hap2-g2371.t3
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|V4RWH0|V4RWH0_CITCL (BHLH domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10025735mg PE=4 SV=1) HSP 1 Score: 392.889 bits (1008), Expect = 9.654e-135 Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNGMSLHPMCLPGILPPIQLPHMRMGFG+GNGSL+MNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQ GTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMI RD AEGVHLKAIDHNLVLSPHLKGMQTG+SVCSDDMKPERKDF Sbjct: 217 MRNGMSLHPMCLPGILPPIQLPHMRMGFGVGNGSLHMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQHGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMIGRDRAEGVHLKAIDHNLVLSPHLKGMQTGKSVCSDDMKPERKDF 409
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5PJ36|A0A2H5PJ36_CITUN (BHLH domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_141210 PE=4 SV=1) HSP 1 Score: 347.436 bits (890), Expect = 4.046e-117 Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKG 174 MRNGMSLHPMCLPGILPPIQLPHMRMGFG+GNGSL+MNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSN+ NSETEFGLDASIQANFGPFQ GTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMI RD AEGVHLKAIDHNLVLSPHLKG Sbjct: 218 MRNGMSLHPMCLPGILPPIQLPHMRMGFGVGNGSLHMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNVTNSETEFGLDASIQANFGPFQHGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDRSSLEACMIGRDRAEGVHLKAIDHNLVLSPHLKG 391
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067GHM3|A0A067GHM3_CITSI (BHLH domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g036669mg PE=4 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 5.081e-63 Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASG 101 MRNGMSLHPMCLPGILPPIQLPHMRMGFG+GNGSL+MNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQ GTASG Sbjct: 217 MRNGMSLHPMCLPGILPPIQLPHMRMGFGVGNGSLHMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQHGTASG 317
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A438KJ69|A0A438KJ69_VITVI (Transcription factor SPATULA OS=Vitis vinifera OX=29760 GN=SPT_2 PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 7.678e-60 Identity = 106/196 (54.08%), Postives = 141/196 (71.94%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTL-VSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNP--SAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNG+SLHPMCLPG+LPP+QL MR+G G NGSL+M+ TGTL V+QET + L NQ SS+ +P+ ++I+NSET FGL++SIQA+ GPFQ T+S + RED+LPHQ LN+ + TN S P +++Q S +KD ++LE+C+ RRD +EG+ LK I+HN V P L GM TGRSV +DDMK +R DF Sbjct: 79 MRNGLSLHPMCLPGVLPPVQLSQMRIGIGEENGSLHMDMTGTLPVNQETME---YRLANQGTSSSHPSVPNLTDIMNSETSFGLESSIQAHLGPFQLQTSSADICREDVLPHQQLNISCAGTNSLVSLP----YDAQASGVKDSNTLESCIQRRDLSEGMLLKNIEHNQVPFPQLNGMHTGRSVPNDDMKTDRLDF 267
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A438F5W1|A0A438F5W1_VITVI (Transcription factor SPATULA OS=Vitis vinifera OX=29760 GN=SPT_4 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 7.964e-60 Identity = 106/196 (54.08%), Postives = 141/196 (71.94%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTL-VSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNP--SAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNG+SLHPMCLPG+LPP+QL MR+G G NGSL+M+ TGTL V+QET + L NQ SS+ +P+ ++I+NSET FGL++SIQA+ GPFQ T+S + RED+LPHQ LN+ + TN S P +++Q S +KD ++LE+C+ RRD +EG+ LK I+HN V P L GM TGRSV +DDMK +R DF Sbjct: 89 MRNGLSLHPMCLPGVLPPVQLSQMRIGIGEENGSLHMDMTGTLPVNQETME---YRLANQGTSSSHPSVPNLTDIMNSETSFGLESSIQAHLGPFQLQTSSADICREDVLPHQQLNISCAGTNSLVSLP----YDAQASGVKDSNTLESCIQRRDLSEGMLLKNIEHNQVPFPQLNGMHTGRSVPNDDMKTDRLDF 277
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|D7SVW1|D7SVW1_VITVI (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g00450 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 3.105e-59 Identity = 105/201 (52.24%), Postives = 141/201 (70.15%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTL-VSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHT-------FNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNG+SLHPMCLPG+LPP+QL MR+G G NGSL+M+ TGTL V+QET + L NQ SS+ +P+ ++I+NSET FGL++SIQA+ GPFQ T+S + RED+LPHQ LN+ + TN + T +++Q S +KD ++LE+C+ RRD +EG+ LK I+HN V P L GM TGRSV +DDMK +R DF Sbjct: 197 MRNGLSLHPMCLPGVLPPVQLSQMRIGIGEENGSLHMDMTGTLPVNQETME---YRLANQGTSSSHPSVPNLTDIMNSETSFGLESSIQAHLGPFQLQTSSADICREDVLPHQQLNISCAGTNSLELKMETTITVSLPYDAQASGVKDSNTLESCIQRRDLSEGMLLKNIEHNQVPFPQLNGMHTGRSVPNDDMKTDRLDF 394
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A978UYY2|A0A978UYY2_ZIZJJ (BHLH domain-containing protein OS=Ziziphus jujuba var. spinosa OX=714518 GN=FEM48_Zijuj08G0118800 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 9.482e-54 Identity = 100/195 (51.28%), Postives = 130/195 (66.67%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTL-VSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNP-SAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNG+SLHPMC+PG LPPIQL RM FG GN SL++N +GTL + QETST N+F L NQ + NQ +P+ S+II SE+ FG++ SIQA+ GPFQ T++ E ++ + HQ V H TNP A FN+Q S++K + LE C+ RD EG LKA++ NLV S HL +QTGR V +DD+K ER D Sbjct: 278 MRNGLSLHPMCVPGALPPIQLSQTRMDFGEGNRSLHLNMSGTLPMDQETSTQNLFGLSNQCSAPNQTFVPNMSSIIGSESSFGIEPSIQAHLGPFQLHTSAEEICKDVAMQHQQTIVNHLETNPLGGTATVAFNAQTSNIKGSNYLETCITERDRLEGGLLKAMEQNLVRSSHLTSLQTGRCVPNDDIKMERTDL 472
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P5ZEQ2|A0A6P5ZEQ2_DURZI (Transcription factor SPATULA-like OS=Durio zibethinus OX=66656 GN=LOC111299973 PE=4 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.506e-51 Identity = 99/196 (50.51%), Postives = 130/196 (66.33%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTL-VSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPA--VHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTGRSVCSDDMKPERKDF 193 MRNG+SLHPMCLPG+L PIQ RM FG NGSL+MN +GTL QETS VFNLPNQ SSN +P SNI+ SET FGL+ SIQA F PFQ ++S + RED+LPH L + S +A + + F+++ SD+K+ S EA M+RRD + V LK ++H+L++ L G Q GRS SD++K E+ +F Sbjct: 199 MRNGLSLHPMCLPGVLQPIQFSQTRMDFGEENGSLHMNLSGTLPADQETSAQMVFNLPNQCSSSNPATVPDMSNIVTSETPFGLE-SIQAQFEPFQLLSSSQDICREDILPHHQLKINTSEFGSAATSAVLLPFDTRESDIKESGSHEASMMRRDQSSSVILKNMEHDLIIPQPLTGRQAGRSDSSDEIKTEKPNF 393
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A251NAX2|A0A251NAX2_PRUPE (BHLH domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G131400 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 5.253e-51 Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTLV-SQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNP-------SAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTG-RSVCSDDMKPERK 191 MRNGMSLHPMCLPG L P+Q+ MRM G N L+++ TGTL+ +QE+ T N+F+ NQ +NQ +P SN++NSET FGL++S++A+ GPFQ +S E REDML HQ +NV HS TNP +A +FN+Q SDLK SSL AC+ R+ EG+ LKA+ N H+ M+TG R V +D++K ER+ Sbjct: 194 MRNGMSLHPMCLPGALQPVQVSQMRMDLGEENRPLHLDMTGTLLMNQESPTQNLFHFSNQCTDANQSYVPDMSNVVNSETSFGLESSMRAHLGPFQLPNSSEEICREDMLQHQQINVNHSETNPLEFELGATARVSLSFNTQVSDLKGSSSLGACITGRNRQEGLLLKAMKQNF----HIDSMRTGRRRVANDNIKTERR 389
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A251NAV2|A0A251NAV2_PRUPE (BHLH domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G131400 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 6.435e-51 Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPGILPPIQLPHMRMGFGMGNGSLYMNSTGTLV-SQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNP-------SAPAVHTFNSQGSDLKDRSSLEACMIRRDHAEGVHLKAIDHNLVLSPHLKGMQTG-RSVCSDDMKPERK 191 MRNGMSLHPMCLPG L P+Q+ MRM G N L+++ TGTL+ +QE+ T N+F+ NQ +NQ +P SN++NSET FGL++S++A+ GPFQ +S E REDML HQ +NV HS TNP +A +FN+Q SDLK SSL AC+ R+ EG+ LKA+ N H+ M+TG R V +D++K ER+ Sbjct: 216 MRNGMSLHPMCLPGALQPVQVSQMRMDLGEENRPLHLDMTGTLLMNQESPTQNLFHFSNQCTDANQSYVPDMSNVVNSETSFGLESSMRAHLGPFQLPNSSEEICREDMLQHQQINVNHSETNPLEFELGATARVSLSFNTQVSDLKGSSSLGACITGRNRQEGLLLKAMKQNF----HIDSMRTGRRRVANDNIKTERR 411
BLAST of hap2-g2371.t3 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FUA4|SPT_ARATH (Transcription factor SPATULA OS=Arabidopsis thaliana OX=3702 GN=SPT PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.437e-10 Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPG-ILPPIQLPHMRMGFGMGNGSLYMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDR 141 MRNG++LHP+CLPG L P+QL +R E + + N NQ S++ P N + S + L+ SI+++FGPF T+ E SRE L H LN+GHS N + F+ Q DLKDR Sbjct: 255 MRNGINLHPLCLPGTTLHPLQLSQIR-------------------PPEATNDPLLNHTNQFASTS--NAPEMINTVAS--SYALEPSIRSHFGPFPLLTSPVEMSREGGLTHPRLNIGHSNANITGEQA-LFDGQ-PDLKDR 371
BLAST of hap2-g2371.t3 vs. Araport11
Match: | (Symbols: SPT | SPATULA | chr4:17414167-17415945 FORWARD LENGTH=373) HSP 1 Score: 62.7734 bits (151), Expect = 1.455e-11 Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 0 Query: 1 MRNGMSLHPMCLPG-ILPPIQLPHMRMGFGMGNGSLYMNSTGTLVSQETSTLNVFNLPNQHISSNQLQLPSTSNIINSETEFGLDASIQANFGPFQRGTASGETSREDMLPHQHLNVGHSVTNPSAPAVHTFNSQGSDLKDR 141 MRNG++LHP+CLPG L P+QL +R E + + N NQ S++ P N + S + L+ SI+++FGPF T+ E SRE L H LN+GHS N + F+ Q DLKDR Sbjct: 255 MRNGINLHPLCLPGTTLHPLQLSQIR-------------------PPEATNDPLLNHTNQFASTS--NAPEMINTVAS--SYALEPSIRSHFGPFPLLTSPVEMSREGGLTHPRLNIGHSNANITGEQA-LFDGQ-PDLKDR 371 The following BLAST results are available for this feature:
BLAST of hap2-g2371.t3 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of hap2-g2371.t3 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of hap2-g2371.t3 vs. Araport11
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap2-g2371.t3_Cgarrawayi-UQ_v1 ID=hap2-g2371.t3_Cgarrawayi-UQ_v1; Name=hap2-g2371.t3; organism=Citrus garrawayi; type=mRNA; length=582bpback to top protein sequence of hap2-g2371.t3_Cgarrawayi-UQ_v1 >hap2-g2371.t3_Cgarrawayi-UQ_v1 ID=hap2-g2371.t3_Cgarrawayi-UQ_v1; Name=hap2-g2371.t3_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=194bpback to top mRNA from alignment at hap2-C.garr_01:25879054..25880003+ Legend: start_codonCDSexonpolypeptideintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=950bp; location=Sequence derived from: hap2-C.garr_01:25879054..25880003+ (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap2-C.garr_01:25879054..25880003+ >hap2-g2371.t3_Cgarrawayi-UQ_v1 ID=hap2-g2371.t3_Cgarrawayi-UQ_v1; Name=hap2-g2371.t3; organism=Citrus garrawayi; type=CDS; length=582bp; location=Sequence derived from: hap2-C.garr_01:25879054..25880003+ (Citrus garrawayiback to top |