EVM_prediction_chr2.1_tiancheng.2274 | Citrus Genome Database

Transcript Overview


Name	EVM_prediction_chr2.1_tiancheng.2274
Unique Name	evm.model.chr2.1_tiancheng.2274_cs-GNU_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	735

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Newhall v1.0 genome	2023-08-01
InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins	2023-08-08
Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11	2023-08-23
Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot	2023-08-23
Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL	2023-08-23

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucsnL156	Citrus australis genome v1.0 (UQ)	Citrus australis
caucsnL516	Citrus australis genome v1.0 (UQ)	Citrus australis
cccsnL161	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccsnL346	Citrus clementina genome v1.0 (JGI)	Citrus clementina
clecsnL0034	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjcsnL264	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
clecsnL0458	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjcsnL683	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
clecsnL0549	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsnL0927	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsnL0976	Citrus limon cv. Eureka genome v1.0	Citrus limon
cscsnL0346	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csncsnL137	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csncsnL177	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csncsnR513	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csncsnR528	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbR268	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csndvaR264	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csnfhsR457	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csnfhsR475	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csnfhsR491	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csnzkR609	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csnzkR621	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csnzkR628	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Orthologs


Gene/Transcript	Assembly	Species
Fh8g04890.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
NM_gene21092.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Fh3g34250.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
NM_gene52120.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Ciclev10029147m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
CMJ_chr3_024000.1	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
Pt8g004330.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
NM_gene55352.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
gene-KPL70_016410-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
EVM_prediction_chr6.1_tiancheng.2029	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
EVM_prediction_chr6.2_youzi.2117	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
EVM_prediction_chr2.2_youzi.2404	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
gene-KPL71_016641-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EVM_prediction_chr2.1_tiancheng.2274	evm.TU.chr2.1_tiancheng.2274_cs-GNU_v1	Citrus sinensis	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.chr2.1_tiancheng.2274.utr5p1_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.utr5p1_cs-GNU_v1	Citrus sinensis	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.chr2.1_tiancheng.2274.exon1_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.exon1_cs-GNU_v1	Citrus sinensis	exon
evm.model.chr2.1_tiancheng.2274.exon2_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.exon2_cs-GNU_v1	Citrus sinensis	exon
evm.model.chr2.1_tiancheng.2274.exon3_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.exon3_cs-GNU_v1	Citrus sinensis	exon
evm.model.chr2.1_tiancheng.2274.exon4_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.exon4_cs-GNU_v1	Citrus sinensis	exon
evm.model.chr2.1_tiancheng.2274.exon5_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.exon5_cs-GNU_v1	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	Citrus sinensis	CDS
cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1_2	Citrus sinensis	CDS
cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1_3	Citrus sinensis	CDS
cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1_4	Citrus sinensis	CDS
cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	cds.evm.model.chr2.1_tiancheng.2274_cs-GNU_v1_5	Citrus sinensis	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.chr2.1_tiancheng.2274.utr3p1_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274.utr3p1_cs-GNU_v1	Citrus sinensis	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	Citrus sinensis	polypeptide
evm.model.chr2.1_tiancheng.2274_cs-GNU_v1	evm.model.chr2.1_tiancheng.2274_cs-GNU_v1-protein	Citrus sinensis	polypeptide

Homology

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
Match: | (Symbols: COR27 | cold regulated gene 27 | chr5:17198366-17199712 REVERSE LENGTH=246)

HSP 1 Score: 126.716 bits (317), Expect = 2.661e-35
Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = 0

Query:   37 TEWTDEKHSLYLKSMEASFVNQLY-SAADIPARSDVTSSRKMHCA---TSGQFKILRRGCWQKLYLERPEFQPN--RTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHD-LSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVP 223
            TEWT+EKHSLYLKSMEASFV+QLY S   +    +V+ S +       +  QFK+L  G WQK+ +++PE + N     NSH    +PWI+H+K   K +   +  P     +++V + +GKK +    +  S    +SH   HD +S   AEVSDQNF++E  KGE      SSKKMKT     SS  DQVVP
Sbjct:   46 TEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPE----NQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG----SSKKMKTVMMSESSSTDQVVP 231

[Close]

Query:   37 TEWTDEKHSLYLKSMEASFVNQLY-SAADIPARSDVTSSRKMHCA---TSGQFKILRRGCWQKLYLERPEFQPN--RTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHD-LSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVP 223
            TEWT+EKHSLYLKSMEASFV+QLY S   +    +V+ S +       +  QFK+L  G WQK+ +++PE + N     NSH    +PWI+H+K   K +   +  P     +++V + +GKK +    +  S    +SH   HD +S   AEVSDQNF++E  KGE      SSKKMKT     SS  DQVVP
Sbjct:   46 TEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPE----NQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG----SSKKMKTVMMSESSSTDQVVP 231

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
Match: | (Symbols: COR27 | cold regulated gene 27 | chr5:17198366-17199712 REVERSE LENGTH=245)

HSP 1 Score: 125.561 bits (314), Expect = 6.850e-35
Identity = 80/193 (41.45%), Postives = 108/193 (55.96%), Query Frame = 0

Query:   37 TEWTDEKHSLYLKSMEASFVNQLY-SAADIPARSDVTSSRKMHCA---TSGQFKILRRGCWQKLYLERPEFQPN--RTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVP 223
            TEWT+EKHSLYLKSMEASFV+QLY S   +    +V+ S +       +  QFK+L  G WQK+ +++PE + N     NSH    +PWI+H+K   K +   +  P     +++V + +GKK +    +  S    +SH   HD      EVSDQNF++E  KGE      SSKKMKT     SS  DQVVP
Sbjct:   46 TEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPE----NQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKGENG----SSKKMKTVMMSESSSTDQVVP 230

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
Match: | (Symbols: COR28, HUP41 | COLD-REGULATED GENE 28, HYPOXIA RESPONSE UNKNOWN PROTEIN 41 | chr4:16283047-16284946 REVERSE LENGTH=218)

HSP 1 Score: 51.9878 bits (123), Expect = 7.063e-8
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 0

Query:    8 ENQTTPRTSDQLGPDKSGDKEPWSLDSRVTE---WTDEKHSLYLKSMEASFVNQLYSAAD-----IPARSDVTSSRKMHCATSGQFKILRRGCWQKL 96
            E+Q+    S+ L    + +      DS++ E   WT+EKH+ YL  +E+SFV QLYS        +    DV S+      ++ QF +L+ GCWQK+
Sbjct:   24 ESQSESTLSNSLDSGVTAETSRSDADSKLDECTAWTNEKHNSYLDYLESSFVRQLYSLLGGGTQRLSRTRDVQSNSH---KSADQFTVLQNGCWQKV 117

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
Match: | (Symbols: COR28, HUP41 | COLD-REGULATED GENE 28, HYPOXIA RESPONSE UNKNOWN PROTEIN 41 | chr4:16282873-16284946 REVERSE LENGTH=232)

HSP 1 Score: 51.9878 bits (123), Expect = 8.269e-8
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 0

Query:    8 ENQTTPRTSDQLGPDKSGDKEPWSLDSRVTE---WTDEKHSLYLKSMEASFVNQLYSAAD-----IPARSDVTSSRKMHCATSGQFKILRRGCWQKL 96
            E+Q+    S+ L    + +      DS++ E   WT+EKH+ YL  +E+SFV QLYS        +    DV S+      ++ QF +L+ GCWQK+
Sbjct:   24 ESQSESTLSNSLDSGVTAETSRSDADSKLDECTAWTNEKHNSYLDYLESSFVRQLYSLLGGGTQRLSRTRDVQSNSH---KSADQFTVLQNGCWQKV 117

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy Swiss-Prot
Match: COR27_ARATH (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.560e-34
Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = 0

Query:   37 TEWTDEKHSLYLKSMEASFVNQLY-SAADIPARSDVTSSRKMHCA---TSGQFKILRRGCWQKLYLERPEFQPN--RTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHD-LSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVP 223
            TEWT+EKHSLYLKSMEASFV+QLY S   +    +V+ S +       +  QFK+L  G WQK+ +++PE + N     NSH    +PWI+H+K   K +   +  P     +++V + +GKK +    +  S    +SH   HD +S   AEVSDQNF++E  KGE      SSKKMKT     SS  DQVVP
Sbjct:   46 TEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPE----NQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG----SSKKMKTVMMSESSSTDQVVP 231

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy Swiss-Prot
Match: COR28_ARATH (Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 6.901e-7
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 0

Query:    8 ENQTTPRTSDQLGPDKSGDKEPWSLDSRVTE---WTDEKHSLYLKSMEASFVNQLYSAAD-----IPARSDVTSSRKMHCATSGQFKILRRGCWQKL 96
            E+Q+    S+ L    + +      DS++ E   WT+EKH+ YL  +E+SFV QLYS        +    DV S+      ++ QF +L+ GCWQK+
Sbjct:   24 ESQSESTLSNSLDSGVTAETSRSDADSKLDECTAWTNEKHNSYLDYLESSFVRQLYSLLGGGTQRLSRTRDVQSNSH---KSADQFTVLQNGCWQKV 117

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A067H8V4|A0A067H8V4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026015mg PE=4 SV=1)

HSP 1 Score: 507.679 bits (1306), Expect = 0.000e+0
Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A2H5NH79|A0A2H5NH79_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044990 PE=4 SV=1)

HSP 1 Score: 505.753 bits (1301), Expect = 0.000e+0
Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            MDGLGRNENQTTPR SDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    1 MDGLGRNENQTTPRASDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A2H5NH63|A0A2H5NH63_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044990 PE=4 SV=1)

HSP 1 Score: 496.893 bits (1278), Expect = 1.835e-177
Identity = 238/240 (99.17%), Postives = 238/240 (99.17%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV 240
            MDGLGRNENQTTPR SDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV
Sbjct:    1 MDGLGRNENQTTPRASDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV 240

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A067GX21|A0A067GX21_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026015mg PE=4 SV=1)

HSP 1 Score: 476.093 bits (1224), Expect = 2.110e-169
Identity = 233/244 (95.49%), Postives = 233/244 (95.49%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQ          KLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQ----------KLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 234

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A2H5NHZ8|A0A2H5NHZ8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_045000 PE=4 SV=1)

HSP 1 Score: 440.269 bits (1131), Expect = 1.684e-155
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0

Query:   33 DSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            DSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    7 DSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 218

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A067GWR5|A0A067GWR5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026015mg PE=4 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 1.054e-139
Identity = 200/244 (81.97%), Postives = 200/244 (81.97%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP                                           EVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP-------------------------------------------EVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 201

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: V4T487|V4T487_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002531mg PE=4 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 3.560e-138
Identity = 198/244 (81.15%), Postives = 198/244 (81.15%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 244
            MDGLG NENQTTPR SDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP                                           EVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR
Sbjct:    1 MDGLGSNENQTTPRASDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP-------------------------------------------EVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR 201

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A2H5NH68|A0A2H5NH68_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044990 PE=4 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.865e-135
Identity = 195/240 (81.25%), Postives = 195/240 (81.25%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASRTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV 240
            MDGLGRNENQTTPR SDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP                                           EVSDQNFIDEESKGEKAS TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV
Sbjct:    1 MDGLGRNENQTTPRASDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPP-------------------------------------------EVSDQNFIDEESKGEKASCTCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCV 197

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: A0A067H8W0|A0A067H8W0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026015mg PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 4.895e-134
Identity = 182/189 (96.30%), Postives = 182/189 (96.30%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFI 189
            MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSA       I
Sbjct:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAGADSYTLI 189

[Close]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Match: V4T919|V4T919_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002531mg PE=4 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 2.427e-132
Identity = 180/189 (95.24%), Postives = 180/189 (95.24%), Query Frame = 0

Query:    1 MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFI 189
            MDGLG NENQTTPR SDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSA       I
Sbjct:    1 MDGLGSNENQTTPRASDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKSMEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLERPEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINISGKKAVSYEAATRSEHLDASHLCRHDLSGSSAGADSYTLI 189

The following BLAST results are available for this feature:

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy Swiss-Prot
BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
\|	2.661e-35	42.27	Symbols: COR27 \| cold regulated gene 27 \| chr5:171...	[more]
\|	2.661e-35	42.27	Symbols: COR27 \| cold regulated gene 27 \| chr5:171...	[more]
\|	6.850e-35	41.45	Symbols: COR27 \| cold regulated gene 27 \| chr5:171...	[more]
\|	7.063e-8	34.02	Symbols: COR28, HUP41 \| COLD-REGULATED GENE 28, HY...	[more]
\|	8.269e-8	34.02	Symbols: COR28, HUP41 \| COLD-REGULATED GENE 28, HY...	[more]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy Swiss-Prot
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
COR27_ARATH	2.560e-34	42.27	Cold-regulated protein 27 OS=Arabidopsis thaliana ...	[more]
COR28_ARATH	6.901e-7	34.02	Cold-regulated protein 28 OS=Arabidopsis thaliana ...	[more]

BLAST of EVM_prediction_chr2.1_tiancheng.2274 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
A0A067H8V4\|A0A067H8V4_CITSI	0.000e+0	99.59	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A2H5NH79\|A0A2H5NH79_CITUN	0.000e+0	99.18	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A2H5NH63\|A0A2H5NH63_CITUN	1.835e-177	99.17	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067GX21\|A0A067GX21_CITSI	2.110e-169	95.49	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A2H5NHZ8\|A0A2H5NHZ8_CITUN	1.684e-155	99.53	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067GWR5\|A0A067GWR5_CITSI	1.054e-139	81.97	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4T487\|V4T487_CITCL	3.560e-138	81.15	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A2H5NH68\|A0A2H5NH68_CITUN	1.865e-135	81.25	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067H8W0\|A0A067H8W0_CITSI	4.895e-134	96.30	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4T919\|V4T919_CITCL	2.427e-132	95.24	Uncharacterized protein OS=Citrus clementina OX=85...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins
Date Performed: 2023-08-08

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 20..225

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2.1_tiancheng:34675286..34677826+
coding sequence from alignment at chr2.1_tiancheng:34675286..34677826+

mRNA sequence

>evm.model.chr2.1_tiancheng.2274_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2274_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2274; organism=Citrus sinensis; type=mRNA; length=735bp
ATGGATGGTTTAGGGAGAAATGAAAATCAGACGACTCCTCGTACATCTGA
TCAATTGGGTCCTGACAAATCAGGCGATAAAGAGCCTTGGAGCCTGGATT
CACGAGTAACAGAATGGACAGATGAGAAGCATAGTTTGTACCTTAAATCC
ATGGAAGCATCATTTGTTAACCAGTTATATAGTGCTGCGGATATTCCTGC
TCGGAGCGATGTTACATCATCTAGGAAAATGCATTGTGCTACTTCTGGCC
AGTTTAAGATTCTTCGACGTGGTTGCTGGCAGAAGCTCTACTTAGAGAGA
CCTGAATTTCAACCAAATAGGACATGCAATTCTCATGGTCTTTCGGCAAA
TCCGTGGATCCGGCATTTTAAATCTGAATGCAAGCCAAAAACATTTGCGT
CTCCATATCCTCCAGGTATTGCTGGATCAAAAATAGTAATCAATATTAGT
GGGAAGAAGGCAGTGTCCTATGAAGCAGCTACTAGATCTGAACACCTTGA
TGCGTCTCATTTGTGTCGTCATGATTTGTCTGGCAGTAGTGCAGAGGTGT
CGGATCAGAACTTCATTGATGAAGAGAGTAAAGGTGAGAAAGCAAGCCGG
ACGTGTAGCTCAAAAAAGATGAAAACTGAGAAACCTGATGCTTCAAGCCA
TGATGATCAGGTCGTCCCACGCCAGCAAAGCAAGCGTACCATGACAGAAA
ACTGTCCTGAGAAGTGTGTTTTTCCAGCCAGATGA

protein sequence of evm.model.chr2.1_tiancheng.2274_cs-GNU_v1

>evm.model.chr2.1_tiancheng.2274_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2274_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.2274_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=245bp
MDGLGRNENQTTPRTSDQLGPDKSGDKEPWSLDSRVTEWTDEKHSLYLKS
MEASFVNQLYSAADIPARSDVTSSRKMHCATSGQFKILRRGCWQKLYLER
PEFQPNRTCNSHGLSANPWIRHFKSECKPKTFASPYPPGIAGSKIVINIS
GKKAVSYEAATRSEHLDASHLCRHDLSGSSAEVSDQNFIDEESKGEKASR
TCSSKKMKTEKPDASSHDDQVVPRQQSKRTMTENCPEKCVFPAR*

mRNA from alignment at chr2.1_tiancheng:34675286..34677826+

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2541bp; location=Sequence derived from: chr2.1_tiancheng:34675286..34677826+ (Citrus sinensis
CTCTAAAACAGAATTAGAAAAAATAAAATAAAAGAAGGAAAGAACACTCT
TTTTATCTTCTGAATAAAGGGCGGGCTTTTAAAATTGTGTGTTTGCATGG
ATGGTTTAGGGAGAAATGAAAATCAGACGACTCCTCGTACATCTGATCAA
TTGGGTCCTGACAAATCAGGCGATAAAGAGCCTTGGAGCCTGGTATGGTA
TCATATATCTCTTCTTCCTTTGATGTCCTTTACAAGCGCTAATAAAATCA
TGAATCCTGACCAAGCTTTTATGCATAATATTAAGAAAGACCAACAATTT
TGAATATTTTGTCAACTTTCCTTCGTGATATATTTGGTTTCTTTGATGAA
CTAATCGTGATTGAATTGGGGTTACCTGAAGGAATAGGTAAAGTTGCTTG
GTTTATTTTCATAAGGGTTATCAGATTAGGTCAATGACAGTAGTTTGATA
ACGTCACCATGTTAAGGTCCCAAGGCCAGTTTAGTATTGAGGTCTGTCGT
GGGAAAAAAGAAAAGAAAAGAAAAAGTTGTAGTTTTTAAATGAAAATCGG
CAATGTAGGGTAAATGTAATTTTTACACAATAATTGCGATAAAAATAATA
ATATAGGCTTTTCATTATGCTTAGTGTGGAAAATTTTAACTTTAACTTTC
AAATTACAGGAAAAATTTAACTTAACTTTCAAATTACAATACGCGTTTAC
CAAATATTTTAAAATTACGGCTTCTCAACGACACGTTTGAATGGCTTTAA
GCTTTGTTTAGAAGAAAGTAGATAAATAAAAATGCAATTAAGTGCCAAAA
TCGATTTATGATGTTAAACCTTTACATGTATTTCTTAAAAGTGCTTCTTG
CTCCCATGTTCTCAGTTGAAATCTACCTTGTTTGTTTAAGGGTTTCTGAT
CACAATGTTAATTGCATATCAGGATTCACGAGTAACAGAATGGACAGATG
AGAAGCATAGTTTGTACCTTAAATCCATGGAAGCATCATTTGTTAACCAG
TTATATAGTGCTGCGGATATTCCTGCTCGGAGCGATGTTACATCATCTAG
GAAAATGCATTGTGCTACTTCTGGCCAGGTTTGTTTGAACACAACTCTTG
TTTGAAGGACTGTCGACTCTGTTGCTTTTGTACATGTTCTGTGCTTACAA
AAGTGTGGTCTTTGTTATTTTTATTGTTTCTTTCTATCTTTATTCTAGTT
TAAGATTCTTCGACGTGGTTGCTGGCAGAAGCTCTACTTAGAGAGACCTG
AATTTCAACCAAATAGGACATGCAATTCTCATGGTCTTTCGGCAAATCCG
TGGATCCGGCATTTTAAATCTGAATGCAAGCCAAAAACATTTGCGTCTCC
ATATCCTCCAGGTATTGCTGGATCAAAAATAGTAATCAATATTAGTGGGA
AGAAGGCAGTGTCCTATGAAGCAGCTACTAGATCTGAACACCTTGATGCG
TCTCATTTGTGTCGTCATGATTTGTCTGGCAGTAGTGCAGGTGCTGACAG
CTATACTTTAATCTAAGGGCAAATATTTGTTACTTTACATCCATTGCTTC
ACACCTCATTTTTCCTGTATCTTGCTTGTTTAATGTCATCTCATGAGTGA
AGTAAAATTTATCACCGGTTCCACAATGTGAAATTATCGGTTAATCACAT
TAAATGATCCGCATCTTTGATTTATTCTATAGTTTATTTTGGGTTCTGTT
CTCTTCTAATTCGTCAATCATAAAAGTTCTTAGGAGGCTGAAGGTGGCAA
TATGCGTTGATAAATATGGGTGCACAAGAGTTCAGTAATAGATATATCTG
GTATATACTTGAAAGAATAAGATAAAGATTTAGTCATGGGGGATTAAAAA
TTTTCATGAAGCCAACCTCATCTAGTCCAGGGTAAAGTGTGATCGAGTTG
AGTACAGAGTTAGAGGAAGAAGAGCAAGAAATGATTTCATGAGAAATTTT
ATTTTCTACAATAAGATTCGTGTTGCTGTTACAAATTAGAAGGTTCTTTA
ATTCATTGGCAGAGAGGTCATGGGCTATGTTGCATATAGCTTACCAACTC
TCTGACGATGCTTTGGTTTCTTGCAGAGGTGTCGGATCAGAACTTCATTG
ATGAAGAGAGTAAAGGTGAGAAAGCAAGCCGGACGTGTAGCTCAAAAAAG
ATGAAAACTGAGAAACCTGATGCTTCAAGCCATGATGATCAGGTAACATG
TACACTTAATTCATAAGCAGTTTTTGTGAGAGCTAAGAAGTAAGATTATG
ATATTGTCTGGGCGATCTTAGTTTAACATTGTCCATCTTGGTCATGCTCT
TTTAGGTCGTCCCACGCCAGCAAAGCAAGCGTACCATGACAGAAAACTGT
CCTGAGAAGTGTGTTTTTCCAGCCAGATGAGATGAAGAACAAGAATGCAA
ATGGCTTGCTTATCTACTCTTCTTCTAACAAAAGGAGTGCTTGCGGGGGA
CTCTGTGCAGATCAATTATGCTGACTTAACCCAAGATTATAGGAGCATTT
ATGCATTGCGGGGGAGAAATGACTTGCTATTTCCATCTACT

Coding sequence (CDS) from alignment at chr2.1_tiancheng:34675286..34677826+

>evm.model.chr2.1_tiancheng.2274_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2274_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2274; organism=Citrus sinensis; type=CDS; length=735bp; location=Sequence derived from: chr2.1_tiancheng:34675286..34677826+ (Citrus sinensis
ATGGATGGTTTAGGGAGAAATGAAAATCAGACGACTCCTCGTACATCTGA
TCAATTGGGTCCTGACAAATCAGGCGATAAAGAGCCTTGGAGCCTGGATT
CACGAGTAACAGAATGGACAGATGAGAAGCATAGTTTGTACCTTAAATCC
ATGGAAGCATCATTTGTTAACCAGTTATATAGTGCTGCGGATATTCCTGC
TCGGAGCGATGTTACATCATCTAGGAAAATGCATTGTGCTACTTCTGGCC
AGTTTAAGATTCTTCGACGTGGTTGCTGGCAGAAGCTCTACTTAGAGAGA
CCTGAATTTCAACCAAATAGGACATGCAATTCTCATGGTCTTTCGGCAAA
TCCGTGGATCCGGCATTTTAAATCTGAATGCAAGCCAAAAACATTTGCGT
CTCCATATCCTCCAGGTATTGCTGGATCAAAAATAGTAATCAATATTAGT
GGGAAGAAGGCAGTGTCCTATGAAGCAGCTACTAGATCTGAACACCTTGA
TGCGTCTCATTTGTGTCGTCATGATTTGTCTGGCAGTAGTGCAGAGGTGT
CGGATCAGAACTTCATTGATGAAGAGAGTAAAGGTGAGAAAGCAAGCCGG
ACGTGTAGCTCAAAAAAGATGAAAACTGAGAAACCTGATGCTTCAAGCCA
TGATGATCAGGTCGTCCCACGCCAGCAAAGCAAGCGTACCATGACAGAAA
ACTGTCCTGAGAAGTGTGTTTTTCCAGCCAGATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR044678	COR27/28

Vocabulary: **Biological Process**
Term	Definition
GO:0009409	response to cold
GO:0042752	regulation of circadian rhythm