hap2-g6208.t2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067HBT4|A0A067HBT4_CITSI (Protein kinase domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g005923mg PE=4 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 2.331e-115 Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0 Query: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQL CY+PRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNH ETYL+VANNTYQGLTTCQAMMSQNPVDSRNLTVG
Sbjct: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLACYDPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHVETYLSVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|V4V991|V4V991_CITCL (Protein kinase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10000515mg PE=4 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 2.862e-115 Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0 Query: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQL CY+PRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNH ETYL+VANNTYQGLTTCQAMMSQNPVDSRNLTVG
Sbjct: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLACYDPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHVETYLSVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5PAK0|A0A2H5PAK0_CITUN (Protein kinase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_118620 PE=4 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 8.705e-115 Identity = 165/170 (97.06%), Postives = 168/170 (98.82%), Query Frame = 0 Query: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQL CY+PRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPV+IDYLFKTSHPNLIASIN+ITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETY TVANNTYQGLTTCQAMMSQNPVDSRNLTVG
Sbjct: 1 MSAKFCRCWLVQVEVVLVLVWSIQGQQTYVDNHQLACYDPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVSIDYLFKTSHPNLIASINNITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYFTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39SZS0|A0AA39SZS0_ACESA (LysM domain-containing protein OS=Acer saccharum OX=4024 GN=LWI29_005399 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.159e-56 Identity = 92/149 (61.74%), Postives = 115/149 (77.18%), Query Frame = 0 Query: 22 SIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
IQGQQ Y++NHQLDCYN YNN+TRGFDCNG+ SCQ+YLTFRSNP YN+ V I YL + IASIN++T+ AT+PTDT +++PVNCSCS YYQ+N TY +++ ETY TVAN+T+QGL+TCQAMMSQN V +NL+VG
Sbjct: 17 EIQGQQPYINNHQLDCYNKAYNNLTRGFDCNGVQSSCQSYLTFRSNPLYNSAVEIGYLLG-AKATQIASINNLTSDVATIPTDTVLVVPVNCSCSSL----YYQYNVTYRLKDKTETYFTVANDTFQGLSTCQAMMSQNKVGDKNLSVG 160
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39W4M7|A0AA39W4M7_ACESA (LysM domain-containing protein OS=Acer saccharum OX=4024 GN=LWI29_031748 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.753e-55 Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 0 Query: 22 SIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
IQGQQ Y++NHQLDCYN YNN+T GFDCNG+ SCQ+YLTFRSNP YN+ V I YL + IASIN++T+ AT+PTDT ++IPVNCSCS YYQ+N TY +++ ETY VAN+T+QGL+TCQAMMSQN V +NL+VG
Sbjct: 17 EIQGQQPYINNHQLDCYNKAYNNLTSGFDCNGVQSSCQSYLTFRSNPLYNSAVEIGYLLG-AKATQIASINNLTSDVATIPTDTVLVIPVNCSCSSL----YYQYNVTYRLKDKTETYFIVANDTFQGLSTCQAMMSQNKVGDKNLSVG 160
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6N2MV87|A0A6N2MV87_SALVM (LysM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS424823 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 4.302e-52 Identity = 92/162 (56.79%), Postives = 120/162 (74.07%), Query Frame = 0 Query: 15 VVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVGSFRFQV 176
V+L+ +QGQQTY+ NHQLDCYN +N T+G+ CNG+ SCQ+YLTFRS P YN+PV I YL S LIASIN++++ TAT+PT++ V++PVNCSC G YYQ N+TY I++ +ETY +VANNTYQGLTTCQ++MSQN RNL+V S Q+
Sbjct: 11 VLLLSPAGVQGQQTYLANHQLDCYNNAFNETTKGYLCNGVQSSCQSYLTFRSMPPYNSPVYIAYLLGVS-ATLIASINNLSSDTATIPTNSQVVVPVNCSCYG---RQYYQHNSTYRIKDKSETYFSVANNTYQGLTTCQSLMSQNSYGDRNLSV-SLDLQI 167
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7H5Z0|A0A5C7H5Z0_9ROSI (Protein kinase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_021001 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 6.992e-51 Identity = 90/149 (60.40%), Postives = 113/149 (75.84%), Query Frame = 0 Query: 22 SIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
IQGQQ YV+NHQLDCYN Y+N+TRGF+CN ++ SCQ+YLTFRSNP YN+ V I YL + IASIN++T+ AT+PTDT +++PVNCSCS YYQ+N TY ++ ETY VANNT+QGL+TCQAMMSQN V +NL+VG
Sbjct: 26 EIQGQQPYVNNHQLDCYNEAYDNLTRGFNCNVVHSSCQSYLTFRSNPLYNSAVQIGYLL-GAKATQIASINNLTSDVATIPTDTVLVVPVNCSCSSL----YYQYNVTYRLKEKLETYFIVANNTFQGLSTCQAMMSQNKVGDKNLSVG 169
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39RKN3|A0AA39RKN3_ACESA (Uncharacterized protein OS=Acer saccharum OX=4024 GN=LWI29_012235 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.927e-50 Identity = 90/149 (60.40%), Postives = 115/149 (77.18%), Query Frame = 0 Query: 22 SIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
IQGQQ Y++NHQ DCYN Y+N+TRGFDCNG++ SCQ+YLTFRSNP YN+ V I YL + + IASIN++T+ AT+PTDT +++PVNCSCS YYQ+N TY +++ ETY VANNT+QGL+TCQAMMSQN V +NL+VG
Sbjct: 26 EIQGQQPYINNHQPDCYNTAYDNLTRGFDCNGVH-SCQSYLTFRSNPLYNSAVGIGYLLR-AEATQIASINNLTSDVATIPTDTVLVVPVNCSCSSL----YYQYNVTYRLKDTLETYFIVANNTFQGLSTCQAMMSQNKVGDKNLSVG 168
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9Q1AJA3|A0A9Q1AJA3_SALPP (LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED OS=Salix purpurea OX=77065 GN=OIU79_016913 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.648e-50 Identity = 91/156 (58.33%), Postives = 117/156 (75.00%), Query Frame = 0 Query: 15 VVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
VVL+ +QGQQTY+ NHQLDCYN +N T+G+ CNG+ SCQ+YLTFRS P YN+PV I YL LIASIN++++ TAT+PT++ V++PVNCSC G YYQ N+TY I++ +ETY +VANNTYQGLTTCQ++MSQN RNL+VG
Sbjct: 11 VVLLSPAGVQGQQTYLANHQLDCYNNAFNETTKGYLCNGVQSSCQSYLTFRSMPPYNSPVLIAYLLGVP-ATLIASINNLSSDTATIPTNSQVVVPVNCSCYG---RQYYQHNSTYRIKDKSETYFSVANNTYQGLTTCQSLMSQNSYGDRNLSVG 162
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9Q0P3H7|A0A9Q0P3H7_9ROSI (PROTEIN LYK5 OS=Salix koriyanagi OX=2511006 GN=OIU74_019337 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.259e-50 Identity = 91/156 (58.33%), Postives = 117/156 (75.00%), Query Frame = 0 Query: 15 VVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
VVL+ +QGQQTY+ NHQLDCYN +N T+G+ CNG+ SCQ+YLTFRS P YN+PV I YL LIASIN++++ TAT+PT++ V++PVNCSC G YYQ N+TY I++ +ETY +VANNTYQGLTTCQ++MSQN RNL+VG
Sbjct: 11 VVLLSPAGVQGQQTYLANHQLDCYNNAFNETTKGYLCNGVQSSCQSYLTFRSMPPYNSPVLIAYLLGVP-ATLIASINNLSSDTATIPTNSQVVVPVNCSCYG---RQYYQHNSTYRIKDKSETYFSVANNTYQGLTTCQSLMSQNSYGDRNLSVG 162
BLAST of hap2-g6208.t2 vs. ExPASy Swiss-Prot (2024)
Match: sp|O22808|LYK5_ARATH (Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.069e-31 Identity = 81/170 (47.65%), Postives = 103/170 (60.59%), Query Frame = 0 Query: 6 CRCWLVQVEVVLVLVWSI---QGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHA--ETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
C + V + L+L +++ + QQ YV+NHQL C Y+NIT GF CNG PSC++YLTF S P YNT +I L S I SIN++ T +PT V+IP NCSCS G +YQ N TY + + ETY +VAN+TYQ L+TCQAMMSQN R LT G
Sbjct: 4 CTLHALSVTLFLLLFFAVSPAKAQQPYVNNHQLACEVRVYDNITNGFTCNG-PPSCRSYLTFWSQPPYNTADSIAKLLNVSAAE-IQSINNLPTATTRIPTRELVVIPANCSCSSSSGG-FYQHNATYNLSGNRGDETYFSVANDTYQALSTCQAMMSQNRYGERQLTPG 170
BLAST of hap2-g6208.t2 vs. ExPASy Swiss-Prot (2024)
Match: sp|O64825|LYK4_ARATH (LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.195e-25 Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 0 Query: 13 VEVVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
V ++L L QQ YV DC G+ CNGL +CQAY+ FRS PS++T +I LF P+L++S+N + T + P+ V+IP+ CSC+ GD Q N TYTIQ + ++Y +AN+T QGL+TCQA+ QN V S++L G
Sbjct: 10 VFILLSLSSFATAQQPYVGISTTDCSVSDNTTSVFGYSCNGLNKTCQAYVIFRSTPSFSTVTSISSLFSVD-PSLVSSLNDASPST-SFPSGQQVIIPLTCSCT----GDDSQSNITYTIQPN-DSYFAIANDTLQGLSTCQALAKQNNVSSQSLFPG 160
BLAST of hap2-g6208.t2 vs. Araport11
Match: | (Symbols: AtLYK5, LYK5 | LysM-containing receptor-like kinase 5 | chr2:14219848-14221842 REVERSE LENGTH=664) HSP 1 Score: 123.635 bits (309), Expect = 1.083e-32 Identity = 81/170 (47.65%), Postives = 103/170 (60.59%), Query Frame = 0 Query: 6 CRCWLVQVEVVLVLVWSI---QGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHA--ETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
C + V + L+L +++ + QQ YV+NHQL C Y+NIT GF CNG PSC++YLTF S P YNT +I L S I SIN++ T +PT V+IP NCSCS G +YQ N TY + + ETY +VAN+TYQ L+TCQAMMSQN R LT G
Sbjct: 4 CTLHALSVTLFLLLFFAVSPAKAQQPYVNNHQLACEVRVYDNITNGFTCNG-PPSCRSYLTFWSQPPYNTADSIAKLLNVSAAE-IQSINNLPTATTRIPTRELVVIPANCSCSSSSGG-FYQHNATYNLSGNRGDETYFSVANDTYQALSTCQAMMSQNRYGERQLTPG 170
BLAST of hap2-g6208.t2 vs. Araport11
Match: | (Symbols: LYK4, AtLYK4 | LysM-containing receptor-like kinase 4 | chr2:10120242-10122080 REVERSE LENGTH=612) HSP 1 Score: 106.301 bits (264), Expect = 1.209e-26 Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 0 Query: 13 VEVVLVLVWSIQGQQTYVDNHQLDCYNPRYNNITRGFDCNGLYPSCQAYLTFRSNPSYNTPVTIDYLFKTSHPNLIASINSITNVTATLPTDTPVLIPVNCSCSGGGDGDYYQFNTTYTIQNHAETYLTVANNTYQGLTTCQAMMSQNPVDSRNLTVG 170
V ++L L QQ YV DC G+ CNGL +CQAY+ FRS PS++T +I LF P+L++S+N + T + P+ V+IP+ CSC+ GD Q N TYTIQ + ++Y +AN+T QGL+TCQA+ QN V S++L G
Sbjct: 10 VFILLSLSSFATAQQPYVGISTTDCSVSDNTTSVFGYSCNGLNKTCQAYVIFRSTPSFSTVTSISSLFSVD-PSLVSSLNDASPST-SFPSGQQVIIPLTCSCT----GDDSQSNITYTIQPN-DSYFAIANDTLQGLSTCQALAKQNNVSSQSLFPG 160 The following BLAST results are available for this feature:
BLAST of hap2-g6208.t2 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of hap2-g6208.t2 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of hap2-g6208.t2 vs. Araport11
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus garrawayi UQ v1.0 proteins
Date Performed: 2024-10-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap2-g6208.t2_Cgarrawayi-UQ_v1 ID=hap2-g6208.t2_Cgarrawayi-UQ_v1; Name=hap2-g6208.t2; organism=Citrus garrawayi; type=mRNA; length=558bpback to top protein sequence of hap2-g6208.t2_Cgarrawayi-UQ_v1 >hap2-g6208.t2_Cgarrawayi-UQ_v1 ID=hap2-g6208.t2_Cgarrawayi-UQ_v1; Name=hap2-g6208.t2_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=186bpback to top mRNA from alignment at hap2-C.garr_03:119103..119710+ Legend: start_codonCDSexonpolypeptideintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=608bp; location=Sequence derived from: hap2-C.garr_03:119103..119710+ (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap2-C.garr_03:119103..119710+ >hap2-g6208.t2_Cgarrawayi-UQ_v1 ID=hap2-g6208.t2_Cgarrawayi-UQ_v1; Name=hap2-g6208.t2; organism=Citrus garrawayi; type=CDS; length=558bp; location=Sequence derived from: hap2-C.garr_03:119103..119710+ (Citrus garrawayiback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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