EVM_prediction_chr2.1_tiancheng.1066
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: V4SZJ1|V4SZJ1_CITCL (Syntaxin N-terminal domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 1.635e-135 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A2H5PPA4|A0A2H5PPA4_CITUN (Syntaxin N-terminal domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_154820 PE=4 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 1.103e-134 Identity = 189/191 (98.95%), Postives = 191/191 (100.00%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINADSYDQGQ+RASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGQMRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A067DE25|A0A067DE25_CITSI (Syntaxin N-terminal domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1) HSP 1 Score: 384.03 bits (985), Expect = 1.258e-134 Identity = 189/191 (98.95%), Postives = 191/191 (100.00%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINA+SYDQGQ+RASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQGQMRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: V4SF52|V4SF52_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 8.353e-132 Identity = 190/200 (95.00%), Postives = 190/200 (95.00%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 200
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A067DQ03|A0A067DQ03_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1) HSP 1 Score: 374.785 bits (961), Expect = 7.495e-131 Identity = 188/200 (94.00%), Postives = 190/200 (95.00%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINA+SYDQGQ+RASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQGQMRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 200
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A6J1A8X1|A0A6J1A8X1_9ROSI (Uncharacterized protein LOC110415866 isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110415866 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 2.511e-59 Identity = 103/200 (51.50%), Postives = 137/200 (68.50%), Query Frame = 0 Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVA-----------IRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
KQ L+ DAW+REAQEA KLVE+I+ RVKNK+ + Q++ DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RW MLS++QLR KALA+ LYA+ P R G L + + + N + +Q Q + S +KD+ ELL+PL++ + + S +LL K+ W G +LG+AA +FIL ++CAVI
Sbjct: 3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWNMLSEMQLRTKALALSLYAL--PTSSRPGCLTPGNAKAINTNVNDCEQDQTKTSLSKDDPELLRPLISNDVTMQSQLQMKQCGTSTSFSLLQKVFWIFGAVLGSAALIFILVLICAVI 200
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A061F374|A0A061F374_THECC (Syntaxin of plants 52, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026395 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.319e-58 Identity = 103/200 (51.50%), Postives = 138/200 (69.00%), Query Frame = 0 Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVA-----------IRRSSFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
KQ L+ DAW+REAQEA KLVE+I+ RVKNK+ + Q++ DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RWKMLS++QLR KALA+ LYA+ P R G L + + N +Q Q ++S ++D+ ELL+PL++ + + S++LL K+ W G +LG+AA +FIL ++CAVI
Sbjct: 3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWKMLSELQLRTKALALSLYAL--PTSSRPGCLTPENAEAINTNVSDCEQDQTKSSSSRDDPELLRPLISNDVTLQSQVQMKQCGTSTSLSLLQKVFWIFGAVLGSAALIFILVLICAVI 200
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A8J4W1G0|A0A8J4W1G0_9ROSI (Uncharacterized protein OS=Castanea mollissima OX=60419 GN=CMV_009474 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 5.559e-56 Identity = 105/200 (52.50%), Postives = 135/200 (67.50%), Query Frame = 0 Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPA--ADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRS-------SFISMTLLWKICWTIGIILGAAAFLFILFILCAVI 191
MAN LV+DAW++EA+EA KLVE ++ +KN++ E S A+SKLLE+GVKLDRLESLL NPPSKP LT+EDL+ RWKMLSDIQLR + +A+ LYA +P P R GGLP AD +E S Q Q++AS +K+ SELL+PLV+ + S+ M+LLWK CWTI + L AA LFI +L AV+
Sbjct: 1 MANHN-LVIDAWIKEAEEALKLVEGLENTIKNRNPEH----FSLRSTAKSKLLELGVKLDRLESLLHNPPSKPNLTDEDLKFRWKMLSDIQLRTREVALSLYA--FPSPNRSGGLPTAVADAKEKSAAIKSCCQDQMKASSSKENSELLEPLVSDEATQSHSQFGSYRPMSLLWKACWTIIVFLVVAALLFIFVLLRAVL 193
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A5E4EBV0|A0A5E4EBV0_PRUDU (PREDICTED: zeta-carotene desaturase OS=Prunus dulcis OX=3755 GN=ALMOND_2B013071 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.407e-56 Identity = 98/185 (52.97%), Postives = 129/185 (69.73%), Query Frame = 0 Query: 3 NKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFIL 187
++Q LV DAW+ EA+EA LVE+++ + KNK +Q LS IARSKLLE+GVKLDRLESLL NPPSKPILT ED++ RWKMLSDIQLR + LA+ + + R LPA T+E + NA+ DQ +++ SF+KD+ ELL+PL+ +S+I M+L WK CW I ++LG A LFIL L
Sbjct: 2 SRQSLVKDAWIIEAEEASSLVEDLEAKTKNKYPDQ----LSLREIARSKLLELGVKLDRLESLLHNPPSKPILTKEDVDFRWKMLSDIQLRTRTLALSFFVL-----ERSESLPA--TKEDNKNANRCDQDEVKLSFSKDDQELLKPLLIKPSNSYIPMSLRWKTCWGISVVLGVTACLFILLFL 175
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Match: A0A251P1A4|A0A251P1A4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G340300 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.209e-55 Identity = 99/185 (53.51%), Postives = 128/185 (69.19%), Query Frame = 0 Query: 3 NKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQGQIRASFAKDESELLQPLVAIRRSSFISMTLLWKICWTIGIILGAAAFLFILFIL 187
++Q LV DAW+ EA+EA LVE+++ + KNK Q LS IARSKLLE+GVKLDRLESLL NPPSKPILT ED++ RWKMLSDIQLR + LA+ + + R LPA T+E + NA+ DQ +++ SF+KD+ ELL+PLV +S+I M+L WK CW I ++LG A LFIL L
Sbjct: 2 SRQSLVKDAWIIEAEEASSLVEDLEAKTKNKYPGQ----LSLREIARSKLLELGVKLDRLESLLHNPPSKPILTKEDVDFRWKMLSDIQLRTRTLALSFFVL-----ERSESLPA--TKEDNKNANRCDQDEVKLSFSKDDQELLKPLVIKPSNSYIPMSLRWKTCWGISVVLGVTACLFILIFL 175 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs.
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs.
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1066 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.1066_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1066_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1066; organism=Citrus sinensis; type=mRNA; length=576bpback to top protein sequence of evm.model.chr2.1_tiancheng.1066_cs-GNU_v1 >evm.model.chr2.1_tiancheng.1066_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1066_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.1066_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=192bpback to top mRNA from alignment at chr2.1_tiancheng:24740898..24743321- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2424bp; location=Sequence derived from: chr2.1_tiancheng:24740898..24743321- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:24740898..24743321- >evm.model.chr2.1_tiancheng.1066_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1066_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1066; organism=Citrus sinensis; type=CDS; length=576bp; location=Sequence derived from: chr2.1_tiancheng:24740898..24743321- (Citrus sinensisback to top |