mi_v1.0.alternate_g18163.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2IWB2|A0A6D2IWB2_9BRAS (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS16988 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.534e-29 Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG C+ +AELWGLY GL +AW+ G L VEVDSL V + T + T+ +SL+ + +DW V I HVYREANH AD L NYA ++PL LH F + PL L S++
Sbjct: 61 LNIGRCNAPMAELWGLYYGLCIAWEKGITRLEVEVDSLMVVGFIKTGICDTHPLSSLVHLCHGFLMKDWEVRIAHVYREANHLADGLANYAFTLPLGLHTFDSVPLDLLSVL 172
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2JQQ1|A0A6D2JQQ1_9BRAS (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29755 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.334e-26 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG C+ +AELWGLY GL +AW+ G L VEVDSL V + T + T+ + L+ + +DW V I HVYREANH A+ L NYA S+PL LH F + PL L S++
Sbjct: 179 LNIGRCNAPMAELWGLYYGLCIAWEKGITRLEVEVDSLMVVGFIKTGICDTHPLSPLVHLCHGFLMKDWEVRIAHVYREANHLANGLANYAFSLPLGLHTFGSVPLDLLSVL 290
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2JFG3|A0A6D2JFG3_9BRAS (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29448 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.672e-24 Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG C+ +AELWGLY GL +AW+ G L VEVDS V V T + T+ + L+ + +DW V I H YREAN+ AD L NYA S+PL LH F + P GL +I+
Sbjct: 434 LNIGRCTAPMAELWGLYYGLCIAWEKGVTRLEVEVDSALVVGFVKTGICDTHPLSFLVHLCHGFLSKDWEVRITHTYREANNLADGLANYAFSLPLGLHSFDSVPPGLVAIL 545
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2KV92|A0A6D2KV92_9BRAS (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40238 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.689e-24 Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG C+ +AELWGLY GL +AW+ G L VEVDS V V T + T+ + L+ + +DW V I H YREAN+ AD L NYA S+PL LH F + P GL +I+
Sbjct: 434 LNIGRCTAPMAELWGLYYGLCIAWEKGVTRLEVEVDSALVVGFVKTGICDTHPLSFLVHLCHGFLSKDWEVRITHTYREANNLADGLANYAFSLPLGLHSFDSVPPGLVAIL 545
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: Q9SI81|Q9SI81_ARATH (F23N19.5 OS=Arabidopsis thaliana OX=3702 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.080e-24 Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG C +AELWG+Y GL MAW G L +EVDS V + T + ++ + L++ + +DW V I HVYREAN AD L NYA +PL H F +PP L SI+
Sbjct: 107 LNIGRCLAPLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYREANRLADGLANYAFDLPLGYHAFASPPNSLDSIL 218
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2L087|A0A6D2L087_9BRAS (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS41894 PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.077e-23 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+ IG CS +AELWG+Y GL++AW+ G L VEVDS V + T + T+ + L+ D + +DW V I HVYREAN AD L NYA S+P H F P L ++
Sbjct: 68 LKIGHCSAPMAELWGVYYGLVIAWEKGIPRLDVEVDSAMVVGFLKTGICDTHPLSFLVHLCHDFLSKDWEVRIAHVYREANRLADGLANYAFSLPFGFHSFDLVPPSLLDVL 179
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: A0A6D2L6C3|A0A6D2L6C3_9BRAS (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS42350 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.605e-23 Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIGIC+ +AELWG+Y GLL W+ L VEVDS V + T + ++ + L++ I +DW V I HVYREAN AD L NYA +VPL H FP P L SI+
Sbjct: 146 LNIGICTAPLAELWGVYYGLLTVWEKRVARLEVEVDSELVVGFLKTGICASHPLSFLVRLCLGFIVRDWIVCISHVYREANRLADGLANYAFTVPLGFHCFPLVPTSLDSIL 257
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: Q9SJZ8|Q9SJZ8_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana OX=3702 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.967e-23 Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG+CS +AELWG+Y GL +AW G R + +EVDS V ++T + ++ + LL+ D + + W V I HVYREAN AD L NYA S+ L LH+ + P ++SI+
Sbjct: 195 VNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSIL 306
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: B9SG51|B9SG51_RICCO (RNase H domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1155880 PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.568e-23 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYA 91
+NIG CS+T A LWGLY GL +AW+ G R L V+VDS+C LV+ ++ YA L+ I+ ++ Q+W V++ HVYREAN AAD L ++A
Sbjct: 12 VNIGRCSITGAGLWGLYHGLTLAWKLGIRKLLVKVDSMCAVPLVTGEKDISSSYAPLVSGIRSMLGQNWQVSVSHVYREANFAADGLASFA 102
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Match: Q9LNS0|Q9LNS0_ARATH (F1L3.4 OS=Arabidopsis thaliana OX=3702 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.171e-23 Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIGICS +AELWG Y GL +AW+ G L +E+DS V + T + ++ + L++ L+ +DW V I HVYREAN AD L NYA +PL H+F + P + SI+
Sbjct: 127 LNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIV 238
BLAST of mi_v1.0.alternate_g18163.t1 vs. Araport11
Match: AT5G61090.2 (| Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein | Chr5:24574902-24577585 REVERSE LENGTH=657 | 201606) HSP 1 Score: 60.077 bits (144), Expect = 1.716e-11 Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 0 Query: 10 VAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
VA L +YQGL W G R + +E S + ++T + +LL A KD+I ++W I H+ +E N A++L + P L F PP GL +
Sbjct: 547 VAGLLAIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGACKDMILKEWECDIYHISKEQNSCAEWLAKRSEEQPQELVFFEYPPRGLMDFL 649
BLAST of mi_v1.0.alternate_g18163.t1 vs. Araport11
Match: AT5G61090.1 (| Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein | Chr5:24574902-24577585 REVERSE LENGTH=657 | 201606) HSP 1 Score: 60.077 bits (144), Expect = 1.716e-11 Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 0 Query: 10 VAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
VA L +YQGL W G R + +E S + ++T + +LL A KD+I ++W I H+ +E N A++L + P L F PP GL +
Sbjct: 547 VAGLLAIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGACKDMILKEWECDIYHISKEQNSCAEWLAKRSEEQPQELVFFEYPPRGLMDFL 649
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.181e-20 Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 0 Query: 1 MNIGICSVTVAELWGLYQGLLMAWQHGCRWLSVEVDSLCVTQLVSTPVIQTNEYASLLQAIKDLIKQDWHVTIRHVYREANHAADFLTNYALSVPLNLHIFPNPPLGLASII 112
+NIG CS AELWG+Y GL AW+ + +EVDS + + T + ++ + L++ +++DW V I HVYREAN AD L NYA S+ L H F P ++S++
Sbjct: 494 LNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLL 605 The following BLAST results are available for this feature:
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of mi_v1.0.alternate_g18163.t1 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
BLAST of mi_v1.0.alternate_g18163.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus inodora CRC3784 v1.0 v1.0 proteins
Date Performed: 2024-01-19 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >mi_v1.0.alternate_g18163.t1-ucr_v1 ID=mi_v1.0.alternate_g18163.t1-ucr_v1; Name=mi_v1.0.alternate_g18163.t1; organism=Citrus inodora; type=mRNA; length=348bpback to top protein sequence of mi_v1.0.alternate_g18163.t1-ucr_v1 >mi_v1.0.alternate_g18163.t1-ucr_v1 ID=mi_v1.0.alternate_g18163.t1-ucr_v1; Name=mi_v1.0.alternate_g18163.t1-ucr_v1; organism=Citrus inodora; type=polypeptide; length=115bpback to top mRNA from alignment at Alt_Scaffold_6:17422109..17422456- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=348bp; location=Sequence derived from: Alt_Scaffold_6:17422109..17422456- (Citrus inodoraback to top Coding sequence (CDS) from alignment at Alt_Scaffold_6:17422109..17422456- >mi_v1.0.alternate_g18163.t1-ucr_v1 ID=mi_v1.0.alternate_g18163.t1-ucr_v1; Name=mi_v1.0.alternate_g18163.t1; organism=Citrus inodora; type=CDS; length=348bp; location=Sequence derived from: Alt_Scaffold_6:17422109..17422456- (Citrus inodoraback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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