NM_gene26187.t1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A5N6Q161|A0A5N6Q161_9ASTR (CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_01269 PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 8.317e-53 Identity = 91/189 (48.15%), Postives = 134/189 (70.90%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 M + K +LEKF GKNDF +W++KM+ALL+ QG+ DA+ +++ ++ + +E ++ +KA +ILSL D V+REV+KE + G+W +LESLYMTK L R Y+KKR++TF M G +L+ H D+FNK+ LE ID L+DE +A++ ++S SFEHFVD LMYGR TLT+++V AALN++ L Sbjct: 1 MVSTKFELEKFDGKNDFGLWRLKMKALLVHQGVVDALAGEARL-----PATMSDKEKKDVLEKAHSAIILSLGDRVLREVSKETSAAGIWTRLESLYMTKSLANRLYLKKRLYTFHMTSGKTLEDHTDDFNKLILDLENIDVSLEDEDQAIIFLTSLPHSFEHFVDTLMYGRDTLTMEEVLAALNSKEL 184
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A251V331|A0A251V331_HELAN (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0128481 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 2.318e-52 Identity = 96/189 (50.79%), Postives = 135/189 (71.43%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 M + K +LEKF GKNDF +W++KM ALL+ QG+ DA+ +K+ + T +E +I +KA +ILSL D V+REV+KE + G+WAKLESLYMTK L R Y+KKR++TF++ G SL+ H DEFNKV LE ID +DDE KA++ ++S ++FEHFVD LMYGR +L++++V AALN++ L Sbjct: 1 MVSTKFELEKFDGKNDFGLWRVKMRALLVHQGIVDALAGEAKL-----PAGLTDKEKKDILEKAHSAIILSLGDRVLREVSKETSAAGIWAKLESLYMTKSLANRLYLKKRLYTFQLASGKSLEDHTDEFNKVILDLENIDVSIDDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSMEEVLAALNSKEL 184
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A151TC89|A0A151TC89_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019262 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 7.208e-51 Identity = 89/190 (46.84%), Postives = 129/190 (67.89%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGR-QTLTLDDVKAALNTRGL 189 M K D+EKF +NDF +W+IKMEA+LI QG +AI+ K+ SS T +E + +KAR +IL L D +REVA+EKT +W KLESLYMTK L R +K+R+++F+M E S+ + EFNK+ D LE I+ L+DE KALLL++S +++EHF DA++YG+ Q +TLD+V+ ++ T+ L Sbjct: 1 MGNTKYDIEKFSSENDFGLWRIKMEAILIQQGCAEAIKGDEKM-----VSSLTQKEKTNMIEKARSAIILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLYSFKMTETKSIVDQLAEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRTKEL 185
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A151TCU2|A0A151TCU2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019424 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.334e-50 Identity = 82/189 (43.39%), Postives = 132/189 (69.84%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 M + K ++EKF G+NDF +W++KM ALL+ QGL DA+ +K E ++ EE ++ +KA +ILSL D V+R+V+KEKT G+W+KLESLYMTK L R Y+K+ +++F+M E + + +D FNK+ LE ID +DDE +ALLL+ S +++ HF + +++GR ++++D+V+AA+N++ L Sbjct: 1 MGSAKYEVEKFTGQNDFGLWRLKMRALLVHQGLVDALAGEAKAE-----NATVDEERKKMQEKAHSAIILSLGDKVLRQVSKEKTAAGIWSKLESLYMTKSLVNRLYLKQSLYSFKMNEDKPVGEQLDHFNKLILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDEVQAAINSKEL 184
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A151SF29|A0A151SF29_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_024760 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.291e-49 Identity = 82/189 (43.39%), Postives = 132/189 (69.84%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 M + K ++EKF G+NDF +W++KM ALL+ QGL DA+ +K E ++ EE ++ +KA +ILSL D V+R+V+KEKT G+W+KLESLYMTK L R Y+K+ +++F M E + + +D+FNK+ LE ID +DDE +ALLL+ S +++ HF + +++GR ++++D+V+AA+N++ L Sbjct: 1 MGSTKYEVEKFTGQNDFGLWRLKMRALLVHQGLVDALAGEAKAE-----NATVDEERKKMQEKAHSAIILSLGDKVLRQVSKEKTAAGIWSKLESLYMTKSLVNRLYLKQSLYSFNMNENKPVGEQLDQFNKLILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDEVQAAINSKEL 184
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A5N6MUI5|A0A5N6MUI5_9ASTR (CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_26619 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 2.487e-48 Identity = 87/189 (46.03%), Postives = 135/189 (71.43%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 + + K ++EKF G+NDF++W++KM ALL+ QG+ DA++ +E ++ + +E E+ +KA +ILSL D V+REV+KE+T +W KLESLYMTK L R Y+KKR++T++M L+ HIDEFNK+ LE ID +DDE +A++ +S+ S+EHFVD LM+GR++LT+++V AA+N++ L Sbjct: 294 VTSTKFEIEKFDGRNDFSLWRVKMRALLVHQGVVDALKG-----AEELPTTMSDKEKKEVMEKAHSAIILSLGDRVLREVSKEETAAKVWLKLESLYMTKSLANRLYLKKRLYTYQMNSVKPLEDHIDEFNKILLDLENIDVEIDDEDRAIIFLSALPSSYEHFVDTLMFGRESLTMEEVIAAMNSKEL 477
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A803NT26|A0A803NT26_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.784e-48 Identity = 86/190 (45.26%), Postives = 130/190 (68.42%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISS-PFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 M K D+EKF GKNDF++W++KM ALL+ QG+ DAI K+ KT E +E+ +KA LILSL D V+REV+KE T GLW KLESLYMTK L R ++K+++++F+M G S++ H+D FNK+ LE D ++ E +A+++++S P +E+FVD +M+GR +LTL+++ +AL ++ L Sbjct: 1 MGNAKFDIEKFDGKNDFSLWRVKMRALLVQQGIQDAILGDDKIR------DKTDAEKSELMEKAHSALILSLGDKVLREVSKETTTAGLWKKLESLYMTKSLANRLFLKQKLYSFKMQPGKSVEDHMDYFNKIILDLENCDIKIESEDQAIIVLNSLPSDEYENFVDTMMFGRDSLTLEEIHSALMSKEL 184
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A151TCD0|A0A151TCD0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019277 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.478e-47 Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGR-QTLTLDDVKAALNTRGL 189 M K D+EKF G+NDF +W+IKMEA+LI QG +AI+ K+ SSS T +E + +KAR +IL L D +REVA+EKT +W KLESLYMTK L R +K+R+++F+M E S+ + EFNK+ D LE I+ L+DE KALLL++S +++EHF DA++YG+ Q +TLD+V+ ++ T+ L Sbjct: 1 MGNTKYDIEKFSGENDFGLWRIKMEAILIQQGCAEAIKGEEKM-----SSSLTQKEKTNMIEKARSAIILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLYSFKMTETKSIVDQLAEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRTKEL 185
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A061EWE5|A0A061EWE5_THECC (CCHC-type domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_024518 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.199e-47 Identity = 84/189 (44.44%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 2 ATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEA-SSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAALNTRGL 189 ++ K ++EKF+G+NDF++W++KM ALL+ QGL A++ GKE S+ + E ++ +KA ++L+L D V+REV E++ +W KLES+Y+TK LT R Y+K+R++T +M EG S+ HIDEFN+V L+ ID ++DE AL+L+ S+E+FVD ++YGR TLT +DV+A LN++ L Sbjct: 4 SSTKYEIEKFNGRNDFSLWRVKMCALLVQQGLLKALK------GKEHLPSNLSDSEKDDLMEKAHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDVRAYLNSKEL 186
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Match: A0A803Q6S7|A0A803Q6S7_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 7.272e-47 Identity = 86/188 (45.74%), Postives = 133/188 (70.74%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISS-PFKSFEHFVDALMYGRQTLTLDDVKAALNTR 187 M K DLEKF GKNDF +W++KM A+L+ QGL DA+ SK+ S++ + +E EI +KA +ILSL D V+REV+KE T G+W KLE+LYM K L R ++K+++++FRM+ G S++ H+D+FNK+ LE I ++DE +A+++++S P + +EHFVD +MYG+ +LTL++V AL ++ Sbjct: 1 MGNAKFDLEKFTGKNDFGLWRVKMRAMLVQQGLQDALLGESKL-----SATLSEKEKTEILEKAHSAIILSLGDRVLREVSKETTAAGMWLKLENLYMVKSLANRLFLKQKLYSFRMIPGKSVEDHLDDFNKIVLDLENIGIKIEDEDQAIIVLNSLPSEQYEHFVDTMMYGKSSLTLEEVVTALMSK 183
BLAST of NM_gene26187.t1 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.011e-29 Identity = 62/184 (33.70%), Postives = 111/184 (60.33%), Query Frame = 0 Query: 1 MATPKIDLEKFHGKNDFNMWKIKMEALLITQGLGDAIEPVSKVEGKEASSSKTPEELAEINKKARKFLILSLKDLVIREVAKEKTVVGLWAKLESLYMTKPLTKRFYIKKRMFTFRMVEGLSLKQHIDEFNKVCDILETIDKGLDDEGKALLLISSPFKSFEHFVDALMYGRQTLTLDDVKAAL 184 M+ K ++ KF+G N F+ W+ +M LLI QGL ++ V+ K+ + K E+ A+++++A + L L D V+ + E T G+W +LESLYM+K LT + Y+KK+++ M EG + H++ FN + L + +++E KA+LL++S S+++ +++G+ T+ L DV +AL Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLD----VDSKKPDTMKA-EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSAL 179 The following BLAST results are available for this feature:
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Analysis Date: 2023-04-28 (Blastp of Citrus australis v1.0 (UQ) proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of NM_gene26187.t1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-04 (Blastp of Citrus limon Eureka v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
BLAST of NM_gene26187.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-04 (Blastp of Citrus limon Eureka v1.0 proteins vs UniProt Swissprot ) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus limon cv. Eureka v1.0 proteins
Date Performed: 2023-05-01 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >NM_gene26187.t1_cle_v1 ID=NM_gene26187.t1_cle_v1; Name=NM_gene26187.t1; organism=Citrus limon; type=mRNA; length=570bpback to top protein sequence of NM_gene26187.t1_cle_v1 >NM_gene26187.t1_cle_v1 ID=NM_gene26187.t1_cle_v1; Name=NM_gene26187.t1_cle_v1; organism=Citrus limon; type=polypeptide; length=189bpback to top mRNA from alignment at Chr04B:14076657..14077226- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=570bp; location=Sequence derived from: Chr04B:14076657..14077226- (Citrus limonback to top Coding sequence (CDS) from alignment at Chr04B:14076657..14077226- >NM_gene26187.t1_cle_v1 ID=NM_gene26187.t1_cle_v1; Name=NM_gene26187.t1; organism=Citrus limon; type=CDS; length=570bp; location=Sequence derived from: Chr04B:14076657..14077226- (Citrus limonback to top |