hap2-g6650.t3
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067H042|A0A067H042_CITSI (Uroporphyrinogen-III synthase (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0221282mg PE=3 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 3.297e-178 Identity = 250/259 (96.53%), Postives = 252/259 (97.30%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVRSSW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 287
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5NH05|A0A2H5NH05_CITUN (Uroporphyrinogen-III synthase OS=Citrus unshiu OX=55188 GN=CUMW_044530 PE=3 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 6.018e-178 Identity = 251/259 (96.91%), Postives = 253/259 (97.68%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVRSSW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 287
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067GX46|A0A067GX46_CITSI (Uroporphyrinogen-III synthase (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0221282mg PE=3 SV=1) HSP 1 Score: 499.204 bits (1284), Expect = 1.588e-177 Identity = 249/258 (96.51%), Postives = 251/258 (97.29%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 285
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|V4V7I8|V4V7I8_CITCL (Uroporphyrinogen-III synthase OS=Citrus clementina OX=85681 GN=CICLE_v10001965mg PE=3 SV=1) HSP 1 Score: 497.664 bits (1280), Expect = 1.602e-176 Identity = 249/258 (96.51%), Postives = 251/258 (97.29%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 34 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 288
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067GXG0|A0A067GXG0_CITSI (Uroporphyrinogen-III synthase OS=Citrus sinensis OX=2711 GN=CISIN_1g0221282mg PE=3 SV=1) HSP 1 Score: 494.967 bits (1273), Expect = 8.258e-176 Identity = 249/259 (96.14%), Postives = 251/259 (96.91%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|V4T983|V4T983_CITCL (Uroporphyrinogen-III synthase OS=Citrus clementina OX=85681 GN=CICLE_v10001965mg PE=3 SV=1) HSP 1 Score: 494.967 bits (1273), Expect = 1.122e-175 Identity = 249/259 (96.14%), Postives = 251/259 (96.91%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 34 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 289
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|V4T988|V4T988_CITCL (Uroporphyrinogen-III synthase OS=Citrus clementina OX=85681 GN=CICLE_v10001965mg PE=3 SV=1) HSP 1 Score: 492.656 bits (1267), Expect = 1.291e-174 Identity = 249/259 (96.14%), Postives = 251/259 (96.91%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG
Sbjct: 34 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 289
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067GXG5|A0A067GXG5_CITSI (Uroporphyrinogen-III synthase (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0221282mg PE=3 SV=1) HSP 1 Score: 444.891 bits (1143), Expect = 2.033e-156 Identity = 224/233 (96.14%), Postives = 226/233 (97.00%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACI 234
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVRSSW NLISDTEQWSNSVACI
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|V4T4F5|V4T4F5_CITCL (Uroporphyrinogen-III synthase OS=Citrus clementina OX=85681 GN=CICLE_v10001965mg PE=3 SV=1) HSP 1 Score: 444.121 bits (1141), Expect = 4.421e-156 Identity = 223/233 (95.71%), Postives = 225/233 (96.57%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIG 235
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACI
Sbjct: 34 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIA 263
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067H9K8|A0A067H9K8_CITSI (Uroporphyrinogen-III synthase (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0221282mg PE=3 SV=1) HSP 1 Score: 439.113 bits (1128), Expect = 4.813e-154 Identity = 223/233 (95.71%), Postives = 225/233 (96.57%), Query Frame = 0 Query: 3 QFSRIQASSDATSASASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACI 234
QFSRIQASSDATSASAS NSNPKVVVTRERGKNGKLIKALAKH IDCLELPLIQHA+GPDTDRLSSVLN DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV+HVDQTVL QALSIPVVAVASPSAVR SW NLISDTEQWSNSVACI
Sbjct: 31 QFSRIQASSDATSASAS--NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACI 260
BLAST of hap2-g6650.t3 vs. ExPASy Swiss-Prot (2024)
Match: sp|O48721|HEM4_ARATH (Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UROS PE=1 SV=2) HSP 1 Score: 350.132 bits (897), Expect = 1.136e-120 Identity = 173/236 (73.31%), Postives = 197/236 (83.47%), Query Frame = 0 Query: 25 PKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
P+VVVTRERGKN ++IKAL K+ I LELPLIQHARGPD DRL+SVLND FDWIIITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASELP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L QALS PV++VASPSAVR +W +LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEG
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVR-AWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299
BLAST of hap2-g6650.t3 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q10QR9|HEM4_ORYSJ (Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=UROS PE=2 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 9.096e-113 Identity = 164/243 (67.49%), Postives = 186/243 (76.54%), Query Frame = 0 Query: 18 ASASNSNPKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
A +S P VVVTRERGKN KLI AL KH + LELPLI+H GPDTDRLS+VL D FDWI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA GK LASELP+ C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +L ALS PVVAVASPSA+R +W NL S + W N++ACIGETTASAAK+ GLK++YYPT PGL+G
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKFDWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLILKPALSAPVVAVASPSALR-AWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGLDG 281
BLAST of hap2-g6650.t3 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q59294|HEM4_RUMJO (Porphyrin biosynthesis protein HemD OS=Ruminiclostridium josui OX=1499 GN=hemD PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 5.903e-9 Identity = 62/235 (26.38%), Postives = 104/235 (44.26%), Query Frame = 0 Query: 26 KVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRL-SSVLNDTIFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT----EPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNV 250
K++VTR + +G L++ L + + +E P I+ P ++L + N + WI++TS +F + G N +IG VG+ TA +EV L F+P G+ LA + + + VL +A AS++I L + + R+ Y T E V ++++ L + S S V + + D S + CIG TA AAK+ L+ V
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSKNGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRHLALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKKSIVHGELK--YITFTSASTVE-GFIASMKDIPLESLTAVCIGNKTAEAAKKYNLRYV 480
BLAST of hap2-g6650.t3 vs. Araport11
Match: | (Symbols: DUF3, ATDUF3, HEMD, ATUROS, UROS | ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, UROPORPHYRINOGEN III SYNTHASE | chr2:11287863-11290224 REVERSE LENGTH=299) HSP 1 Score: 350.903 bits (899), Expect = 2.973e-122 Identity = 174/237 (73.42%), Postives = 198/237 (83.54%), Query Frame = 0 Query: 25 PKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG* 261
P+VVVTRERGKN ++IKAL K+ I LELPLIQHARGPD DRL+SVLND FDWIIITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASELP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L QALS PV++VASPSAVR +W +LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEG*
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVR-AWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG* 300
BLAST of hap2-g6650.t3 vs. Araport11
Match: | (Symbols: DUF3, ATDUF3, HEMD, ATUROS, UROS | ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, UROPORPHYRINOGEN III SYNTHASE | chr2:11287666-11290224 REVERSE LENGTH=321) HSP 1 Score: 350.132 bits (897), Expect = 1.188e-121 Identity = 173/236 (73.31%), Postives = 197/236 (83.47%), Query Frame = 0 Query: 25 PKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVRSSWFNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 260
P+VVVTRERGKN ++IKAL K+ I LELPLIQHARGPD DRL+SVLND FDWIIITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASELP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L QALS PV++VASPSAVR +W +LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEG
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVR-AWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299
BLAST of hap2-g6650.t3 vs. Araport11
Match: | (Symbols: DUF3, ATDUF3, HEMD, ATUROS, UROS | ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, UROPORPHYRINOGEN III SYNTHASE | chr2:11288115-11290224 REVERSE LENGTH=254) HSP 1 Score: 279.641 bits (714), Expect = 8.472e-95 Identity = 138/190 (72.63%), Postives = 158/190 (83.16%), Query Frame = 0 Query: 25 PKVVVTRERGKNGKLIKALAKHWIDCLELPLIQHARGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVYHVDQTVLMQALSIPVVAVASPSAVR 214
P+VVVTRERGKN ++IKAL K+ I LELPLIQHARGPD DRL+SVLND FDWIIITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASELP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L QALS PV++VASPSAVR
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVR 254 The following BLAST results are available for this feature:
BLAST of hap2-g6650.t3 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of hap2-g6650.t3 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of hap2-g6650.t3 vs. Araport11
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus garrawayi UQ v1.0 proteins
Date Performed: 2024-10-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap2-g6650.t3_Cgarrawayi-UQ_v1 ID=hap2-g6650.t3_Cgarrawayi-UQ_v1; Name=hap2-g6650.t3; organism=Citrus garrawayi; type=mRNA; length=783bpback to top protein sequence of hap2-g6650.t3_Cgarrawayi-UQ_v1 >hap2-g6650.t3_Cgarrawayi-UQ_v1 ID=hap2-g6650.t3_Cgarrawayi-UQ_v1; Name=hap2-g6650.t3_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=261bpback to top mRNA from alignment at hap2-C.garr_03:2820241..2826085- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=5845bp; location=Sequence derived from: hap2-C.garr_03:2820241..2826085- (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap2-C.garr_03:2820241..2826085- >hap2-g6650.t3_Cgarrawayi-UQ_v1 ID=hap2-g6650.t3_Cgarrawayi-UQ_v1; Name=hap2-g6650.t3; organism=Citrus garrawayi; type=CDS; length=783bp; location=Sequence derived from: hap2-C.garr_03:2820241..2826085- (Citrus garrawayiback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|