EVM_prediction_chr2.1_tiancheng.2286
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. Araport11
Match: | (Symbols: AtCML5, MSS3 | multicopy suppressors of snf4 deficiency in yeast 3 | chr2:17991308-17991955 REVERSE LENGTH=215) HSP 1 Score: 45.8246 bits (107), Expect = 4.402e-7 Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0 Query: 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKEL 77
+K + + +DK+GDGR++K+EL + N G++ + +H D+N DG + DE + L
Sbjct: 65 ELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFESL 125
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A2H5NHG1|A0A2H5NHG1_CITUN (EF-hand domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_044840 PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.659e-59 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK
Sbjct: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A067GX94|A0A067GX94_CITSI (EF-hand domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036018mg PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 3.834e-58 Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
MPFYVPRNG+I+LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK
Sbjct: 1 MPFYVPRNGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: V4V7E9|V4V7E9_CITCL (EF-hand domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003536mg PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 7.347e-45 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 Query: 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK
Sbjct: 1 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 72
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A8J4RE12|A0A8J4RE12_9ROSI (EF-hand domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_004896 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.431e-34 Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR+ + LSE+ +K LLKRYD +GDG+LSK EL+AAFR+ GLHFSG+RA +AL HAD+N DG++ DEMKELV YA +WGFT+
Sbjct: 1 MPVWSPRSTSYPLSEEQLKGLLKRYDTNGDGKLSKNELKAAFRSLGLHFSGWRAGQALRHADANGDGYVSEDEMKELVKYAMKWGFTI 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A7N2QY84|A0A7N2QY84_QUELO (EF-hand domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.431e-34 Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR+ + LSE+ +K LLKRYD +GDG+LSK EL+AAFR+ GLHFSG+RA +AL HAD+N DG++ DEMKELV YA +WGFT+
Sbjct: 1 MPVWSPRSTSYPLSEEQLKGLLKRYDTNGDGKLSKNELKAAFRSLGLHFSGWRAGQALRHADANGDGYVSEDEMKELVKYAMKWGFTI 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A2R6RN05|A0A2R6RN05_ACTCC (Calcium-binding protein CML10 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04715 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.356e-33 Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR+ N+ LSE+ +K LLKRYD +GDGRLS++EL+AAFR+ GL +SG+RA RA+ HAD+N DGFI +EM ELV YA RWGF++
Sbjct: 1 MPIWNPRSVNLPLSEEQLKGLLKRYDTNGDGRLSRQELKAAFRSLGLRWSGWRAARAMRHADANGDGFISQEEMDELVKYATRWGFSI 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A7J7HRZ1|A0A7J7HRZ1_CAMSI (EF-hand domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_008488 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.767e-33 Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR+ N+ L+ED +K LLKRYDK+GDG+LSKKEL+ AFR+ GL FSG+RA RAL HAD+N DG+I ++E+ ELV YA RWGF++
Sbjct: 1 MPIWTPRSVNVPLNEDQIKGLLKRYDKNGDGKLSKKELKDAFRDLGLKFSGWRAGRALRHADANGDGYISDEELNELVKYARRWGFSL 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A2N9FZV9|A0A2N9FZV9_FAGSY (EF-hand domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20246 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.156e-33 Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR+ LSE+ +K LLKRYD +GDGRLSK EL+AAFR+ GLHFSG+RA +AL H+D+N DG+I DEMKEL+ Y +WGFT+
Sbjct: 1 MPVWSPRSTGYPLSEEQLKGLLKRYDTNGDGRLSKNELKAAFRSLGLHFSGWRAGQALRHSDTNGDGYISEDEMKELLKYCMKWGFTI 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A7J0DED7|A0A7J0DED7_9ERIC (EF-hand domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0027180 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.245e-32 Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR N+ LSE+ +K LLKRYD +GDGRLS+KEL+ AFR+ GL +SG+RA +A+ HAD+N DGFI +EM ELV YA RWG ++
Sbjct: 1 MPIWNPRRVNLPLSEEQLKGLLKRYDTNGDGRLSRKELKVAFRSLGLRWSGWRAAQAIRHADANGDGFISKEEMDELVKYATRWGISI 88
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Match: A0A2R6Q025|A0A2R6Q025_ACTCC (Calcium-binding protein CML10 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23733 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.737e-31 Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88
MP + PR N LSE+ +K LLKRYD +GDGRLS+KEL+ AFR+ GL +SG+RA +A+ HAD+N DGFI +EM ELV YA RWG ++
Sbjct: 1 MPIWNPRRVNWPLSEEQLKGLLKRYDTNGDGRLSRKELKVAFRSLGLRWSGWRAAQAIRHADANGDGFISKEEMDELVKYATRWGISI 88 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2286 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins
Date Performed: 2023-08-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.2286_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2286_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2286; organism=Citrus sinensis; type=mRNA; length=270bpback to top protein sequence of evm.model.chr2.1_tiancheng.2286_cs-GNU_v1 >evm.model.chr2.1_tiancheng.2286_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2286_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.2286_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=90bpback to top mRNA from alignment at chr2.1_tiancheng:34746211..34746680+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=470bp; location=Sequence derived from: chr2.1_tiancheng:34746211..34746680+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:34746211..34746680+ >evm.model.chr2.1_tiancheng.2286_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2286_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2286; organism=Citrus sinensis; type=CDS; length=270bp; location=Sequence derived from: chr2.1_tiancheng:34746211..34746680+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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