EVM_prediction_chr2.1_tiancheng.2272
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 237.269 bits (604), Expect = 4.291e-79 Identity = 126/193 (65.28%), Postives = 148/193 (76.68%), Query Frame = 0 Query: 31 SPVILSFPFYRTTSFLHLRVSAA-LRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQ 222 SP+ L FP +TS L RV A SDG KIG+ ES G LLR+P ++ + E++E D+ ++DWEDKILE TVPLVGFVRMILHSG+Y + RLSPEHERTI+E LLPYHPE +KKIGCGIDYI +G+HPDFESSRC+FIVRKDGE+VDFSYWKCIKGLI+K YPLYADSFILRHFR R + Sbjct: 29 SPLCLYFPRGDSTS-LRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE--FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 233.417 bits (594), Expect = 1.428e-77 Identity = 125/193 (64.77%), Postives = 147/193 (76.17%), Query Frame = 0 Query: 31 SPVILSFPFYRTTSFLHLRVSAA-LRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQ 222 SP+ L FP +TS L RV A SDG KIG+ ES G LLR+P ++ + E++E D+ ++DWEDKILE TVPLVGFVRMILHSG+Y + RLSPEHERTI+E LLPYHPE +KKIGCGIDYI + +HPDFESSRC+FIVRKDGE+VDFSYWKCIKGLI+K YPLYADSFILRHFR R + Sbjct: 29 SPLCLYFPRGDSTS-LRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE--FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 129.798 bits (325), Expect = 2.779e-37 Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 0 Query: 94 ESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFR 217 E D W + E +IL D P+ + ILHS RY G RL E E+ ++E+LLPYHP K KIGCG+D+I + HP F SRCLF+VR DG +DFSY KC++ +R YP +A+ FI HF+ Sbjct: 80 EDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFK 203
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. Araport11
Match: | (Symbols: DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B | DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 93.5893 bits (231), Expect = 1.174e-21 Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 0 Query: 105 EDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRR 226 E ++L D P++ +R I+H Y G +S + + +LE++L +HP+ + K+G G+D+IT+ H F SRC F+V DG DFSY K + + K YP A+ FI ++F + R G R Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFT-KPRPSGNR 1856
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 2.373e-78 Identity = 123/185 (66.49%), Postives = 141/185 (76.22%), Query Frame = 0 Query: 46 LHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDD--------EGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQ 222 L L AA+++ G + G S LLRKPV+S + E + ES+D+ EGW+DWED+ILEDTVPLVGFVRMILHSG+Y G RLSP+H+RTIL+RLLPYHPE KKIG G+DYIT+GYHPDFE+SRCLFIVRKDGE VDFSYWKCIKGLIRKNYPLYADSFILRHFR R R Sbjct: 40 LRLCRCAAVKT-GSEGGGIRSDNAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRRN 223
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy Swiss-Prot
Match: DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 4.095e-78 Identity = 126/193 (65.28%), Postives = 148/193 (76.68%), Query Frame = 0 Query: 31 SPVILSFPFYRTTSFLHLRVSAA-LRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQ 222 SP+ L FP +TS L RV A SDG KIG+ ES G LLR+P ++ + E++E D+ ++DWEDKILE TVPLVGFVRMILHSG+Y + RLSPEHERTI+E LLPYHPE +KKIGCGIDYI +G+HPDFESSRC+FIVRKDGE+VDFSYWKCIKGLI+K YPLYADSFILRHFR R + Sbjct: 29 SPLCLYFPRGDSTS-LRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDE--FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.158e-20 Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 0 Query: 105 EDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRR 226 E ++L D P++ +R I+H Y G +S + + +LE++L +HP+ + K+G G+D+IT+ H F SRC F+V DG DFSY K + + K YP A+ FI ++F + R G R Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFT-KPRPSGNR 1856
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy Swiss-Prot
Match: DCL_PSEMZ (Protein DCL, chloroplastic (Fragment) OS=Pseudotsuga menziesii OX=3357 PE=1 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 3.339e-7 Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0 Query: 100 GWIDWEDKILEDTVPLVGFVRMI 122 W+DWED+IL+DTVPLV FVRMI Sbjct: 1 AWVDWEDQILQDTVPLVNFVRMI 23
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A067H961|A0A067H961_CITSI (Protein DCL, chloroplastic OS=Citrus sinensis OX=2711 GN=CISIN_1g027145mg PE=4 SV=1) HSP 1 Score: 466.077 bits (1198), Expect = 6.468e-166 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 Query: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY Sbjct: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A2H5NH76|A0A2H5NH76_CITUN (Protein DCL, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_045030 PE=4 SV=1) HSP 1 Score: 462.996 bits (1190), Expect = 1.185e-164 Identity = 225/227 (99.12%), Postives = 227/227 (100.00%), Query Frame = 0 Query: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEK+EGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEF+KKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY Sbjct: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKEEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: V4T482|V4T482_CITCL (Protein DCL, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10002377mg PE=4 SV=1) HSP 1 Score: 459.144 bits (1180), Expect = 3.924e-163 Identity = 223/227 (98.24%), Postives = 225/227 (99.12%), Query Frame = 0 Query: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227 MSMASL+KPT LVHRSSHNHSNPTSTSLFLSPVILSFPFYR TSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEF+KKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY Sbjct: 1 MSMASLVKPTPLVHRSSHNHSNPTSTSLFLSPVILSFPFYRMTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQGGRRY 227
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A5C7H5T3|A0A5C7H5T3_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021587 PE=4 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 3.718e-111 Identity = 177/234 (75.64%), Postives = 192/234 (82.05%), Query Frame = 0 Query: 1 MSMASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDE-----------GWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHRQG 223 MSMAS+ KP VHR HSNPTS L SPVILSFPFYR TS L LRVSA L+S+GDKIGSQES G NLLRKP++S SRDL GNS+K+E E++E WIDWEDKILE+TVPLVGFVRM+LHSGRYESG RL PEHE TILERLLPYHPEF+KKIGCGIDYITIGYHP+FE SRCLF+VRKDGEL+DFSYWKCIKGLIRKNYPLYADSFILRHFR RHR G Sbjct: 1 MSMASITKPPPFVHR----HSNPTS--LCSSPVILSFPFYRPTS-LRLRVSA-LKSNGDKIGSQESYGSNLLRKPIISSTSRDLSGNSDKEESSDEEEEEDDEEEEEEEEAWIDWEDKILEETVPLVGFVRMLLHSGRYESGARLDPEHETTILERLLPYHPEFEKKIGCGIDYITIGYHPEFEGSRCLFVVRKDGELIDFSYWKCIKGLIRKNYPLYADSFILRHFR-RHRSG 225
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A2P6Q0I5|A0A2P6Q0I5_ROSCH (Protein DCL OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0308021 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 3.558e-95 Identity = 149/220 (67.73%), Postives = 166/220 (75.45%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALRSDG-DKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEGESEDDEGWIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHR 221 MASL KP LLVH N S+ + P LSFP +TTS + +DG + G QE+ G LLRKPVV D+DG SE+DEGE D W+DWEDKILEDTVPLVGFVRMILHSG+YESG RLSPEHE+T+LERLLP+HPE KKIG GIDY+T+GYHPDFESSRCLFIV+KDG LVDFSYWKCIKGLIRKNYPLYADSFILRHFR R R Sbjct: 1 MASLSKPPLLVH-------NHLSSLALIGPATLSFPIAKTTSLRTRLCALKTGADGGSRTGRQEADGPELLRKPVVKDV--DVDGISEEDEGE---DGKWVDWEDKILEDTVPLVGFVRMILHSGKYESGDRLSPEHEKTVLERLLPFHPEAAKKIGSGIDYVTVGYHPDFESSRCLFIVQKDGTLVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRR 208
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A7J9CXA9|A0A7J9CXA9_GOSGO (Protein DCL, chloroplastic OS=Gossypium gossypioides OX=34282 GN=Gogos_019794 PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 6.316e-94 Identity = 154/218 (70.64%), Postives = 174/218 (79.82%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALR--SDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEG-ESEDDEG-WIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 216 MAS++ P + H S PTS S SPVILS+PF++TTS L +R A LR SDG KIGSQE+ G + LRKP P +D DG E++EG E + + G W DWED+ILEDTVPLVGFVRMI+HSG+Y +G RLSPEHERTILERLLPYHPEF+KKIGCGIDYIT+GYHPDF SRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF Sbjct: 1 MASILNPPPPPY--FHRTSMPTSVSS--SPVILSYPFFKTTS-LQVRFKA-LRTWSDGGKIGSQEAYGADFLRKPSTVP-KKDSDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRMIIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 211
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A5D2UFV3|A0A5D2UFV3_GOSMU (Protein DCL, chloroplastic OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G021600v1 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.992e-93 Identity = 154/218 (70.64%), Postives = 173/218 (79.36%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALR--SDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEG-ESEDDEG-WIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 216 MAS++ P + H S PTS S SPVILS+PF +TTS L +R A LR SDG KIGSQE+ G + LRKP P +D DG E++EG E + + G W DWED+ILEDTVPLVGFVRMI+HSG+Y +G RLSPEHERTILERLLPYHPEF+KKIGCGIDYIT+GYHPDF SRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF Sbjct: 1 MASILNPPPPPY--FHRTSMPTSVSS--SPVILSYPFLKTTS-LQVRFKA-LRTWSDGGKIGSQEAYGADFLRKPSTVP-KKDSDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRMIIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 211
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A5D2C132|A0A5D2C132_GOSDA (Protein DCL, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_D06G021500v1 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.992e-93 Identity = 154/218 (70.64%), Postives = 173/218 (79.36%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALR--SDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEG-ESEDDEG-WIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 216 MAS++ P + H S PTS S SPVILS+PF +TTS L +R A LR SDG KIGSQE+ G + LRKP P +D DG E++EG E + + G W DWED+ILEDTVPLVGFVRMI+HSG+Y +G RLSPEHERTILERLLPYHPEF+KKIGCGIDYIT+GYHPDF SRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF Sbjct: 1 MASILNPPPPPY--FHRTSMPTSVSS--SPVILSYPFLKTTS-LQVRFKA-LRTWSDGGKIGSQEAYGADFLRKPSTVP-KKDSDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRMIIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 211
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A0D2R0L6|A0A0D2R0L6_GOSRA (Protein DCL, chloroplastic OS=Gossypium raimondii OX=29730 GN=B456_010G020200 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.992e-93 Identity = 154/218 (70.64%), Postives = 173/218 (79.36%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALR--SDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEG-ESEDDEG-WIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 216 MAS++ P + H S PTS S SPVILS+PF +TTS L +R A LR SDG KIGSQE+ G + LRKP P +D DG E++EG E + + G W DWED+ILEDTVPLVGFVRMI+HSG+Y +G RLSPEHERTILERLLPYHPEF+KKIGCGIDYIT+GYHPDF SRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF Sbjct: 1 MASILNPPPPPY--FHRTSMPTSVSS--SPVILSYPFLKTTS-LQVRFKA-LRTWSDGGKIGSQEAYGADFLRKPSTVP-KKDSDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRMIIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 211
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Match: A0A2P5Y862|A0A2P5Y862_GOSBA (Protein DCL, chloroplastic OS=Gossypium barbadense OX=3634 GN=ES319_D06G019800v1 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.992e-93 Identity = 154/218 (70.64%), Postives = 173/218 (79.36%), Query Frame = 0 Query: 3 MASLIKPTLLVHRSSHNHSNPTSTSLFLSPVILSFPFYRTTSFLHLRVSAALR--SDGDKIGSQESQGFNLLRKPVVSPASRDLDGNSEKDEG-ESEDDEG-WIDWEDKILEDTVPLVGFVRMILHSGRYESGVRLSPEHERTILERLLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 216 MAS++ P + H S PTS S SPVILS+PF +TTS L +R A LR SDG KIGSQE+ G + LRKP P +D DG E++EG E + + G W DWED+ILEDTVPLVGFVRMI+HSG+Y +G RLSPEHERTILERLLPYHPEF+KKIGCGIDYIT+GYHPDF SRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF Sbjct: 1 MASILNPPPPPY--FHRTSMPTSVSS--SPVILSYPFLKTTS-LQVRFKA-LRTWSDGGKIGSQEAYGADFLRKPSTVP-KKDSDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRMIIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 211 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 4 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy Swiss-Prot
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2272 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins
Date Performed: 2023-08-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.2272_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2272_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2272; organism=Citrus sinensis; type=mRNA; length=684bpback to top protein sequence of evm.model.chr2.1_tiancheng.2272_cs-GNU_v1 >evm.model.chr2.1_tiancheng.2272_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2272_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.2272_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=228bpback to top mRNA from alignment at chr2.1_tiancheng:34660628..34662499- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1872bp; location=Sequence derived from: chr2.1_tiancheng:34660628..34662499- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:34660628..34662499- >evm.model.chr2.1_tiancheng.2272_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2272_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2272; organism=Citrus sinensis; type=CDS; length=684bp; location=Sequence derived from: chr2.1_tiancheng:34660628..34662499- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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