mi_v1.0.alternate_g18280.t1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A067F0N6|A0A067F0N6_CITSI (BHLH domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039972mg PE=4 SV=1) HSP 1 Score: 349.747 bits (896), Expect = 6.862e-122 Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0 Query: 1 MEYVNAKALASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 MEYVNAK LASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENII+FADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY Sbjct: 1 MEYVNAKTLASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIINFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A2H5MX20|A0A2H5MX20_CITUN (BHLH domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_000350 PE=4 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 2.618e-121 Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0 Query: 1 MEYVNAKALASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 MEYVNAK LASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENII+F DHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY Sbjct: 1 MEYVNAKTLASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIINFTDHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: V4S5I8|V4S5I8_CITCL (BHLH domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013640mg PE=4 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 2.084e-120 Identity = 165/169 (97.63%), Postives = 166/169 (98.22%), Query Frame = 0 Query: 1 MEYVNAKALASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 MEYVNAK LASGKGNKKKK SGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENII+F DHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY Sbjct: 1 MEYVNAKTLASGKGNKKKKISGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIINFTDHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A1R3JRW2|A0A1R3JRW2_9ROSI (BHLH domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_14496 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 8.078e-39 Identity = 81/146 (55.48%), Postives = 93/146 (63.70%), Query Frame = 0 Query: 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESL-----YSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMK 168 +KLSTDPQSVAAR+RRHRISDRFKILQSMVPGGTKMDT SMLDEAI YVKFLK IW H+ +I+F D + PP + LPGS YS L YSS N P Q Q SE P D FQG++ + + D +MK Sbjct: 35 VKLSTDPQSVAARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIQYVKFLKTQIWLHQAMINFVD---DDSAPPASLF-LPGSNNYSYPVLQGNIVYSSSNTTNLNPALQ----QYSELLPLPDSCCFQGDQKPNMPYHDVYMK 172
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A540L2R9|A0A540L2R9_MALBA (BHLH domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_033913 PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.102e-38 Identity = 82/173 (47.40%), Postives = 106/173 (61.27%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHH------------HEHD--PPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 + +G K KS G ++LSTDPQSVAAR+RRHRISDRFKILQS+VPGGTK+DT SML+EAI+YVKFLK IW H+++I+ AD HH H H P F QLP L++ N ++AA Q S A ++N FQG+ ETL +++ +MKY Sbjct: 25 NNRGGGKNKSKG-----VRLSTDPQSVAARERRHRISDRFKILQSLVPGGTKLDTVSMLEEAIHYVKFLKTQIWLHQSMINSADDHHDPSPSMLMDIPAHRHGLHPTGCFDQLPPQHHQQTHDLFAHSNFVSAAASVQPPS-PAVNIPIMPEYNCFQGQ--ETLANIEAYMKY 189
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A498IE11|A0A498IE11_MALDO (BHLH domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_036219 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.647e-37 Identity = 81/173 (46.82%), Postives = 105/173 (60.69%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHH------------HEHD--PPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 + +G K KS G ++LSTDPQSVAAR+RRHRISDRFKILQS+VPGGTK+DT SML+EAI+YVKFLK IW H+++I+ D HH H H P F QLP L++ N ++AA Q S A ++N FQG+ ETL +++ +MKY Sbjct: 25 NNRGGGKNKSKG-----VRLSTDPQSVAARERRHRISDRFKILQSLVPGGTKLDTVSMLEEAIHYVKFLKTQIWLHQSMINSVDDHHDPSPSMLMDIPAHRHGLHPTGCFDQLPPQHHQQTHDLFAHSNFVSAAASVQPPS-PAVNIPIMPEYNCFQGQ--ETLANIEAYMKY 189
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A5E4EFY2|A0A5E4EFY2_PRUDU (PREDICTED: mRNAion factor OS=Prunus dulcis OX=3755 GN=ALMOND_2B010527 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 3.326e-36 Identity = 80/170 (47.06%), Postives = 104/170 (61.18%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHH---HHEHDPPVAFG-----QLPGSFPY---SPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 +G G K + SKS ++LSTDPQSVAAR+RRHRISDRFKILQS+VPGGTKMDT SML+EAI+YVKFLKA IW H+++I+F D HH+ + QLP P + + S NN P P + P D N FQG+E+ + +++ +MKY Sbjct: 24 NGTGEKIEGGVKSKSKGVRLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKFLKAQIWLHQSMINFVDDDDGLHHDRSSSSSSSSMFQYQLPADHPLHHPTGSHDFYSQNNFVQPPSPAMNI-------PLPDPNYFQGQEA--IPNIEAYMKY 184
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A251NWV4|A0A251NWV4_PRUPE (BHLH domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G281600 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.748e-36 Identity = 81/171 (47.37%), Postives = 103/171 (60.23%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHH---HHEHDPPVAFG-----QLPGS----FPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 +G G K + SKS ++LSTDPQSVAAR+RRHRISDRFKILQS+VPGGTKMDT SML+EAI+YVKFLKA IW H+++I+F D HH+ + QLP P YS NN P P + P D N FQG+E+ + +++ +MKY Sbjct: 24 NGTGEKIEGGVKSKSKGVRLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKFLKAQIWLHQSMINFVDDDDGLHHDRSSSSSSSSMFQYQLPADHHLHHPTGSHDFYSQ-NNFVQPPSPAMNI-------PLPDPNYFQGQEA--MPNIEAYMKY 184
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A7N2M3Z5|A0A7N2M3Z5_QUELO (BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 5.323e-36 Identity = 80/161 (49.69%), Postives = 101/161 (62.73%), Query Frame = 0 Query: 10 ASGKGNKKKKSSGSK-SNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 ++G NK+KK G K S +KLSTDPQSVAAR+RRHRISDRFKILQS+VPGG+KMDT SML+EAI+YVKFLK IW H+ +I+F D DP + L G++ P+ Y + N L D +Q SE P + FQ EE + D + KY Sbjct: 17 SAGNNNKEKKPKGGKRSKGVKLSTDPQSVAARERRHRISDRFKILQSLVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINFVD-----EDPSLY---LAGTY-LPPQESYYAQNVLV-------DQVQPSELVPRPISSSFQCEEP---VPFDTYAKY 158
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Match: A0A2P5XH69|A0A2P5XH69_GOSBA (BHLH domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA18027 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 6.391e-36 Identity = 77/140 (55.00%), Postives = 91/140 (65.00%), Query Frame = 0 Query: 30 LSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDFNVFQGEESETLMHLDGFMKY 169 LSTDPQSVAAR+RRHRISDRFKILQSMVPGGTKMDT SMLDEAI+YVKFLK IW H+ +I+F D D F LP SFP ++Y S N P P + MQ S+ P D + FQG + M D +M++ Sbjct: 38 LSTDPQSVAARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQAMINFVD-----DDSSSLF--LPTSFPVE-TNIYPSSN-----PNPNLEPMQPSQLLPLPD-SCFQGPQQT--MPYDAYMRH 161
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT5G01305.1 (| transcription factor bHLH140-like protein | Chr5:125304-125819 FORWARD LENGTH=171 | 201606) HSP 1 Score: 122.094 bits (305), Expect = 1.968e-35 Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHH 96 S GN K+ S S LSTDPQSVAAR RRHRISDRFKILQSMVPGG KMDT SMLDEAI+YVKFLKA IW+H+N++ F + H Sbjct: 29 SETGNTKRSRSTST-----LSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDH 109
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT3G21330.1 (| basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Chr3:7507720-7508841 FORWARD LENGTH=373 | 201606) HSP 1 Score: 100.523 bits (249), Expect = 1.908e-25 Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFP 114 K +K+STDPQ+VAARQRR RIS++ ++LQ++VPGGTKMDTASMLDEA NY+KFL+A + EN+ D + ++F P SFP Sbjct: 269 KRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN------LSFSSAPTSFP 353
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT4G00120.1 (| basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Chr4:42601-43197 REVERSE LENGTH=198 | 201606) HSP 1 Score: 80.8777 bits (198), Expect = 2.872e-19 Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0 Query: 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80 +++S DPQ+V AR+RR RIS++ +IL+ +VPGG KMDTASMLDEAI Y KFLK Sbjct: 116 VRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT5G43175.1 (| basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Chr5:17334261-17335234 FORWARD LENGTH=223 | 201606) HSP 1 Score: 75.0998 bits (183), Expect = 8.027e-17 Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0 Query: 3 YVNAKALASGKGNKKKKSSGSKSNPMK-----------LSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 + + ++L+S + +K+ G SN K +++DPQS+ AR+RR RI+DR K LQS+VP GTK+D ++ML++A++YVKFL+ I Sbjct: 100 WRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQI 191
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT1G66470.1 (| ROOT HAIR DEFECTIVE6 | Chr1:24795326-24796598 FORWARD LENGTH=298 | 201606) HSP 1 Score: 76.2554 bits (186), Expect = 8.306e-17 Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0 Query: 17 KKKSSG----SKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 KK SSG +K P DPQS+AA+ RR RIS+R KILQ +VP GTK+D +ML++AI+YVKFL+ + Sbjct: 184 KKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQV 254
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT4G33880.1 (| ROOT HAIR DEFECTIVE 6-LIKE 2 | Chr4:16239566-16241052 REVERSE LENGTH=352 | 201606) HSP 1 Score: 75.485 bits (184), Expect = 2.597e-16 Identity = 31/53 (58.49%), Postives = 46/53 (86.79%), Query Frame = 0 Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 +TDPQS+ AR+RR RI++R +ILQ++VP GTK+D ++ML+EA++YVKFL+ I Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQI 325
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT2G14760.1 (| basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Chr2:6321840-6323312 REVERSE LENGTH=328 | 201606) HSP 1 Score: 74.3294 bits (181), Expect = 4.567e-16 Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 0 Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 +TDPQS+ AR+RR RI++R +ILQ +VP GTK+D ++ML+EA+ YVKFL+ I Sbjct: 244 ATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQI 296
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT5G37800.1 (| RHD SIX-LIKE 1 | Chr5:15036197-15037574 FORWARD LENGTH=307 | 201606) HSP 1 Score: 73.1738 bits (178), Expect = 9.777e-16 Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0 Query: 17 KKKSSGS--KSNPMKLST--DPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 KK SSG+ K P ++ DPQS+AA+ RR RIS+R K+LQ +VP GTK+D +ML++AI YVKFL+ + Sbjct: 190 KKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQV 260
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT1G27740.1 (| root hair defective 6-like 4 | Chr1:9654753-9655806 FORWARD LENGTH=258 | 201606) HSP 1 Score: 72.4034 bits (176), Expect = 1.244e-15 Identity = 34/84 (40.48%), Postives = 58/84 (69.05%), Query Frame = 0 Query: 3 YVNAKALASGKGNKKKKSSGSKSNPMKL---STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 +V+ ++L++ ++K + K +TDPQS+ AR+RR +I++R K LQ++VP GTK+D ++ML+EA++YVKFL+ I Sbjct: 143 WVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQI 226
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Match: AT5G09750.1 (| basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Chr5:3026401-3027075 REVERSE LENGTH=224 | 201606) HSP 1 Score: 70.0922 bits (170), Expect = 6.100e-15 Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88 K +++S DPQSVAAR RR RIS+R +ILQ +VPGGTKMDTASMLDEAI YVKFLK I N Sbjct: 119 KRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNN 183
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: BH140_ARATH (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.194e-31 Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 0 Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFPYSPE 118 S GN K+ S S LSTDPQSVAAR RRHRISDRFKILQSMVPGG KMDT SMLDEAI+YVKFLKA IW+H+N++ F + +H+ + PG+ + P+ Sbjct: 29 SETGNTKRSRSTST-----LSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFIN----DHETTSSCTYSPGAGEFGPK 127
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: LAX1_ORYSJ (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.389e-26 Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0 Query: 29 KLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENII 90 KLSTDPQSVAAR+RRHRISDRF++L+S+VPGG+KMDT SML++AI+YVKFLKA + H+ + Sbjct: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQAAL 100
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.865e-24 Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIHFADHHHHEHDPPVAFGQLPGSFP 114 K +K+STDPQ+VAARQRR RIS++ ++LQ++VPGGTKMDTASMLDEA NY+KFL+A + EN+ D + ++F P SFP Sbjct: 269 KRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN------LSFSSAPTSFP 353
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: LF_ORYSJ (Transcription factor LATE FLOWERING OS=Oryza sativa subsp. japonica OX=39947 GN=LF PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.627e-18 Identity = 34/54 (62.96%), Postives = 49/54 (90.74%), Query Frame = 0 Query: 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKA 81 +++S+DPQ+VAAR RR R+S+R ++LQ +VPGG+KMDTA+MLDEA +Y+KFLK+ Sbjct: 301 VRISSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKS 354
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 2.807e-18 Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0 Query: 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80 +++S DPQ+V AR+RR RIS++ +IL+ +VPGG KMDTASMLDEAI Y KFLK Sbjct: 116 VRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 7.846e-16 Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0 Query: 3 YVNAKALASGKGNKKKKSSGSKSNPMK-----------LSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 + + ++L+S + +K+ G SN K +++DPQS+ AR+RR RI+DR K LQS+VP GTK+D ++ML++A++YVKFL+ I Sbjct: 100 WRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQI 191
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: RHD6_ARATH (Transcription factor RHD6 OS=Arabidopsis thaliana OX=3702 GN=RHD6 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.118e-16 Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0 Query: 17 KKKSSG----SKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 KK SSG +K P DPQS+AA+ RR RIS+R KILQ +VP GTK+D +ML++AI+YVKFL+ + Sbjct: 184 KKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQV 254
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: RSL2_ARATH (Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.538e-15 Identity = 31/53 (58.49%), Postives = 46/53 (86.79%), Query Frame = 0 Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 +TDPQS+ AR+RR RI++R +ILQ++VP GTK+D ++ML+EA++YVKFL+ I Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQI 325
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.464e-15 Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 0 Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 +TDPQS+ AR+RR RI++R +ILQ +VP GTK+D ++ML+EA+ YVKFL+ I Sbjct: 244 ATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQI 296
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Match: RSL1_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 9.557e-15 Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0 Query: 17 KKKSSGS--KSNPMKLST--DPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 KK SSG+ K P ++ DPQS+AA+ RR RIS+R K+LQ +VP GTK+D +ML++AI YVKFL+ + Sbjct: 190 KKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQV 260 The following BLAST results are available for this feature:
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of mi_v1.0.alternate_g18280.t1 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs Araport11) Total hits: 10 Position : 0 Zoom : x 1
BLAST of mi_v1.0.alternate_g18280.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus inodora CRC3784 v1.0 v1.0 proteins
Date Performed: 2024-01-19 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >mi_v1.0.alternate_g18280.t1-ucr_v1 ID=mi_v1.0.alternate_g18280.t1-ucr_v1; Name=mi_v1.0.alternate_g18280.t1; organism=Citrus inodora; type=mRNA; length=510bpback to top protein sequence of mi_v1.0.alternate_g18280.t1-ucr_v1 >mi_v1.0.alternate_g18280.t1-ucr_v1 ID=mi_v1.0.alternate_g18280.t1-ucr_v1; Name=mi_v1.0.alternate_g18280.t1-ucr_v1; organism=Citrus inodora; type=polypeptide; length=169bpback to top mRNA from alignment at Alt_Scaffold_6:18365705..18366214- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=510bp; location=Sequence derived from: Alt_Scaffold_6:18365705..18366214- (Citrus inodoraback to top Coding sequence (CDS) from alignment at Alt_Scaffold_6:18365705..18366214- >mi_v1.0.alternate_g18280.t1-ucr_v1 ID=mi_v1.0.alternate_g18280.t1-ucr_v1; Name=mi_v1.0.alternate_g18280.t1; organism=Citrus inodora; type=CDS; length=510bp; location=Sequence derived from: Alt_Scaffold_6:18365705..18366214- (Citrus inodoraback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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