huyou00011608-RA
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A067GWR9|A0A067GWR9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047760mg PE=4 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 8.665e-141 Identity = 193/194 (99.48%), Postives = 194/194 (100.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFG+SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG Sbjct: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|V4SJN6|V4SJN6_CITCL (Protein DCL, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10002565mg PE=4 SV=1) HSP 1 Score: 397.897 bits (1021), Expect = 6.246e-140 Identity = 192/194 (98.97%), Postives = 193/194 (99.48%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MA+PMLF GLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG Sbjct: 1 MASPMLFWGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7H5U5|A0A5C7H5U5_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021632 PE=4 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 8.379e-109 Identity = 151/194 (77.84%), Postives = 166/194 (85.57%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAA +L RG+PL R R AARLL P FC AA SE +PEE +SSA+ TTTLL+VK P +YH DPDYRKW+DKE+EILRDIEPI FLAK+I+HS RYMDGERLT +DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGS Sbjct: 1 MAASLLLRGVPLQRLRLAARLLVQPSRQFCLAAASESNKPEENVSSAEKTTTTLLSVKHPVRYHSLDDPDYRKWRDKEEEILRDIEPITFLAKDIIHSERYMDGERLTVEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSS 194
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39VE88|A0AA39VE88_ACESA (DCL protein OS=Acer saccharum OX=4024 GN=LWI29_014721 PE=4 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 1.127e-108 Identity = 151/194 (77.84%), Postives = 166/194 (85.57%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAA +L RG+PL R R AARLL P FC AA SE +PEE +SSA+ TTTLL+VK P +YH DPDYRKW+DKE+EILRDIEPI FLAK+I+HS RYMDGERLT +DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGS Sbjct: 1 MAASLLLRGVPLQRLRLAARLLVQPSRKFCLAAASESNKPEENVSSAEKTTTTLLSVKHPVRYHSLDDPDYRKWRDKEEEILRDIEPITFLAKDIIHSERYMDGERLTVEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSS 194
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A061FIP8|A0A061FIP8_THECC (DCL protein OS=Theobroma cacao OX=3641 GN=TCM_033766 PE=4 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 7.110e-101 Identity = 148/200 (74.00%), Postives = 168/200 (84.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRP------AARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAAP+L +G PLLR R AARLL PR +C+AA E EE++SSA+ ++T+L+V EPPKYHRW DPDYRKWKDKE+EILRDIEPI+ L+KEILHS RYMDGERLT +DE VVEKLL++HPHSEDKIGCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HF RGSG Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCTAA--ESAGHEEEVSSAEK-SSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A9W7IB93|A0A9W7IB93_HIBTR (DCL protein OS=Hibiscus trionum OX=183268 GN=HRI_002781300 PE=4 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 4.512e-97 Identity = 141/200 (70.50%), Postives = 164/200 (82.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRP------AARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAAP+L +G+PL R R +A ++ PR +C AA S Q E++SSA+ N++ +L V+EPPKYHRW DPDYRKWKDKE+EILRDI+PI+ L KEILHS RYMDGERLT DE V++KLL +HPHSEDK+GCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGSG Sbjct: 1 MAAPLLLKGIPLFRLRLQRFNRLSAGIVSSPRRPWCVAAESSGRQ--EEVSSAEKNSS-VLGVREPPKYHRWDDPDYRKWKDKEEEILRDIQPIISLVKEILHSDRYMDGERLTVSDEETVLDKLLRHHPHSEDKVGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A5B7BJS3|A0A5B7BJS3_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_037492 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 6.438e-96 Identity = 143/197 (72.59%), Postives = 161/197 (81.73%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRAT---FCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAAP+L RG+PLLRFR L L T +C+AA E +P++ +S+A TT + K+PP Y RW DPDYRKWKDKE EILRDI+PI L KEILHS RYMDGERLTA+DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF +SRCLFV+RTDGGWIDFSYQKCLRAYIR+KYP HAERFIREHF RGSG Sbjct: 1 MAAPLLLRGVPLLRFRLQHHRLALGILTHRPWCTAA--ESARPDDDVSNA-GQTTAVFRAKDPPNYPRWDDPDYRKWKDKEGEILRDIDPITLLTKEILHSDRYMDGERLTAEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPFHAERFIREHFKRGSG 194
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A6A2WRM6|A0A6A2WRM6_HIBSY (F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116997pilonHSYRG00945 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 6.609e-96 Identity = 141/200 (70.50%), Postives = 162/200 (81.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPA------ARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MA+P+L +G+PLLR R A + PR FC+A S+ T +E++SSA+ + ++LTV++PPKYHRW DPDYRKWKDKE+EILRDIEPI+ L KEILHS RY DGERL DE V+EKLL +HPHSEDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGSG Sbjct: 1 MASPLLLKGIPLLRIRLQRYNCLFAGTVSSPRRPFCAA--SDTTGHKEEVSSAEK-SGSVLTVRDPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLVKEILHSNRYKDGERLIVSDEETVLEKLLRHHPHSEDKIGCGLDSIMVDRHPQFSRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A1U7XY00|A0A1U7XY00_NICSY (Protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 8.982e-96 Identity = 136/197 (69.04%), Postives = 160/197 (81.22%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 MAAP+L RG PLLR R + L P + +A SE QP + +S ++NTTT+L K+PPKY RW DPDYRKWK++E +IL+DIEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPH EDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS Sbjct: 1 MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSASSESGQPYDDAASIEDNTTTVLRTKDPPKYPRWPDPDYRKWKERETQILKDIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T1N1T6|A0A8T1N1T6_CARIL (DCL protein OS=Carya illinoinensis OX=32201 GN=CIPAW_16G037700 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.364e-95 Identity = 141/201 (70.15%), Postives = 160/201 (79.60%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLR-------FRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194 MAAP+L RGLPL R +R AA PR +C++A EP++ ++ LSS D +T + +PPKY RW DPDYRKWKDKE EIL+DI PI L KEILHS RY+DGERLT +DE+AVVEKLLAYHPHS+DKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI+EHF RGSG Sbjct: 1 MAAPLLLRGLPLFRLRLHHHQYRAAAGFFSTPRRPWCTSA--EPSRADDSLSSTDKSTPAW-SAGDPPKYPRWDDPDYRKWKDKEVEILKDIVPITLLTKEILHSNRYLDGERLTVEDEKAVVEKLLAYHPHSDDKIGCGLDSIMVDRHPQFKRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIKEHFKRGSG 198
BLAST of huyou00011608-RA vs. ExPASy Swiss-Prot (2024)
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.361e-35 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0 Query: 70 DYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 D W D ED+IL D P++ + ILHS +Y G+RL+ D +R ++++LL YHP + KIG G+D I V HP F NSRCLF+VR DG +DFSY KC++ IR YP +A+ FI HF + Sbjct: 98 DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of huyou00011608-RA vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 2.181e-35 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 ++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF + Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of huyou00011608-RA vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5D869|NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.650e-30 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 +E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F +SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++ Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of huyou00011608-RA vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LQ02|NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 2.014e-8 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 ++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+ Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 227.254 bits (578), Expect = 5.564e-76 Identity = 114/179 (63.69%), Postives = 132/179 (73.74%), Query Frame = 0 Query: 18 AARLLGLPRATFCSAAPS-EPTQPEEKLSSADNNTTTLLTVKEPPKYHRW--ADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 A +L R CS A + + + +S + + + V P + W DPDYRKWK+ E EILRDIEPI LAKEILHS RY+DGERL +DE+ V+EKLL YHP+S+DKIGCGLD IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAY+RDKYPSHAERFIREHF R S Sbjct: 28 AGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 126.716 bits (317), Expect = 2.263e-36 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 ++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF + Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 125.561 bits (314), Expect = 7.320e-36 Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0 Query: 76 DKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF + Sbjct: 99 DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B | DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 119.783 bits (299), Expect = 3.689e-31 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191 +E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F +SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++ Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23359611 REVERSE LENGTH=1145) HSP 1 Score: 56.9954 bits (136), Expect = 1.693e-9 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 ++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+ Sbjct: 1029 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1135
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1439) HSP 1 Score: 56.6102 bits (135), Expect = 2.034e-9 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 ++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+ Sbjct: 1323 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1429
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 56.6102 bits (135), Expect = 2.036e-9 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 ++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+ Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of huyou00011608-RA vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 56.6102 bits (135), Expect = 2.036e-9 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193 ++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+ Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443 The following BLAST results are available for this feature:
BLAST of huyou00011608-RA vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-23 (Blastp of Citrus changshanensis cv. Huyou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of huyou00011608-RA vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-23 (Blastp of Citrus changshanensis cv. Huyou v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of huyou00011608-RA vs. Araport11
Analysis Date: 2024-08-23 (Blastp of Citrus changshanensis cv. Huyou v1.0 proteins vs Araport11) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus changshanensis cv. Huyou v1.0 proteins
Date Performed: 2024-08-23 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCitChan.Huyou.1.0.huyou00011608-RA ID=drCitChan.Huyou.1.0.huyou00011608-RA; Name=huyou00011608-RA; organism=Citrus changshanensis; type=mRNA; length=585bpback to top protein sequence of drCitChan.Huyou.1.0.huyou00011608-RA >drCitChan.Huyou.1.0.huyou00011608-RA ID=drCitChan.Huyou.1.0.huyou00011608-RA; Name=drCitChan.Huyou.1.0.huyou00011608-RA; organism=Citrus changshanensis; type=polypeptide; length=194bpback to top mRNA from alignment at chr3:35185545..35188839- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3295bp; location=Sequence derived from: chr3:35185545..35188839- (Citrus changshanensisback to top Coding sequence (CDS) from alignment at chr3:35185545..35188839- >drCitChan.Huyou.1.0.huyou00011608-RA ID=drCitChan.Huyou.1.0.huyou00011608-RA; Name=huyou00011608-RA; organism=Citrus changshanensis; type=CDS; length=585bp; location=Sequence derived from: chr3:35185545..35188839- (Citrus changshanensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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