCAATCGGCGAGGTTGCTGGGCTGTGATAC
GTAGATCGGATGGTTCTGATTCCATGTGCTGCCTCGATTTGGAATCGCCC
TTTGGATTAAGTCAGCGATGGATCGATCGTGATGCTGGCCGACCTAATCA
TGACGGTTCTGAAGCTGGATTGAATACGACCCATCTTCCGCAACGGCGTG
GCTTGTTGCGGAACACGTTTGCAGATGATAGTAAGATGGGGGAAAAAATC
TTTGTTACGCTAGCTACCATATCGTTCGAGATGCCTGCGCGCCAAGAAGG
GAAAGCAGAAGTAGCTGTGCCAGCGCTCTGGACAATCTTTGTGCAGCGAA
GAGTGCTAGGGAGGCTTGCTGTGGATGAGGGCTTGCTCAACTTGGAGAAG
AAATCAAACGCTGTTAACTATGCAACAGATATGTTAAGAGGCATTGGGTC
ATTATTATCTGTGGTGTCGATGGTTTCGGATTTTGCTGTATCTATCATCT
TTGCGGTGGAGATATTTGCAGCTTGGCCGGAGAACAATTCATGTGTGTGA back to topprotein sequence of hap1-g6378.t2_Cgarrawayi-UQ_v1 >hap1-g6378.t2_Cgarrawayi-UQ_v1 ID=hap1-g6378.t2_Cgarrawayi-UQ_v1; Name=hap1-g6378.t2_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=200bp
MPILFAVSSETCYCSHLFAPASFSNRRGCWAVIRRSDGSDSMCCLDLESP
FGLSQRWIDRDAGRPNHDGSEAGLNTTHLPQRRGLLRNTFADDSKMGEKI
FVTLATISFEMPARQEGKAEVAVPALWTIFVQRRVLGRLAVDEGLLNLEK
KSNAVNYATDMLRGIGSLLSVVSMVSDFAVSIIFAVEIFAAWPENNSCV* back to topmRNA from alignment at hap1-C.garr_03:2264590..2270265- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=5676bp; location=Sequence derived from: hap1-C.garr_03:2264590..2270265- (Citrus garrawayi
ATGCCTATACTCTTTGCTGTTTCCTCAGAAACCTGGTATTTCATCCTTGG
TATCTTCAAATCTGCCATCAACAAATGCACATAATGATTTGGTTATGGGG
AAAAGAAACCACAAATAAAATTTTTGATATGATTTTATTCCATGCAGTAT
GTATGAAGTTGATCCTAAGTCTTAACGCGTACAATTGAACGAACATTGGA
GCCGACCACCAAATATCTGTCATTAATCTTACTGCAATAGTTTTCTTTTC
CCGCTTCTCAAAGAGAACACTTATATAATTTGCATGAAAATAAACTGAGA
AAAAGAAAAATTGAAAATACTATCAGATCTTATTTTACTGGAAGTTGCAG
GGAAGAGGGTAAATGTAATGTTGGTGCAAAATGTTCAAGGCCTCGGAAAT
CTTTCAGTTATCAGATATCTACCGTTAGCTATGAAGACTTCATAAATGGC
TTGAATTGTTACAATTTCTATTTTTATTGGATATACACGTAGATATACAT
ACATATATGTACACACACGCACACACAATTGAATGTTATCATTTATGAGA
TTGAGAATCAGCTCCACAGATAAAACTAGGTTTGGCTATAAGAAAGAATC
GATTACTTCCAGGCAACCTCTTCACTAGATTCCTTGGTAGTTTGGTTTCT
TCATCTTGATAGTTCGAACCACCAGCACGAAGCATTCAAAATTAGGTAAT
TAATACCAGTTCTTTCGTCATTTGCATAAGTAATTAAGCTTTTACGGCAA
ACACGCATCAAGAAAATAAATTTTGTATGAGATTTGTCATGACCGTCTAA
ATCTTACATCAACCAACTTACAATGTTTAAGTTCAAAGAAAATATAACTT
TTAACAATAAATTACTCGTCGGCATATATGATTACTTTGTGCTATTGTAC
CATGGTGATTAATTTGTGCTAGAACCAAGATGTGATTAACATTATATGTT
AGGAAATATGTCTCCTTTACGAGGATTTTATTTAAAGGATAAGTAATTCA
CTGTATGTTTAATTCTTGAATTTCAAGAATAATGAAGAAGATCTTGAAAA
TTTTCAAAATCAAAACTTAAAAAAAAAAGTCTAAAAGATATTTTTTTTTA
CTTCCATTAAAACTATTACAAAAACAAACAAACAAGCAAACAATCAAGTA
AGAATAATATTTTTTTCAGATAATATATTTAGAATGGTAGTATATAAAAA
AGTTTAGATGATGAACTGATGGTCATATAATAAATGCATGTTTTGTATTT
CAAAAAACCAATTTTTTTTTTAAATGAACCAATGAATATAATAATTTTCT
TTATATAGAGGAGAGTAGGAAATTTTTTTATCTACTGATTTCTTGAGATT
ATAAGATTTTGAATAGAAATTTTAAAAAAATACTAATTACAAGACAAAAA
TTCTAAACTTAAATAATTAAGTTTTTAAGGAAATTAAAAAAGGTAAAGGT
TTTTTTTTTGGGAGGAGGGGGGAAGACTAGTAATAAATAAATTAATGATT
AGATAATATTAATAAGTGTATCCTTAGTATTAAGGTTACCAAATATAGAT
TTTCTTTAAAAATGATTCTTGGTTGCATTATAATTACTAATTAAAGAGAT
GTCTAATAGACTTCCCTACACAAACGTAAGTTAAAAAAACTTTATTAATT
AGAGTATTACTAAGAATACACTAAAAAAATGAGTTCTTTTCAAACTATGG
GATTTTAGACAATCACTTTGTTCGTTTGTATTTAAAGCCACCCCTTCCCA
TTATTTTATGAAATAACTTATTATAATTTCATTTACTCATTTTGATTTCA
CTTCACTTTATTTCATTTTTTCCCTCTAATTCTAAAAAAATAAATGACTC
ATAAGACTCATTCAAGATGCTGAGTGATATCTTGATATGATTTTGAAGCA
TGCTAACAAATTTGATCAAAGTTGTTGGTAACAACCAAAACTCCACTAAC
TCTATAATATCACATATGGACAAATCATAAAAATAAAAATAATGTTAGTG
ATCCAAACTTTAATCCCAATATTATATGTCACTATCTCATTGGATGACAA
ATTTCTTAATTTGTAAAATACTTAATCACTATCCAATGAATAAGTGTTAC
ATTAATTAAGATTCAAATTGAGATATCTTATATTGATCTAAAAATATAAT
AAAATAAAGCACAACAATTGTATAACAAGAAATTCATGTTATTATTGAGA
AATGCTCTTCACACCACTTTAATATCTTTATACCCCACTTTCGTATTCTG
TATTCATAATTCTATTGTTTTTGGAAATTTTATAAAAGGATAAATATGAA
TTTAATTAAACTAAAATATCTTTGTCCCGTAAATCATGGCCCTAACTATA
TTTTATATTAGTTAATTTTATTGATAAGATCAAAATAAGTTTGAATAATA
AAGAAATAAATTATCTAATAACACTAATTTTATTTATGAAAAATTATATT
TACATAATTTTCTATTGAATTCGATTTATTGTAATTTTATTTTCTTTTGC
CATTAAAATAAAATATATAAAATAAATGGCAGGGTTTCTGTGTTAAAAGC
TCTACTCACTATTGTTTGCCTAGAAGAAATCCTATTGCGAGACTTGAGTT
TCATATATACATGACCAAGTAGCGAAAGAGGAGAAGGCTACCGTTGATTT
TTATTTGCTCGATAATTTATTATTACTATTTTTTCAATAAGGAAACGAGC
CTAGCAAGAGAGGCTTTACCACCTGAGCGAACGCGGTCCCGTAGTTATCA
ATTGATTATTATCAATTTAAAAAAAAATAAATTGTGGGGGTGGTCTAAAT
GCTAATCAACTTTTTATTTTCTCTCCCTCGTCAAATTGTCAAAAATCTTG
AGCTGATAATGGATTAATTTTGATTAAAATTTAAAGACGTGGAGGCAAAG
AAAAGTCTCCCATATCGAGAACCTTCTCCCGACAATTAATAGCCGCCCAT
ACCTTATCAATTTCGCACAAATAACAACCACACGCATCAATAATATCGCT
CAAATCGAACCGTCCATCTCATATCTCGTCAAACAATAATAGCCGTGAGA
TCACTAGGGTTCTATTTTAAGTCGGTACACATCTCTTTATAATTGATGAC
AACACCTCTACCAGTTATTGTAGTCATTTGTTTGCGCCGGCCTCTTTCAG
CAGTTTGTTTTCTTAGATCTATTCGTCTCTAAGTTCTCTCGCTTTTGTTT
ATTCAATTTCGAATAGATAGTCTTGGCTCATCATGGCTCTTGGCCTATTC
TCTCAAAGCTTTGATCTGGATCTTCGTATTTTCGTCAGATCGGCGAGGTT
GCTGGGCTGTGATACGTAGATCGGATGGTTCTGATTCCATGTATGGTATA
TATTTTCAGATTCGTTGTTAGATCTCAACGCCTTTTTCTGATTTTCCGAT
TTCAAACGTTCATAGATCTGATTTTTTTATTTTAATCTTTTATTTTTAAA
TTTTGAAATCGTTTGGTGATTGGTTTCTGAAGATGTTTGATTTGCTTTAG
GTGCTGCCTCGATTTGGAATCGCCCTTTGGATTAAGTCAGCGATGGATCG
ATCGTGATGCTGGCCGACCTAATCATGACGGTTCTGAAGCTGGATTGAAT
ACGACCCATCTTCCGCAACGGCGTGGCTTGTTGCGGAACACGTTTGCAGA
TGATAGTAAGATGGGGGAAAAAATCTTTGTTACGCTAGCTACCATATCGT
GTAAGCTTAGTCTTTGCTTTTATTACCTGTTAGCTGTTATAATATTATGG
TGTGTGTGGAGGTGAAGCAGAAAAAAAATTTGTGACTGGCGAGGAAAATA
TGTGATTGGAAGTTGAGAGAGATTTTTCGTGTTGTGGTTGTTATTACGGC
CTTTGCCATGACAGGTGCGCTTGCATGGCAGGTCAAAAAAACTTAATAAA
AGTATTTATTTTTTTGTTCTCGGGGGGAGATGGCACGGGGGTTATTCTTT
TATTATTTTTTATTACCCCGGCTCTCCCCCCTGCTGCTGTCTGGTGTTTT
TTGGCCTTTCTTTTTTTTTCTGGTCTTCCTTTTTTTCCCCTACGTTTACT
TTAGCCGTTTTCATACGTTACCAAATCTTCAACAATTCACAGTCGAGATG
CCTGCGCGCCAAGAAGGGAAAGCAGAAGGTACAATCTATTGAAACACATC
AATTTTATATACATGATGAACTTATCAGATAATGATGCTTATATGTTACA
CATAGTCACAAACTTATCAGATAATGATGCTTATATGTTACACATAGTAC
TTGACTATGTTTTGGCGCACATATTATAGCTCATCATAACAACTTATATA
GCAATGGAAGCTCATCATAATGATGCTTTTCACATTGATGAAACTTGGCA
CATAATAATACTTAAATGTTACACACAGAACTTGACTATGTTTTGGCACA
CATATTTTAGCTCATAACAACTTATATAGCACTGGTAGCTCGTAACTTAA
CCATAATAATTAATATTCGGTATGTAATTAATGTTTTATTTAACTGTTCA
TAATTGCACTAGTAACTCGTAATAACTTACTGGATACTACTATCTATATA
ATTCTCACATTGATGTTGTGCATACTACAAACATAATCATTAATATTTGG
TATTTAATTAATGTTCACCTAATTGTTTATAATTTATTTCTATTTTTATG
TTTCTTTTCTATAACTAAATATCTTGAGGACTATAATATATATTTTATAT
AAGAAAACAATCAAGTTTTATGCATCTGTCAGCTTTGACTGCATTTTATT
CCAACTGTAAGCTAAAAAAGCATTGACATATAATTGAAACAGCACTGACA
TGCAATCTCATTTGCTTGCTTATATTTCCATCAAATTATAATCCTGTGTG
ATCAACGTAAGTGATCAAATAATCATTCATCTTCTCATAGAATGTAACAA
TAAATATATAATACAAGTTTGATGTTGTTGATATGGTGGATGGTGTAGCT
GGGATTTAGATTTGAAGTCCAGATCTTATTATGTAAATCTGGGCACTGGT
TCTCTTATTTTATTGATATAAGCATATAATTACTGTTGTTTTGTTATTGA
GAAGCCGTTGCTGGGTTTGATCTTTCTGTACTGAATTGGTGGGGTTGGCT
TGTATATTTAGTATTTGAGCCCTTGGTTCTATCAAGTGTAGTAGCTGTGC
CAGCGCTCTGGACAATCTTTGTGCAGCGAAGAGTGCTGTAAAGAACCGTG
GCAATTTTAACTGTATAAATATGATCCTTGGTTACTGCTGAGATGGAGAT
AAGAAGTTTTGTACAGGCTGGCACAGAAGTGCTGACAGGGGGCTTTGTAC
GTGAGAGGGAGGCTTGCTGTGGATGAGGGCTTGCTCAACTTGGAGAAGAA
ATCAAACGCTGTTAACTATGCAACAGATATGTTAAGAGGTGAAAAATCTG
AGCAGGGTAGAAGTTTTTTTTTTTTTTTTGTGAGAGGATAAGGATATGTA
TGTTAGGAGGTGACAATCTGAATGGGGTAGAAGTTTTTTTTTAAGAGGTG
ACAATCTGAATGGGGTAGAAGTTTTTTTTTTTCAGAGTAGTTTATATTTT
GTATTTTAATGTGCAGGCATTGGGTCATTATTATCTGTGGTGTCGATGGT
TTCGGATTTTGCTGTATCTATCATCTTTGCGGTGGAGATATTTGCAGCTT
GGCCGGAGAACAATTCATGTGTGTGA back to topCoding sequence (CDS) from alignment at hap1-C.garr_03:2264590..2270265- >hap1-g6378.t2_Cgarrawayi-UQ_v1 ID=hap1-g6378.t2_Cgarrawayi-UQ_v1; Name=hap1-g6378.t2; organism=Citrus garrawayi; type=CDS; length=600bp; location=Sequence derived from: hap1-C.garr_03:2264590..2270265- (Citrus garrawayi
ATGCCTATACTCTTTGCTGTTTCCTCAGAAACCTGTTATTGTAGTCATTT
GTTTGCGCCGGCCTCTTTCAGCAATCGGCGAGGTTGCTGGGCTGTGATAC
GTAGATCGGATGGTTCTGATTCCATGTGCTGCCTCGATTTGGAATCGCCC
TTTGGATTAAGTCAGCGATGGATCGATCGTGATGCTGGCCGACCTAATCA
TGACGGTTCTGAAGCTGGATTGAATACGACCCATCTTCCGCAACGGCGTG
GCTTGTTGCGGAACACGTTTGCAGATGATAGTAAGATGGGGGAAAAAATC
TTTGTTACGCTAGCTACCATATCGTTCGAGATGCCTGCGCGCCAAGAAGG
GAAAGCAGAAGTAGCTGTGCCAGCGCTCTGGACAATCTTTGTGCAGCGAA
GAGTGCTAGGGAGGCTTGCTGTGGATGAGGGCTTGCTCAACTTGGAGAAG
AAATCAAACGCTGTTAACTATGCAACAGATATGTTAAGAGGCATTGGGTC
ATTATTATCTGTGGTGTCGATGGTTTCGGATTTTGCTGTATCTATCATCT
TTGCGGTGGAGATATTTGCAGCTTGGCCGGAGAACAATTCATGTGTGTGA back to top
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