mi_v1.0.alternate_g19004.t1 | Citrus Genome Database

Transcript Overview


Name	mi_v1.0.alternate_g19004.t1
Unique Name	mi_v1.0.alternate_g19004.t1-ucr_v1
Type	mRNA
Organism	Citrus inodora (Australian wild lime)
Sequence length	690

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus inodora CRC3784 genome v1.0	2023-05-24
InterProScan Analysis for Citrus inodora CRC3784 v1.0 v1.0 proteins	2024-01-19
Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt TrEMBL	2024-01-19
Blastp of Citrus inodora CRC3784 v1.0 proteins vs Araport11	2024-01-19
Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt Swissprot	2024-01-19

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
fhminL0083	Fortunella hindsii genome v1.0	Fortunella hindsii
minminL441	Citrus inodora CRC3784 genome v1.0	Citrus inodora
minzkR1070	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
eglminL1179	Citrus glauca CRC3463 genome v1	Citrus glauca
csminL1305	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cmminL0793	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
dvaminL613	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
dvbminL618	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
eglminL2791	Citrus glauca CRC3463 genome v1	Citrus glauca
ccminL366	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmjminL0789	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cleminL0360	Citrus limon cv. Eureka genome v1.0	Citrus limon
cauminL655	Citrus australis genome v1.0 (UQ)	Citrus australis
cleminL0426	Citrus limon cv. Eureka genome v1.0	Citrus limon
ccrminL0674	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrminL1542	Citrus australasica CRC3672 genome v1	Citrus australasica

Orthologs


Gene/Transcript	Assembly	Species
gene-KPL70_018668-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
eg_v1.0.primary_g22055.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
gene-KPL71_018847-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
Cg6g016940.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
Pt6g006160.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
CMJ_chr6_017340.1	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
NM_gene41092.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Cau_v1.alternate_g17613.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
g12641.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
NM_gene44314.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
eg_v1.0.alternate_g25431.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
sjg071280.1	Fortunella hindsii genome v1.0	Fortunella hindsii
Cau_v1.primary_g18717.t1	Citrus australasica CRC3672 genome v1	Citrus australasica

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
mi_v1.0.primary_g19210.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
mi_v1.0.alternate_g19004	mi_v1.0.alternate_g19004-ucr_v1	Citrus inodora	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
mi_v1.0.alternate_g19004.t1.exon8	mi_v1.0.alternate_g19004.t1.exon.8-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon7	mi_v1.0.alternate_g19004.t1.exon.7-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon6	mi_v1.0.alternate_g19004.t1.exon.6-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon5	mi_v1.0.alternate_g19004.t1.exon.5-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon4	mi_v1.0.alternate_g19004.t1.exon.4-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon3	mi_v1.0.alternate_g19004.t1.exon.3-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon2	mi_v1.0.alternate_g19004.t1.exon.2-ucr_v1	Citrus inodora	exon
mi_v1.0.alternate_g19004.t1.exon1	mi_v1.0.alternate_g19004.t1.exon.1-ucr_v1	Citrus inodora	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.8-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.7-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.6-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.5-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.4-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.3-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.2-ucr_v1	Citrus inodora	CDS
cds.mi_v1.0.alternate_g19004.t1	mi_v1.0.alternate_g19004.t1.cds.1-ucr_v1	Citrus inodora	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
mi_v1.0.alternate_g19004.t1-ucr_v1	mi_v1.0.alternate_g19004.t1-ucr_v1	Citrus inodora	polypeptide
mi_v1.0.alternate_g19004.t1-ucr_v1	mi_v1.0.alternate_g19004.t1-ucr_v1-protein	Citrus inodora	polypeptide

Homology

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: V4SXB4|V4SXB4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012657mg PE=3 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 4.501e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ
Sbjct:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: V4UVG1|V4UVG1_CITCL (U3 small nucleolar RNA-associated protein 11 OS=Citrus clementina OX=85681 GN=CICLE_v10012657mg PE=3 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 4.852e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ
Sbjct:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A067F1G9|A0A067F1G9_CITSI (U3 small nucleolar RNA-associated protein 11 OS=Citrus sinensis OX=2711 GN=CISIN_1g027033mg PE=3 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 4.852e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ
Sbjct:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A067EQG7|A0A067EQG7_CITSI (U3 small nucleolar RNA-associated protein 11 OS=Citrus sinensis OX=2711 GN=CISIN_1g027033mg PE=3 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 6.895e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ
Sbjct:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A2H5MZF7|A0A2H5MZF7_CITUN (U3 small nucleolar RNA-associated protein 11 OS=Citrus unshiu OX=55188 GN=CUMW_007080 PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 4.258e-142
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHR EGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ
Sbjct:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRQEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: V4UJG0|V4UJG0_CITCL (U3 small nucleolar RNA-associated protein 11 OS=Citrus clementina OX=85681 GN=CICLE_v10010418mg PE=3 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 2.428e-129
Identity = 182/199 (91.46%), Postives = 189/199 (94.97%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PRRAHKERAQPQSRKKFGLLEKHKDYV+RAKAYHKKEE+IRRLKEKAAFRNPDEFY KMIKTKTVDGVHRLE EANKYTQEELMLMKTQDIGY+LQKLQSERNKIEKLTTMLHSLD+N SSRHVY+AEDREE KEIK  SGRK  LP FDDIPDHIKRKTAASYRELEGRKKRVQELEKL+MDMSL KELQ
Sbjct:    1 MSSLRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYHKKEETIRRLKEKAAFRNPDEFYLKMIKTKTVDGVHRLESEANKYTQEELMLMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDREETKEIKYISGRKATLPVFDDIPDHIKRKTAASYRELEGRKKRVQELEKLFMDMSLQKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A2H5PVC8|A0A2H5PVC8_CITUN (U3 small nucleolar RNA-associated protein 11 OS=Citrus unshiu OX=55188 GN=CUMW_171030 PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 1.010e-127
Identity = 180/199 (90.45%), Postives = 188/199 (94.47%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PRRAHKERAQPQSRKKFGLLEKHKDYV+RAKAYHKKEE+IRRLKEKAAFRNPDEFY KMIKTK VDGVHRLE EANKYTQEEL+LMKTQDIGY+LQKLQSERNKIEKLTTMLHSLD+N SSRHVY+AEDREE KEIK  SGRK  LP FDDIPDHIKRKTAASYRELEGRKKRVQELEKL+MDMSL KELQ
Sbjct:    1 MSSLRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYHKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDREETKEIKYISGRKATLPVFDDIPDHIKRKTAASYRELEGRKKRVQELEKLFMDMSLQKELQ 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A2H5PVC6|A0A2H5PVC6_CITUN (U3 small nucleolar RNA-associated protein 11 OS=Citrus unshiu OX=55188 GN=CUMW_171030 PE=3 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 8.563e-125
Identity = 180/208 (86.54%), Postives = 188/208 (90.38%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIK---------RKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PRRAHKERAQPQSRKKFGLLEKHKDYV+RAKAYHKKEE+IRRLKEKAAFRNPDEFY KMIKTK VDGVHRLE EANKYTQEEL+LMKTQDIGY+LQKLQSERNKIEKLTTMLHSLD+N SSRHVY+AEDREE KEIK  SGRK  LP FDDIPDHIK         RKTAASYRELEGRKKRVQELEKL+MDMSL KELQ
Sbjct:    1 MSSLRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYHKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDREETKEIKYISGRKATLPVFDDIPDHIKRLCCIFSVCRKTAASYRELEGRKKRVQELEKLFMDMSLQKELQ 208

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A2H5PVD8|A0A2H5PVD8_CITUN (U3 small nucleolar RNA-associated protein 11 OS=Citrus unshiu OX=55188 GN=CUMW_171030 PE=3 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 6.136e-120
Identity = 180/240 (75.00%), Postives = 188/240 (78.33%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIR-----------------------------------------RLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PRRAHKERAQPQSRKKFGLLEKHKDYV+RAKAYHKKEE+IR                                         RLKEKAAFRNPDEFY KMIKTK VDGVHRLE EANKYTQEEL+LMKTQDIGY+LQKLQSERNKIEKLTTMLHSLD+N SSRHVY+AEDREE KEIK  SGRK  LP FDDIPDHIKRKTAASYRELEGRKKRVQELEKL+MDMSL KELQ
Sbjct:    1 MSSLRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYHKKEETIRVTFLLPQLCFNSCIVIRLHFYLIVRYCPCLCMAVLCSVWLQRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDREETKEIKYISGRKATLPVFDDIPDHIKRKTAASYRELEGRKKRVQELEKLFMDMSLQKELQ 240

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Match: A0A2H5PVD3|A0A2H5PVD3_CITUN (U3 small nucleolar RNA-associated protein 11 OS=Citrus unshiu OX=55188 GN=CUMW_171030 PE=3 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 2.069e-118
Identity = 180/235 (76.60%), Postives = 188/235 (80.00%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDR---------------------------EEAKEIKSQSGRKDALPDFDDIPDHIK---------RKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PRRAHKERAQPQSRKKFGLLEKHKDYV+RAKAYHKKEE+IRRLKEKAAFRNPDEFY KMIKTK VDGVHRLE EANKYTQEEL+LMKTQDIGY+LQKLQSERNKIEKLTTMLHSLD+N SSRHVY+AEDR                           EE KEIK  SGRK  LP FDDIPDHIK         RKTAASYRELEGRKKRVQELEKL+MDMSL KELQ
Sbjct:    1 MSSLRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYHKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENMEETKEIKYISGRKATLPVFDDIPDHIKRLCCIFSVCRKTAASYRELEGRKKRVQELEKLFMDMSLQKELQ 235

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. Araport11
Match: AT3G60360.1 (| embryo sac development arrest 14 | Chr3:22312477-22314002 REVERSE LENGTH=228 | 201606)

HSP 1 Score: 261.922 bits (668), Expect = 3.532e-89
Identity = 128/199 (64.32%), Postives = 160/199 (80.40%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NPDEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L    +  S RHVY+AEDREEA+E++ Q GR  +     +IP  IK+K   SYR+LEGRK R ++LEKLY DMS+ KELQ
Sbjct:    1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNPDEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASLQCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKSRAKDLEKLYTDMSMQKELQ 198

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_ORYSJ (Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0810000 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 2.817e-102
Identity = 142/199 (71.36%), Postives = 176/199 (88.44%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNPDEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++MLH LDN   ++HVYFAEDREE KEI+S+  +K +    D+IP  IKRKTA+SYRELE RK+RVQ+LEKLY DM+L KEL+
Sbjct:    1 MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNPDEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSMLHELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQRVQKLEKLYADMALQKELK 199

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_ARATH (Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana OX=3702 GN=At3g60360 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.452e-88
Identity = 128/199 (64.32%), Postives = 160/199 (80.40%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
            MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NPDEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L    +  S RHVY+AEDREEA+E++ Q GR  +     +IP  IK+K   SYR+LEGRK R ++LEKLY DMS+ KELQ
Sbjct:    1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNPDEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASLQCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKSRAKDLEKLYTDMSMQKELQ 198

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_DICDI (Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum OX=44689 GN=utp11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.078e-35
Identity = 91/227 (40.09%), Postives = 129/227 (56.83%), Query Frame = 0

Query:    1 MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD-----FDDIPDHIKRK--------------------TAASYRELEGRKKRVQELEKLYMDMSLHK 196
            MSS  LR  LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+NPDEF +KMI +K VDGVH  E       +E+++ +KTQDI Y+  K +++  KIE+L   L  +D+   P+ + +Y     ++ KE+K+ S  K  D +PD        IP   K K                    TA SY+EL+ RK R  +L K  MD+S  K
Sbjct:    1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFKNPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQATLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPDAFNGSLSTIPKISKLKEGSLVVNPKTAPTLGQLEAMTATSYKELKERKLRRDQLFKAEMDLSKSK 222

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_MOUSE (Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus OX=10090 GN=Utp11 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.890e-32
Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 0

Query:   11 RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEA 141
            R H+ER+QP  RK+ GLLEK KDY +RA  YHKK++ +R L++KA  +NPDEFY+KM + K  DGVH  +    + T E+L LM+TQDI Y+  K  +E  KIE+L + LH LD       +HV+F + ++E 
Sbjct:   14 REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRAKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEV 146

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_HUMAN (Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens OX=9606 GN=UTP11 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.799e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 0

Query:   11 RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKEI 144
            R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM + K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD      ++HV+F + ++E ++ 
Sbjct:   14 REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQF 149

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_RAT (Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus OX=10116 GN=Utp11 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.812e-30
Identity = 63/147 (42.86%), Postives = 96/147 (65.31%), Query Frame = 0

Query:    2 SSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKEI 144
            ++ R A+   +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM + K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD      +RHV+F + ++E ++ 
Sbjct:    3 AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNRHVFFFDTKKEVEQF 149

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_SCHPO (Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp11 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.562e-30
Identity = 62/145 (42.76%), Postives = 92/145 (63.45%), Query Frame = 0

Query:    2 SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSL----DNNPSSRHVYFAEDREEAK 142
            SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y  K++ ++RL+EKA  RNPDEFY +M   KT +GV   + E +    + + ++KTQDIG++      ER KI+ L   +H++    + N S +H  F ++ +EAK
Sbjct:    3 SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDEFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMHTVGAHRNKNESRKHTIFVDNVKEAK 147

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_CHATD (U3 small nucleolar RNA-associated protein 11 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=UTP11 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.586e-24
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK--------------TKTVDGVHRLEGEANK-YTQEELMLMKTQDIGYV 102
            MSSLR+A+ RRAHKERAQP  R++ G+LEK KDY +RA+ Y KK+  ++ L++KAA RN DEFYF M+               T TVDG        NK  + E + L+KTQD+GYV
Sbjct:    1 MSSLRHAIQRRAHKERAQPLERQRLGILEKKKDYRLRARDYKKKQAVLKSLRQKAAERNEDEFYFGMMSRKGPGSALTRGKGFTGTVDGDR-----GNKALSVETVRLLKTQDLGYV 112

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_DROME (Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster OX=7227 GN=CG1789 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-23
Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 0

Query:    1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAED 137
            MSS +NA    ++ H+ER QP+SR+  G LEK KDY  RA    KK+++++ L  +A  +NPDEFY  MI +K  +  H  +   +++T E+L LM+TQD+ YV+ K   ER KIE+L   L  +D     +++ + F ED
Sbjct:    1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDED 141

[Close]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Match: UTP11_YEAST (U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP11 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.859e-19
Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 0

Query:    1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEI 144
            M+ L + + ++ H+ER+Q  SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA  RNPDE+Y  M   KT      +   H  E E    + +++ L+KTQD  YV    Q E  K+EK    L       S  H  F + RE+  E 
Sbjct:    1 MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQLMF---KSSGNHTIFVDSREKMNEF 146

The following BLAST results are available for this feature:

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
BLAST of mi_v1.0.alternate_g19004.t1 vs. Araport11
BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
V4SXB4\|V4SXB4_CITCL	4.501e-143	100.00	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
V4UVG1\|V4UVG1_CITCL	4.852e-143	100.00	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A067F1G9\|A0A067F1G9_CITSI	4.852e-143	100.00	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A067EQG7\|A0A067EQG7_CITSI	6.895e-143	100.00	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A2H5MZF7\|A0A2H5MZF7_CITUN	4.258e-142	99.50	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
V4UJG0\|V4UJG0_CITCL	2.428e-129	91.46	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A2H5PVC8\|A0A2H5PVC8_CITUN	1.010e-127	90.45	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A2H5PVC6\|A0A2H5PVC6_CITUN	8.563e-125	86.54	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A2H5PVD8\|A0A2H5PVD8_CITUN	6.136e-120	75.00	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]
A0A2H5PVD3\|A0A2H5PVD3_CITUN	2.069e-118	76.60	U3 small nucleolar RNA-associated protein 11 OS=Ci...	[more]

BLAST of mi_v1.0.alternate_g19004.t1 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs Araport11)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT3G60360.1	3.532e-89	64.32	\| embryo sac development arrest 14 \| Chr3:22312477...	[more]

BLAST of mi_v1.0.alternate_g19004.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
UTP11_ORYSJ	2.817e-102	71.36	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_ARATH	3.452e-88	64.32	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_DICDI	2.078e-35	40.09	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_MOUSE	5.890e-32	47.37	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_HUMAN	2.799e-30	44.85	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_RAT	3.812e-30	42.86	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_SCHPO	5.562e-30	42.76	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_CHATD	3.586e-24	48.72	U3 small nucleolar RNA-associated protein 11 OS=Ch...	[more]
UTP11_DROME	4.338e-23	40.43	Probable U3 small nucleolar RNA-associated protein...	[more]
UTP11_YEAST	1.859e-19	37.33	U3 small nucleolar RNA-associated protein 11 OS=Sa...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus inodora CRC3784 v1.0 v1.0 proteins
Date Performed: 2024-01-19

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007144	Small-subunit processome, Utp11	PIRSF	PIRSF015952	U3snoRNP11	coord: 1..199 e-value: 9.8E-59 score: 192.2
IPR007144	Small-subunit processome, Utp11	PFAM	PF03998	Utp11	coord: 10..199 e-value: 8.8E-55 score: 186.3
IPR007144	Small-subunit processome, Utp11	PANTHER	PTHR12838	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11	coord: 1..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Alt_Scaffold_6:22967096..22969898-
coding sequence from alignment at Alt_Scaffold_6:22967096..22969898-

mRNA sequence

>mi_v1.0.alternate_g19004.t1-ucr_v1 ID=mi_v1.0.alternate_g19004.t1-ucr_v1; Name=mi_v1.0.alternate_g19004.t1; organism=Citrus inodora; type=mRNA; length=690bp
ATGTCTTCTCTTAGGAATGCACTTCCTAGAAGGGCTCATAAGGAGCGAGC
TCAACCGCAATCGAGGAAGAAATTTGGGCTTCTTGAAAAGCACAAGGACT
ATGTTATTCGTGCAAAAGCATATCACAAGAAGGAGGAGTCTATACGGAGA
CTCAAAGAGAAGGCAGCATTTAGGAACCCGGATGAATTTTACTTTAAAAT
GATCAAAACAAAAACTGTTGATGGAGTACATAGACTAGAGGGTGAGGCAA
ACAAGTACACACAAGAAGAACTAATGCTGATGAAGACCCAGGATATAGGA
TATGTCCTTCAGAAACTGCAGAGCGAAAGAAATAAAATTGAAAAGTTAAC
TACTATGTTGCATTCTCTTGATAATAATCCATCAAGCAGACATGTTTACT
TTGCTGAAGACAGGGAAGAGGCAAAAGAAATAAAATCTCAATCTGGACGA
AAAGATGCATTGCCTGATTTTGACGACATTCCTGATCACATTAAGAGGAA
GACTGCAGCTTCCTATAGAGAACTAGAAGGGAGGAAAAAGAGAGTACAGG
AGTTGGAAAAACTGTATATGGATATGTCATTGCATAAGGAATTACAGAAA
AAGGGCCGGAAACGCAAACTACGTGAAGAGGAGATTGTTTGCCCAACCTC
CAAGGCTGTATATAAGTGGCGGTCTGAGCGGAAGCGCTAA

protein sequence of mi_v1.0.alternate_g19004.t1-ucr_v1

>mi_v1.0.alternate_g19004.t1-ucr_v1 ID=mi_v1.0.alternate_g19004.t1-ucr_v1; Name=mi_v1.0.alternate_g19004.t1-ucr_v1; organism=Citrus inodora; type=polypeptide; length=199bp
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRR
LKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIG
YVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGR
KDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQ

mRNA from alignment at Alt_Scaffold_6:22967096..22969898-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2803bp; location=Sequence derived from: Alt_Scaffold_6:22967096..22969898- (Citrus inodora
ATGTCTTCTCTTAGGAATGCACTTCCTAGAAGGGCTCATAAGGAGCGAGC
TCAACCGTAAGTGACACTATTTCCTTTTCAAAATCTTTCGTTTTGGGAAG
TTATTTGGAAACCCTTTTGAGATGAAATATCTTTGGTCCATGTTAGGCAA
TCGAGGAAGAAATTTGGGCTTCTTGAAAAGCACAAGGACTATGTTATTCG
TGCAAAAGCATATCACAAGAAGGAGGAGTCTATACGGGTAACATTCCTAC
TGCCACAATTATGTCTTAATTCTTGCATTGTCATTCTTCTTTGCTTCTAT
GTACCTGTTAGATATTGTCCATGCTTGCACATGGCTGTGTTTTATTCTGT
GTGGTTGCTTACAGAGACTCAAAGAGAAGGCAGCATTTAGGAACCCGGAT
GAATTTTACTTTAAAATGATCAAAACAAAAACTGTTGATGGAGTACATAG
ACTAGAGTAAGTTTACCATCGCATTGCTTTTCTTCATAATAATTTCTTCA
TCTTGTTTACAAATTGTGATTGACTGCCTGGTCTTATTCTTTTAGGGGTG
AGGCAAACAAGTACACACAAGAAGAACTAATGCTGATGAAGACCCAGGAT
ATAGGATATGTCCTTCAGAAACTGCAGAGCGAAAGAAATGTTAGTGATTG
CTTCTACATTGTGTTTATGGTGCATATAAGGATTGCCTTTTCAATTACAT
TTGCCGTAGTTATTTAAAAAACTATCTTTTGGTGCAGAAAATTGAAAAGT
TAACTACTATGTTGCATTCTCTTGATAATAATCCATCAAGCAGACATGTT
TACTTTGCTGAAGACAGGTTTGTGTTATCAAAACTCTCGTTTTTATGTGA
AGATGATAATATTCTTGACTTGTGTTGATCTTTTATATGGAGAATATATA
GATTCTCAATAAAGATAAGAGTGCTTGAGTGATACTTCTGAATTATTATG
TGGTGATCCCCTCCCCCTTTTGTTTTTAATTTTAATACTGAGTTGGAATA
CCTGAGTCATGGAATATTTTTCAATGAAAATATTGTTACACTGCGTTTGT
TGTAAAGTCTGGAGTATTTTTCGATGTTTTGAGTTGTCTGGTACAATTAG
TGGCCCCATTTTAGCTTGAATTTGCTACAATATGTTAAACAATCTGTAGA
TCCTTGCAATATATTATTTGAAGCAGGGATGACAAAAATCCCCACGGGGA
CGGGTACCCTTGGGGATTTTCCCCATTCGAGAAGGGTATGAGGATAATTT
CATACCCAATTTCTTATTCGGAGAAGGGACGGGGAAATTTTTTTACCCAA
TTTCTTATTCGGAGAAGGGACGGAGAAATTTTTTTACCCAATTTCTTATT
CGGGGAGGGGACGGGGATGAGGTGGAATCCTCATCCCCTACCCATTTCCC
CATTTTAATTTTTAATTTAATTTAATTTTTTAAAATTACTAGTAAATAAA
TAATGAAATTTGAATTATAAAATTATAAGTATTGGTAAAAATAAAAAATA
TCAAAATATTTATATTATTAAATTTTTAGGCCTAATTAACTAATTAAACT
CCTAAATTTTTATTTAGGACATTAAAAAGACCGGATAGATTCTATTAGCC
TAAAACTTTTGTTTTAATTTTAATATTCATTAAATATTTTAAACTTAAAT
TTATTTTTTATTTATCTTAAATCTATTTTTTATTTATTTTTAGATGTTAT
AATTGCCTACAACAAATCACAATTTTAATATATAATCTAATATAATATTT
GCTCTTGATTTGCTTCGACTTAACTATTGTGCTGTAAAGGGAATAGTCTA
CATTTATAAAGTGCCCACGGCACCATTGAAAAGTTAATTTTGAATCTAAA
TTTGATTTTATTTATAACAATTTTATATTAGGCTATTAATTTGTTCATGA
TAGTTCGTATCCCTTGCATGATGCGTTACTTACTAATTTAATGTATGTGA
CTTTTGTAATGGATATTAATGTAAGATATATTTCGAACTTTACTTTTATT
TGAATTTTTTATTTTAATATGATTAACTCAAAATAAAAAACAAAAAAAAT
ATATTAGTTATTCGGGGATCGGAAACCCTCGGGGATCCCCTGTTATTATT
CGGGGAGGGGATGAGGATTATCTTAAATAATTTTGACAGGGATGGGGAGG
GGACGGGGACATACGCAAAATATCGGGGATGAGTACGGGGAGATTGGTCC
CCTCCCCTCCCCTCCCCATTGCCATCCCTAATTTGAAGTTGGAATGAATA
TTTGGATTGCTTTTACTCTGTACTTATTGTATTTTGTGCAGGGAAGAGGC
AAAAGAAATAAAATCTCAATCTGGACGAAAAGATGCATTGCCTGATTTTG
ACGACATTCCTGATCACATTAAGAGGTAGGTGCTGAATGTTTAATGCATT
GTGTTGGACAAAAGTACTTTCCACAACCTGAGCTTATTCTTGCCTGATGA
TGCTCAACCAGAGTTGTTTTCAAGTTCTTCACAGACTATGTTGCATATTT
TCCGTTTGCAGGAAGACTGCAGCTTCCTATAGAGAACTAGAAGGGAGGAA
AAAGAGAGTACAGGAGTTGGAAAAACTGTATATGGATATGTCATTGCATA
AGGAATTACAGGTATAAAATGATCTCTTACTCCCTTTCTCTATCCGTCTA
TTGTGTTGGACTTGGACATAGACATTGCTGAGAATATTTCTCCTTTTCTT
TAATGATTAGAAAAAGGGCCGGAAACGCAAACTACGTGAAGAGGAGATTG
TTTGCCCAACCTCCAAGGCTGTATATAAGTGGCGGTCTGAGCGGAAGCGC
TAA

Coding sequence (CDS) from alignment at Alt_Scaffold_6:22967096..22969898-

>mi_v1.0.alternate_g19004.t1-ucr_v1 ID=mi_v1.0.alternate_g19004.t1-ucr_v1; Name=mi_v1.0.alternate_g19004.t1; organism=Citrus inodora; type=CDS; length=600bp; location=Sequence derived from: Alt_Scaffold_6:22967096..22969898- (Citrus inodora
ATGTCTTCTCTTAGGAATGCACTTCCTAGAAGGGCTCATAAGGAGCGAGC
TCAACCGCAATCGAGGAAGAAATTTGGGCTTCTTGAAAAGCACAAGGACT
ATGTTATTCGTGCAAAAGCATATCACAAGAAGGAGGAGTCTATACGGAGA
CTCAAAGAGAAGGCAGCATTTAGGAACCCGGATGAATTTTACTTTAAAAT
GATCAAAACAAAAACTGTTGATGGAGTACATAGACTAGAGGGTGAGGCAA
ACAAGTACACACAAGAAGAACTAATGCTGATGAAGACCCAGGATATAGGA
TATGTCCTTCAGAAACTGCAGAGCGAAAGAAATAAAATTGAAAAGTTAAC
TACTATGTTGCATTCTCTTGATAATAATCCATCAAGCAGACATGTTTACT
TTGCTGAAGACAGGGAAGAGGCAAAAGAAATAAAATCTCAATCTGGACGA
AAAGATGCATTGCCTGATTTTGACGACATTCCTGATCACATTAAGAGGAA
GACTGCAGCTTCCTATAGAGAACTAGAAGGGAGGAAAAAGAGAGTACAGG
AGTTGGAAAAACTGTATATGGATATGTCATTGCATAAGGAATTACAGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007144	SSU_processome_Utp11

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome