mi_v1.0.primary_g18110.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A067E1D2|A0A067E1D2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023054mg PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 6.936e-90 Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKG+TGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN ASKTSA
Sbjct: 160 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGVTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINSASKTSA 288 HSP 2 Score: 99.7525 bits (247), Expect = 6.410e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 Query: 1 MAAANEAKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 51
MAAANEA+QLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI
Sbjct: 31 MAAANEARQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 81
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: V4SNP3|V4SNP3_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012197mg PE=3 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 6.948e-90 Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKG+TGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN ASKTSA
Sbjct: 196 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGVTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINSASKTSA 324 HSP 2 Score: 100.138 bits (248), Expect = 7.522e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 Query: 1 MAAANEAKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 51
MAAANEA+QLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI
Sbjct: 67 MAAANEARQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 117
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A654FXV7|A0A654FXV7_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS21045 PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 5.925e-78 Identity = 115/161 (71.43%), Postives = 137/161 (85.09%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQNFIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L++SS+A I + Q I N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNITANSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP++KG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNVSSVAHIYTY-QEGIQFNSINDICSYSDKRAYGQSKLANILHANELSRQLQEEGVNITANSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A5B7A242|A0A5B7A242_DAVIN (Putative Short-chain dehydrogenase TIC 32 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_019835 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 6.564e-78 Identity = 128/236 (54.24%), Postives = 147/236 (62.29%), Query Frame = 0 Query: 1 MAAANEAKQLILKEDDTARVDTLKLDLSSIASIK----------------DFAQNFIALNLPLNILI------------------------------------------YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKT 178
M AANEAKQLIL ++TARVD LKLDLSS+ SI+ FA N + L ++LI YSDKKAYGQSKLAN+LHANELSRR +EEG NIT NSVHPG+IMTNL +HSA +MR LK F+ LWKN+PQGAATTCYVALHP LKG+TGKYFLDCNE PS AR+E LAKKLWD+SNK++N A T
Sbjct: 94 MEAANEAKQLILNGNETARVDVLKLDLSSMKSIRAFLDNFXQLSEDEVEMQFATNHLGHFLLTSLLIDKMKDTATATGIEGRIVNLSSIAHLHTYEEGIRFDKINDPDSYSDKKAYGQSKLANLLHANELSRRLKEEGANITVNSVHPGIIMTNLMRHSAFLMRILKVFTCLLWKNIPQGAATTCYVALHPKLKGVTGKYFLDCNEYTPSKFARNEVLAKKLWDYSNKLVNSAQNT 329
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A078FDZ4|A0A078FDZ4_BRANA (BnaA03g00530D protein OS=Brassica napus OX=3708 GN=BnaA03g00530D PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 7.611e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLARKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: M4CNE1|M4CNE1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 7.611e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLARKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A3N6RH00|A0A3N6RH00_BRACR (Uncharacterized protein (Fragment) OS=Brassica cretica OX=69181 GN=DY000_00021702 PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 7.917e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 159 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 318
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A397ZYB0|A0A397ZYB0_BRACM (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T09463Z PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 8.486e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLARKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A3P6ALG7|A0A3P6ALG7_BRAOL (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T12666H PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 8.864e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Match: A0A0D3AZF9|A0A0D3AZF9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 9.566e-78 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L+LSSIA I + + F ++N +I YSDK+AYGQSKLANILHANELSR+ QEEGVNIT NSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP LKG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNLSSIAHIYTYKEGIKFDSIN---DICCYSDKRAYGQSKLANILHANELSRQLQEEGVNITVNSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPTLKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT5G02540.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr5:568609-570720 FORWARD LENGTH=331 | 201606) HSP 1 Score: 243.047 bits (619), Expect = 9.270e-81 Identity = 114/161 (70.81%), Postives = 137/161 (85.09%), Query Frame = 0 Query: 17 TARVDTLKLDLSSIASIKDFAQNFIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
T+ V+ L++SS+A I + Q I + +I YSDK+AYGQSKLANILHANELSR+ QEEGVNITANSVHPGLI+TNLF+H+A++MRFLKFFSF+LWKN+PQGAATTCYVALHP++KG+TGKYF DCNE+ PS LARDETLA+KLWDFS K+IN SK
Sbjct: 162 TSGVEGRILNVSSVAHIYTY-QEGIQFDSINDICSYSDKRAYGQSKLANILHANELSRQLQEEGVNITANSVHPGLILTNLFQHTALLMRFLKFFSFYLWKNIPQGAATTCYVALHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT2G37540.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr2:15751695-15753820 REVERSE LENGTH=321 | 201606) HSP 1 Score: 190.66 bits (483), Expect = 2.238e-60 Identity = 93/173 (53.76%), Postives = 123/173 (71.10%), Query Frame = 0 Query: 10 LILKEDDTARVDTLK---LDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASK 177
L+ K TAR ++ ++LSSIA +++ F +N P YS+++AYGQSKL+N+LH+N LSRR QEEGVNIT NSVHPGL+ TNLF++S M+ + +F WKN+PQGAATTCYVALHP+L+G+TGKYF DCN + PS A + +LA KLWDFS +I+ SK
Sbjct: 152 LLDKMKSTARESGVQGRIVNLSSIAHTYTYSEGIKFQGINDPAG---YSERRAYGQSKLSNLLHSNALSRRLQEEGVNITINSVHPGLVTTNLFRYSGFSMKVFRAMTFLFWKNIPQGAATTCYVALHPDLEGVTGKYFGDCNIVAPSKFATNNSLADKLWDFSVFLIDSISK 321 HSP 2 Score: 62.3882 bits (150), Expect = 1.069e-11 Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0 Query: 3 AANEAKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 51
AANE+K++IL+ + ARVD L++D+SSI S++ F F+ALN+PLNILI
Sbjct: 69 AANESKEMILQMNPNARVDYLQIDVSSIKSVRSFVDQFLALNVPLNILI 117
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23420.3 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12226060-12228562 FORWARD LENGTH=333 | 201606) HSP 1 Score: 147.132 bits (370), Expect = 3.190e-43 Identity = 68/123 (55.28%), Postives = 93/123 (75.61%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL+ + ++ + + + ++ K+VPQGAATTCYVAL+P + G+TG+YF D N P L +D LAKKLWDFS K+ +
Sbjct: 209 YSSIRAYGQSKLCNVLHANELAKQLKEDGVNITANSLHPGAIMTNLWGYFNSYLAGAVGAVAKYMVKSVPQGAATTCYVALNPQVAGVTGEYFSDSNIAKPIELVKDTELAKKLWDFSTKLTD 331
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23420.2 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12226288-12228562 FORWARD LENGTH=316 | 201606) HSP 1 Score: 146.362 bits (368), Expect = 3.802e-43 Identity = 68/123 (55.28%), Postives = 93/123 (75.61%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL+ + ++ + + + ++ K+VPQGAATTCYVAL+P + G+TG+YF D N P L +D LAKKLWDFS K+ +
Sbjct: 192 YSSIRAYGQSKLCNVLHANELAKQLKEDGVNITANSLHPGAIMTNLWGYFNSYLAGAVGAVAKYMVKSVPQGAATTCYVALNPQVAGVTGEYFSDSNIAKPIELVKDTELAKKLWDFSTKLTD 314
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23420.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12226288-12228562 FORWARD LENGTH=316 | 201606) HSP 1 Score: 146.362 bits (368), Expect = 3.802e-43 Identity = 68/123 (55.28%), Postives = 93/123 (75.61%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL+ + ++ + + + ++ K+VPQGAATTCYVAL+P + G+TG+YF D N P L +D LAKKLWDFS K+ +
Sbjct: 192 YSSIRAYGQSKLCNVLHANELAKQLKEDGVNITANSLHPGAIMTNLWGYFNSYLAGAVGAVAKYMVKSVPQGAATTCYVALNPQVAGVTGEYFSDSNIAKPIELVKDTELAKKLWDFSTKLTD 314
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23430.4 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12229171-12231493 FORWARD LENGTH=312 | 201606) HSP 1 Score: 145.591 bits (366), Expect = 8.158e-43 Identity = 68/130 (52.31%), Postives = 95/130 (73.08%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL ++ + + + + ++ K+VPQGAATTCYVAL+P + G++G+YF D N P L +D LAKK+WDFS K+ + S S+
Sbjct: 182 YSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWDFSTKLTDSQSGESS 311
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23430.2 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12229171-12231493 FORWARD LENGTH=322 | 201606) HSP 1 Score: 145.206 bits (365), Expect = 1.110e-42 Identity = 68/130 (52.31%), Postives = 95/130 (73.08%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL ++ + + + + ++ K+VPQGAATTCYVAL+P + G++G+YF D N P L +D LAKK+WDFS K+ + S S+
Sbjct: 192 YSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWDFSTKLTDSQSGESS 321
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G11410.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:6945127-6947186 REVERSE LENGTH=317 | 201606) HSP 1 Score: 144.05 bits (362), Expect = 3.316e-42 Identity = 64/120 (53.33%), Postives = 89/120 (74.17%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKM 171
Y+ +AYGQSKL NILHA EL+R F+E+GVNITANS+HPG IMTNL ++ + + ++ K++PQGAATTCY ALHP KG++G+Y +D N P++ +D+ LAKKLW+FS ++
Sbjct: 192 YNTLQAYGQSKLGNILHATELARLFKEQGVNITANSLHPGSIMTNLLRYHSFINTIGNAVGKYVLKSIPQGAATTCYAALHPQAKGVSGEYLMDNNISDPNSQGKDKDLAKKLWEFSLRL 311
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23430.3 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12229171-12231493 FORWARD LENGTH=310 | 201606) HSP 1 Score: 142.51 bits (358), Expect = 1.008e-41 Identity = 67/129 (51.94%), Postives = 94/129 (72.87%), Query Frame = 0 Query: 53 SDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
S +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL ++ + + + + ++ K+VPQGAATTCYVAL+P + G++G+YF D N P L +D LAKK+WDFS K+ + S S+
Sbjct: 181 SSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWDFSTKLTDSQSGESS 309
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Match: AT4G23430.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr4:12229171-12231493 FORWARD LENGTH=320 | 201606) HSP 1 Score: 142.51 bits (358), Expect = 1.368e-41 Identity = 67/129 (51.94%), Postives = 94/129 (72.87%), Query Frame = 0 Query: 53 SDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
S +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL ++ + + + + ++ K+VPQGAATTCYVAL+P + G++G+YF D N P L +D LAKK+WDFS K+ + S S+
Sbjct: 191 SSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWDFSTKLTDSQSGESS 319
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: TC32B_BRANA (Short-chain dehydrogenase TIC 32 B, chloroplastic OS=Brassica napus OX=3708 GN=TIC32B PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 2.013e-63 Identity = 98/151 (64.90%), Postives = 115/151 (76.16%), Query Frame = 0 Query: 25 LDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
++LSSIA + + F +N P YS+KKAYGQSKLAN+LH+N LSR+ QEEGVNIT NSVHPGLI TNLF+HS + M LK SFFLWKN+PQGAATTCYVALHP+LKG+TGKYF DCN PS A D TLA KLWDFS K+++
Sbjct: 170 VNLSSIAHTYTYTEGIMFDYINDPDR---YSEKKAYGQSKLANLLHSNALSRKLQEEGVNITINSVHPGLITTNLFRHSGLGMAVLKAMSFFLWKNIPQGAATTCYVALHPDLKGVTGKYFTDCNVTTPSNFAIDTTLADKLWDFSIKLVD 317 HSP 2 Score: 60.8474 bits (146), Expect = 3.829e-10 Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 3 AANEAKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 51
AAN++K++IL+ AR+D L+LDLSSI S++ F F+ALN+PLNILI
Sbjct: 69 AANDSKEMILQMYPNARIDCLQLDLSSIKSVRSFIHQFLALNVPLNILI 117
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: TC32A_BRANA (Short-chain dehydrogenase TIC 32 A, chloroplastic OS=Brassica napus OX=3708 GN=TIC32A PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.129e-62 Identity = 97/150 (64.67%), Postives = 113/150 (75.33%), Query Frame = 0 Query: 25 LDLSSIASIKDFAQN--FIALNLPLNILIYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMI 172
++LSSIA + + F +N P YS+KKAYGQSKLAN+LH+N LSR+ QEEGVNIT NSVHPGLI TNLF+HS + M LK SFFLWKN+PQGAATTCYVALHP+LK +TGKYF DCN PS A D TLA KLWDFS K++
Sbjct: 170 VNLSSIAHTYTYTEGIMFDYINDPDR---YSEKKAYGQSKLANLLHSNALSRKLQEEGVNITINSVHPGLITTNLFRHSGLGMAVLKAMSFFLWKNIPQGAATTCYVALHPDLKDVTGKYFADCNVTTPSNFAIDTTLADKLWDFSIKLV 316 HSP 2 Score: 60.8474 bits (146), Expect = 4.020e-10 Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 3 AANEAKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFIALNLPLNILI 51
AAN++K++IL+ AR+D L+LDLSSI S++ F F+ALN+PLNILI
Sbjct: 69 AANDSKEMILQMYPNARIDCLQLDLSSIKSVRSFIHQFLALNVPLNILI 117
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.276e-44 Identity = 67/121 (55.37%), Postives = 91/121 (75.21%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMI 172
Y++ +AYGQSKLAN+LHAN+L++ +E+GVNITANS+HPG I+TNLF+H++ V + + KNV QGAATTCYVALHP +KG++G+YF D N + +D LAKKLWDFS ++
Sbjct: 193 YNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFRHNSAVNGLINVIGKLVLKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGKDVDLAKKLWDFSINLV 313
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.085e-41 Identity = 68/130 (52.31%), Postives = 95/130 (73.08%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKH-SAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMINPASKTSA 180
YS +AYGQSKL N+LHANEL+++ +E+GVNITANS+HPG IMTNL ++ + + + + ++ K+VPQGAATTCYVAL+P + G++G+YF D N P L +D LAKK+WDFS K+ + S S+
Sbjct: 192 YSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWDFSTKLTDSQSGESS 321
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus OX=10090 GN=Rdh14 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.077e-25 Identity = 51/125 (40.80%), Postives = 75/125 (60.00%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLW---KNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
Y+ Y +SKLANIL EL+RR EG N+T N +HPG++ TNL +H + + F+ W K +GA T+ Y+A P+++G++G+YF DC E A DE++A+KLWD S M+
Sbjct: 209 YNKSFCYSRSKLANILFTRELARRL--EGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVG 331
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens OX=9606 GN=RDH14 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.012e-25 Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLW---KNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
Y+ Y +SKLANIL EL+RR EG N+T N +HPG++ TNL +H + + F+ W K +GA T+ Y+A P ++G++G+YF DC E A DE++A+KLWD S M+
Sbjct: 211 YNKSFCYSRSKLANILFTRELARRL--EGTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVG 333
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: RDH14_BOVIN (Retinol dehydrogenase 14 OS=Bos taurus OX=9913 GN=RDH14 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 9.928e-25 Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLW---KNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
Y+ Y +SKLANIL EL+RR EG ++T N +HPG++ TNL +H + + F+ W K +GA T Y+A P ++G++G+YF DC E A DE++A+KLWD S M+
Sbjct: 211 YNKSFCYSRSKLANILFTRELARRL--EGTSVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPEEGAQTAVYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVG 333
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 3.107e-23 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
Y+ AY SKLANIL EL+RR + GV T SVHPG + + L +HS+ + FSFF+ K QGA T+ + AL L+ L+G +F DC+ SA AR+ET+A++LWD S ++
Sbjct: 196 YNAGLAYCHSKLANILFTQELARRLKGSGV--TTYSVHPGTVQSELVRHSSFMRWMWWLFSFFI-KTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLG 314
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus OX=10090 GN=Rdh12 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 5.982e-23 Identity = 48/122 (39.34%), Postives = 79/122 (64.75%), Query Frame = 0 Query: 52 YSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
Y AYG SKLAN+L EL++R Q G +TA +VHPG++++ + ++S ++ + FS F +K+ QGA T+ + AL +L+ L+GKYF DC M S+ AR++ A++LW+ S +++
Sbjct: 194 YCSAFAYGHSKLANLLFTRELAKRLQ--GTGVTAYAVHPGVVLSEITRNSYLLCLLWRLFSPF-FKSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARNKKTAERLWNVSCELLG 312
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus OX=10090 GN=Wwox PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.173e-21 Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 0 Query: 57 AYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGLTGKYFLDCNEMPPSALARDETLAKKLWDFSNKMIN 173
AY +SKL NIL +NEL RR GV T+N+VHPG +M + ++ V + L + K++ QGAATT Y A+ P L+GL G YF +C PS A+ E A+ LW+ S ++I
Sbjct: 292 AYNRSKLCNILFSNELHRRLSPRGV--TSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCAVAPELEGLGGMYFNNCCRCLPSEEAQSEETARALWELSERLIQ 406 The following BLAST results are available for this feature:
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of mi_v1.0.primary_g18110.t1 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs Araport11) Total hits: 10 Position : 0 Zoom : x 1
BLAST of mi_v1.0.primary_g18110.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-19 (Blastp of Citrus inodora CRC3784 v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus inodora CRC3784 v1.0 v1.0 proteins
Date Performed: 2024-01-19 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >mi_v1.0.primary_g18110.t1-ucr_v1 ID=mi_v1.0.primary_g18110.t1-ucr_v1; Name=mi_v1.0.primary_g18110.t1; organism=Citrus inodora; type=mRNA; length=543bpback to top protein sequence of mi_v1.0.primary_g18110.t1-ucr_v1 >mi_v1.0.primary_g18110.t1-ucr_v1 ID=mi_v1.0.primary_g18110.t1-ucr_v1; Name=mi_v1.0.primary_g18110.t1-ucr_v1; organism=Citrus inodora; type=polypeptide; length=180bpback to top mRNA from alignment at Pri_Scaffold_6:14574901..14576363+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1463bp; location=Sequence derived from: Pri_Scaffold_6:14574901..14576363+ (Citrus inodoraback to top Coding sequence (CDS) from alignment at Pri_Scaffold_6:14574901..14576363+ >mi_v1.0.primary_g18110.t1-ucr_v1 ID=mi_v1.0.primary_g18110.t1-ucr_v1; Name=mi_v1.0.primary_g18110.t1; organism=Citrus inodora; type=CDS; length=543bp; location=Sequence derived from: Pri_Scaffold_6:14574901..14576363+ (Citrus inodoraback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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