EVM_prediction_chr2.1_tiancheng.1277
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A2H5PZD8|A0A2H5PZD8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179230 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 2.011e-78 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 Query: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT
Sbjct: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A067EQY6|A0A067EQY6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033678mg PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 2.011e-78 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 Query: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT
Sbjct: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A5C7I9M5|A0A5C7I9M5_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_006724 PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.471e-37 Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = 0 Query: 5 VSISFSTPLCA--PPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSN--RGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+SI+FS PLC P TS KKMC K LG L+ A V+ TN PCSSN RGLFSV+ +CH HLT++ K D IV+ DVSSCTHT I GYWVGPDIDDGWG+VEAFVN++T
Sbjct: 9 ISINFSAPLCCCVPQTSLKKMCSEKSALGRLSHKASVVTATNFPAPCSSNSNRGLFSVSRNCHCHLTATCKRCDEIVNCSFDVSSCTHTIITGYWVGPDIDDGWGFVEAFVNRMT 123
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A7N2L3I8|A0A7N2L3I8_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.387e-27 Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 0 Query: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
MA L+SISFS PLC P F+++ K G L+ A + + T L C++N+G+ SVN S HRH + S ++SCTH IAGYWVGPD+DDGWG+VEAFVNQIT
Sbjct: 1 MACLLSISFSMPLCPPTILFQEIYPRKSYHGRLSNQATAKTATKLLTICNANKGILSVNWS-HRHHLITPSIFPSETSSCPLNSCTHMIIAGYWVGPDLDDGWGFVEAFVNQIT 113
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: U5GA52|U5GA52_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G027500 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.179e-27 Identity = 58/114 (50.88%), Postives = 72/114 (63.16%), Query Frame = 0 Query: 2 AYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+ LVSISF PL AP SFK++ K + L+ A S + TN L PC++ + SVN SC L + + +VS + VSSCTH I GYWVGPDIDDGWG+VE FVNQIT
Sbjct: 3 SLLVSISFPMPLSAPKFSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNQSCGGCLATPTNHFYRLVSSCMHVSSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A4U5QSC4|A0A4U5QSC4_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000050500 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 9.139e-27 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0 Query: 2 AYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+ LVSISF PL AP SFK++ K + L+ A S + TN L PC++ + SVN SC L + + +VS + +SSCTH I GYWVGPDIDDGWG+VE FVNQIT
Sbjct: 3 SLLVSISFPMPLSAPKLSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNQSCGGCLATPTNHFYRLVSSCMHLSSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A6M2F016|A0A6M2F016_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.112e-26 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0 Query: 2 AYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+ LVSISF PL AP SFK++ K + L+ A S + TN L PC++ + SVN SC L + + +VS + +SSCTH I GYWVGPDIDDGWG+VE FVNQIT
Sbjct: 3 SLLVSISFPMPLSAPKFSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNESCGGCLATPTNHFYRLVSSCMHISSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A8X7ZVK1|A0A8X7ZVK1_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_018488 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.560e-26 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0 Query: 2 AYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+ LVSISF PL AP SFK++ K + L+ A S + TN L PC++ + SVN SC L + + +VS + +SSCTH I GYWVGPDIDDGWG+VE FVNQIT
Sbjct: 3 SLLVSISFPMPLSAPKFSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNQSCGGCLATPTNHFYRLVSSCMHLSSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A8X8CRM3|A0A8X8CRM3_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020457 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.337e-26 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0 Query: 2 AYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVS-FLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114
+ LVSISF PL AP SFK++ K + L+ A S + TN L PC++ + SVN SC L + + +VS + +SSCTH I GYWVGPDIDDGWG+VE FVNQIT
Sbjct: 3 SLLVSISFPMPLFAPKFSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNQSCGGCLATPTNHFYRLVSSCMHLSSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Match: A0A2I4HPN8|A0A2I4HPN8_JUGRE (Uncharacterized protein LOC109020151 isoform X1 OS=Juglans regia OX=51240 GN=LOC109020151 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.985e-26 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 0 Query: 1 MAYLVSISFSTPLCAPPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLFSVNLSCHRHLTSSSKPLDGIVSF-LDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQ 112
MAYL+S+SFSTPLC P +++ + G L++ A + + L C++N G+ SV+ S HL + S+ + I S+ +V CTH +AGYWVGPD DDGWG+VEAFVNQ
Sbjct: 1 MAYLLSVSFSTPLCNPRIQLQEVQPRRLSPGRLSRQANARTAPKLLATCNANSGILSVSWSHRHHLVTPSRYVSEITSYPCNVGYCTHMVMAGYWVGPDPDDGWGFVEAFVNQ 113 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs.
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs.
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1277 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.1277_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1277_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1277; organism=Citrus sinensis; type=mRNA; length=345bpback to top protein sequence of evm.model.chr2.1_tiancheng.1277_cs-GNU_v1 >evm.model.chr2.1_tiancheng.1277_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1277_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.1277_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=115bpback to top mRNA from alignment at chr2.1_tiancheng:27479824..27481144+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1321bp; location=Sequence derived from: chr2.1_tiancheng:27479824..27481144+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:27479824..27481144+ >evm.model.chr2.1_tiancheng.1277_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1277_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1277; organism=Citrus sinensis; type=CDS; length=345bp; location=Sequence derived from: chr2.1_tiancheng:27479824..27481144+ (Citrus sinensisback to top |