hap2-g4623.t2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067EBC2|A0A067EBC2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042922mg PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.730e-32 Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0 Query: 56 ANPEKIARAQNEKSTASKKFTQASVGKL-----------RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
AN EKIA+A+NEKSTASKK TQ S GK RLHWTAEEEEM KEGV+KFSTK+ KNL WKKVLEFG VF PT TPSDLKDK RNI +++SSAISR+
Sbjct: 347 ANSEKIAQARNEKSTASKKSTQVSGGKFTNFTFASEKRRRLHWTAEEEEMLKEGVEKFSTKVNKNLPWKKVLEFGCDVFDPTRTPSDLKDKWRNIMSRESSAISRK 452
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5P710|A0A2H5P710_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_107720 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 7.383e-32 Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0 Query: 56 ANPEKIARAQNEKSTASKKFTQASVGKL-----------RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
AN EKIA+A+NEKSTASKK TQ S GK RLHWTAEEEEM KEGV+KFSTK+ KNL WKKVLEFG VF PT TPSDLKDK RNI +++SSAISR+
Sbjct: 450 ANSEKIAQARNEKSTASKKSTQVSGGKFTNFTFASEKRRRLHWTAEEEEMLKEGVEKFSTKVNKNLPWKKVLEFGCDVFDPTRTPSDLKDKWRNIMSRESSAISRK 555
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067DN36|A0A067DN36_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038943mg PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.967e-21 Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0 Query: 94 MRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
+R EGV+ FSTK+IKNL WKKVLEFG VFYPTCTPSDLKDKRRN TAKKS AISRR
Sbjct: 157 LRCEGVENFSTKVIKNLPWKKVLEFGCHVFYPTCTPSDLKDKRRNNTAKKSLAISRR 213
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QE01|A0A2H5QE01_CITUN (Myb-like domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_221210 PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 9.649e-19 Identity = 64/100 (64.00%), Postives = 70/100 (70.00%), Query Frame = 0 Query: 56 ANPEKIARAQNEKSTASK-----KFTQASVGKLRLHWTAEEEE-MRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISR 148
A EKIA+A+NEKSTASK FT AS + LHWTAEEEE M KEGV+KFSTK+ KNL FG VFYP TPSDLKDK R I AK+SSAISR
Sbjct: 23 AQLEKIAQARNEKSTASKSLHNKNFTFASEKRRSLHWTAEEEEEMLKEGVEKFSTKVNKNL-------FGCHVFYPPRTPSDLKDKWRKIMAKESSAISR 115
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|B9R8C5|B9R8C5_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1598630 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.157e-18 Identity = 57/102 (55.88%), Postives = 64/102 (62.75%), Query Frame = 0 Query: 62 ARAQNEKSTASKKF--TQASVGKL-----------RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
AR QNEK KK TQA KL RLHW EEEEM +EGV KFST + KNL WKK+LEFG VF + TP+DLKDK RNI AK SSA++ R
Sbjct: 318 ARNQNEKVIPLKKSRQTQAPAKKLTNLSFPHEKRKRLHWKPEEEEMLREGVQKFSTTVNKNLPWKKILEFGHHVFDGSRTPADLKDKWRNIVAKDSSAVNGR 419
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2I4FNS8|A0A2I4FNS8_JUGRE (Uncharacterized protein LOC109000767 OS=Juglans regia OX=51240 GN=LOC109000767 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.523e-18 Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0 Query: 59 EKIARAQNEKSTASKKFTQA-------------SVGKLRLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR-VFYPTCTPSDLKDKRRNITAKKSSAISR 148
+ +A ++N+K TAS K QA +V + RL WTAEEE+M KEGV KFST KN+ W+K+LEFGR +F+ T TP DLKDK +N+TAK SS I++
Sbjct: 372 DDVATSKNKKVTASNKSRQARESPKKFTKMTFPNVKRKRLFWTAEEEDMLKEGVHKFSTSANKNIPWRKILEFGRHIFHTTRTPVDLKDKWKNMTAKDSSTINK 475
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T1RAJ3|A0A8T1RAJ3_CARIL (Myb-like domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_03G284600 PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.156e-18 Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 59 EKIARAQNEKSTASKKFTQA-------------SVGKLRLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR-VFYPTCTPSDLKDKRRNITAKKSSAISR 148
E +A ++N+K TAS K Q +V + RL WTAEEE+M KEGV KFST KN+ W+K+LEFGR +F+ T TP DLKDK +N+T K+SS I++
Sbjct: 239 EDVATSKNKKVTASNKSRQPRESPKKFMKMTFPNVKRKRLFWTAEEEDMLKEGVQKFSTSANKNIPWRKILEFGRHIFHTTRTPVDLKDKWKNMTTKESSTINK 342
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7HGV8|A0A5C7HGV8_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020858 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.767e-18 Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 0 Query: 56 ANPEKIARAQNEKSTA--SKKFTQASVGKLRLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
ANP KI + ++++ S A+ + R HWT EEEEM +E V KFS+ + KNL W+K+LEFG VF PT P+DLKDK RN+ AK+SS++SRR
Sbjct: 319 ANPVKINKTTKKQASPRNSPNLPFANEKRKRQHWTTEEEEMLREAVHKFSSTVNKNLPWRKILEFGHHVFDPTRNPTDLKDKWRNMMAKESSSVSRR 415
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A922FL46|A0A922FL46_CARIL (Myb-like domain-containing protein OS=Carya illinoinensis OX=32201 GN=I3842_03G273400 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.676e-17 Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 59 EKIARAQNEKSTASKKFTQA-------------SVGKLRLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR-VFYPTCTPSDLKDKRRNITAKKSSAISR 148
E +A ++N+K TAS K Q +V + RL WTAEEE+M KEGV KFST KN+ W+K+LEFGR +F+ T TP DLKDK +N+T K+SS I++
Sbjct: 375 EDVATSKNKKVTASNKSRQPRESPKKFMKMTFPNVKRKRLFWTAEEEDMLKEGVHKFSTSANKNIPWRKILEFGRHIFHTTRTPVDLKDKWKNMTTKESSTINK 478
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6A1V7T2|A0A6A1V7T2_9ROSI (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G005850 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.922e-17 Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 0 Query: 4 ETPVAGPESLNSLHRVEFRQVSHFVYSITNKNSGSGRSGDFMDVDLLEEEPCANPEKIARAQNEKSTASKKFTQA-------------SVGKLRLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNITAKKSSAISRR 149
ET + PE L++ R ++ +S K GS R D E+ EK+A N ++ A+KK Q + + RL+WTAEEE M KEGV FST KN+ W+K+LE G +F+ T TP DLKDK +N+ AK+S +I RR
Sbjct: 295 ETNDSDPEKLSARTRRFKQKAQKRAWS---KKLGSARKSSSQKTDTPEKNARKPNEKVAATNNRQAIAAKKLRQPRESPKQFTKMTYPNAKRKRLNWTAEEENMLKEGVHTFSTSANKNIPWRKILELGSHIFHVTRTPIDLKDKWKNMMAKESKSIKRR 451
BLAST of hap2-g4623.t2 vs. Araport11
Match: | (Symbols: TRFL10 | TRF-like 10 | chr5:999266-1000947 REVERSE LENGTH=420) HSP 1 Score: 67.0106 bits (162), Expect = 2.674e-13 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 0 Query: 31 ITNKNSGSGRSGDFMDVDLLEEEPCANPEKIARAQNEKSTA-----SKKFTQASVGKL----RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFG-RVFYPTCTPSDLKDKRRNI 138
I++K S + R+G+ + + +P R +N+++T SK S K+ RL WT EEEEM K GV+KF+ + KN+ W+K+LE G +VF+ T TP+DLKDK R++
Sbjct: 287 ISSKGSSNERNGEDVTEQVTSSVQVTSPS--GRMRNQQATTKVVAKSKTVRDISFFKMDQRRRLLWTYEEEEMLKVGVEKFAAEANKNMPWRKILEMGEKVFHETRTPADLKDKWRSM 402
BLAST of hap2-g4623.t2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:70828-71998 REVERSE LENGTH=292) HSP 1 Score: 64.3142 bits (155), Expect = 1.382e-12 Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0 Query: 84 RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR-VFYPTCTPSDLKDKRRNIT 139
R+ WT EE+M +EGV+KFS I KN+ WKK+LE G+ +F+ T SDLKDK RN+
Sbjct: 234 RVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMV 290
BLAST of hap2-g4623.t2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:70115-71998 REVERSE LENGTH=345) HSP 1 Score: 64.3142 bits (155), Expect = 1.701e-12 Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0 Query: 84 RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR-VFYPTCTPSDLKDKRRNIT 139
R+ WT EE+M +EGV+KFS I KN+ WKK+LE G+ +F+ T SDLKDK RN+
Sbjct: 234 RVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMN 290
BLAST of hap2-g4623.t2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:70115-71998 REVERSE LENGTH=309) HSP 1 Score: 50.447 bits (119), Expect = 1.228e-7 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0 Query: 84 RLHWTAEEEEMRKEGVDKFSTKIIKNLSWKKVLEFGR 120
R+ WT EE+M +EGV+KFS I KN+ WKK+LE G+
Sbjct: 234 RVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGK 270 The following BLAST results are available for this feature:
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of hap2-g4623.t2 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of hap2-g4623.t2 vs. Araport11
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus garrawayi UQ v1.0 proteins
Date Performed: 2024-10-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap2-g4623.t2_Cgarrawayi-UQ_v1 ID=hap2-g4623.t2_Cgarrawayi-UQ_v1; Name=hap2-g4623.t2; organism=Citrus garrawayi; type=mRNA; length=498bpback to top protein sequence of hap2-g4623.t2_Cgarrawayi-UQ_v1 >hap2-g4623.t2_Cgarrawayi-UQ_v1 ID=hap2-g4623.t2_Cgarrawayi-UQ_v1; Name=hap2-g4623.t2_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=166bpback to top mRNA from alignment at hap2-C.garr_02:20484972..20486766- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1795bp; location=Sequence derived from: hap2-C.garr_02:20484972..20486766- (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap2-C.garr_02:20484972..20486766- >hap2-g4623.t2_Cgarrawayi-UQ_v1 ID=hap2-g4623.t2_Cgarrawayi-UQ_v1; Name=hap2-g4623.t2; organism=Citrus garrawayi; type=CDS; length=498bp; location=Sequence derived from: hap2-C.garr_02:20484972..20486766- (Citrus garrawayiback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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