EVM_prediction_chr2.1_tiancheng.2232
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 229.565 bits (584), Expect = 7.651e-77 Identity = 116/181 (64.09%), Postives = 133/181 (73.48%), Query Frame = 0 Query: 18 AARLLGLPRVTFCSAAPS-EPTQPEEKLSSADNNTTTLLTVKEPPKYHRW--ADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG* 195
A +L R CS A + + + +S + + + V P + W DPDYRKWK+ E EILRDIEPI LAKEILHS RY+DGERL +DE+ V+EKLL YHP+S+DKIGCGLD IMVDRHPQF HSRCLFVVRTDGGWIDFSYQKCLRAY+RDKYPSHAERFIREHF R S *
Sbjct: 28 AGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRASS* 208
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 125.561 bits (314), Expect = 6.230e-36 Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 124.405 bits (311), Expect = 1.950e-35 Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 0 Query: 76 DKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 99 DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B | DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 119.013 bits (297), Expect = 6.869e-31 Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
+E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23359611 REVERSE LENGTH=1145) HSP 1 Score: 55.8398 bits (133), Expect = 3.895e-9 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1029 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1135
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1439) HSP 1 Score: 55.8398 bits (133), Expect = 4.381e-9 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1323 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1429
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 55.8398 bits (133), Expect = 4.468e-9 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 55.8398 bits (133), Expect = 4.468e-9 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy Swiss-Prot
Match: DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.985e-35 Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.048e-34 Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 0 Query: 70 DYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
D W D ED+IL D P++ + ILHS +Y G+RL+ D +R ++++LL YHP + KIG G+D I V HP F +SRCLF+VR DG +DFSY KC++ IR YP +A+ FI HF +
Sbjct: 98 DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.774e-30 Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
+E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy Swiss-Prot
Match: NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 4.406e-8 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A067GWR9|A0A067GWR9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047760mg PE=4 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 4.196e-141 Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAPMLFRGLPLLRFRPAARLLGLPR TFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG
Sbjct: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: V4SJN6|V4SJN6_CITCL (Protein DCL, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10002565mg PE=4 SV=1) HSP 1 Score: 394.045 bits (1011), Expect = 1.853e-138 Identity = 190/194 (97.94%), Postives = 192/194 (98.97%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MA+PMLF GLPLLRFRPAARLLGLPR TFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFG+SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG
Sbjct: 1 MASPMLFWGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A5C7H5U5|A0A5C7H5U5_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021632 PE=4 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 2.646e-109 Identity = 152/194 (78.35%), Postives = 166/194 (85.57%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAA +L RG+PL R R AARLL P FC AA SE +PEE +SSA+ TTTLL+VK P +YH DPDYRKW+DKE+EILRDIEPI FLAK+I+HS RYMDGERLT +DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF HSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGS
Sbjct: 1 MAASLLLRGVPLQRLRLAARLLVQPSRQFCLAAASESNKPEENVSSAEKTTTTLLSVKHPVRYHSLDDPDYRKWRDKEEEILRDIEPITFLAKDIIHSERYMDGERLTVEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSS 194
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A061FIP8|A0A061FIP8_THECC (DCL protein OS=Theobroma cacao OX=3641 GN=TCM_033766 PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 2.617e-101 Identity = 149/200 (74.50%), Postives = 168/200 (84.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRP------AARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L +G PLLR R AARLL PR +C+AA E EE++SSA+ ++T+L+V EPPKYHRW DPDYRKWKDKE+EILRDIEPI+ L+KEILHS RYMDGERLT +DE VVEKLL++HPHSEDKIGCGLD+IMVDRHPQF HSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HF RGSG
Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCTAA--ESAGHEEEVSSAEK-SSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A5B7BJS3|A0A5B7BJS3_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_037492 PE=4 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 4.631e-97 Identity = 144/197 (73.10%), Postives = 162/197 (82.23%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVT---FCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L RG+PLLRFR L L +T +C+AA E +P++ +S+A TT + K+PP Y RW DPDYRKWKDKE EILRDI+PI L KEILHS RYMDGERLTA+DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF HSRCLFV+RTDGGWIDFSYQKCLRAYIR+KYP HAERFIREHF RGSG
Sbjct: 1 MAAPLLLRGVPLLRFRLQHHRLALGILTHRPWCTAA--ESARPDDDVSNA-GQTTAVFRAKDPPNYPRWDDPDYRKWKDKEGEILRDIDPITLLTKEILHSDRYMDGERLTAEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPFHAERFIREHFKRGSG 194
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A1U7XY00|A0A1U7XY00_NICSY (Protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 1.033e-95 Identity = 136/197 (69.04%), Postives = 160/197 (81.22%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
MAAP+L RG PLLR R + L P + +A SE QP + +S ++NTTT+L K+PPKY RW DPDYRKWK++E +IL+DIEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPH EDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS
Sbjct: 1 MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSASSESGQPYDDAASIEDNTTTVLRTKDPPKYPRWPDPDYRKWKERETQILKDIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A6A2WRM6|A0A6A2WRM6_HIBSY (F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116997pilonHSYRG00945 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 1.827e-95 Identity = 141/200 (70.50%), Postives = 162/200 (81.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPA------ARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MA+P+L +G+PLLR R A + PR FC+A S+ T +E++SSA+ + ++LTV++PPKYHRW DPDYRKWKDKE+EILRDIEPI+ L KEILHS RY DGERL DE V+EKLL +HPHSEDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGSG
Sbjct: 1 MASPLLLKGIPLLRIRLQRYNCLFAGTVSSPRRPFCAA--SDTTGHKEEVSSAEK-SGSVLTVRDPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLVKEILHSNRYKDGERLIVSDEETVLEKLLRHHPHSEDKIGCGLDSIMVDRHPQFSRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A2H5NHC1|A0A2H5NHC1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_045410 PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 2.109e-95 Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMV 139
MA+PMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIM+
Sbjct: 1 MASPMLFRGLPLLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIML 139
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A314KQB0|A0A314KQB0_NICAT (Protein dcl, chloroplastic OS=Nicotiana attenuata OX=49451 GN=DCL_0 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 2.402e-95 Identity = 135/197 (68.53%), Postives = 159/197 (80.71%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLRFRPAARLLGLPRVTFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
MAAP+L RG PLLR R + L P + +A SE QP + +S + NTTT+L K+PPKY RW DPDYRKWK++E +IL++IEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPH EDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS
Sbjct: 1 MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSAASESAQPYDDAASNEENTTTVLRTKDPPKYPRWPDPDYRKWKERETQILKEIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Match: A0A8T1N1T6|A0A8T1N1T6_CARIL (DCL protein OS=Carya illinoinensis OX=32201 GN=CIPAW_16G037700 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 2.930e-95 Identity = 141/201 (70.15%), Postives = 160/201 (79.60%), Query Frame = 0 Query: 1 MAAPMLFRGLPLLR-------FRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L RGLPL R +R AA PR +C++A EP++ ++ LSS D +T + +PPKY RW DPDYRKWKDKE EIL+DI PI L KEILHS RY+DGERLT +DE+AVVEKLLAYHPHS+DKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI+EHF RGSG
Sbjct: 1 MAAPLLLRGLPLFRLRLHHHQYRAAAGFFSTPRRPWCTSA--EPSRADDSLSSTDKSTPAW-SAGDPPKYPRWDDPDYRKWKDKEVEILKDIVPITLLTKEILHSNRYLDGERLTVEDEKAVVEKLLAYHPHSDDKIGCGLDSIMVDRHPQFKRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIKEHFKRGSG 198 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 8 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy Swiss-Prot
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.2232 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins
Date Performed: 2023-08-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.2232_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2232_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2232; organism=Citrus sinensis; type=mRNA; length=585bpback to top protein sequence of evm.model.chr2.1_tiancheng.2232_cs-GNU_v1 >evm.model.chr2.1_tiancheng.2232_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2232_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.2232_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=195bpback to top mRNA from alignment at chr2.1_tiancheng:34397609..34401198- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3590bp; location=Sequence derived from: chr2.1_tiancheng:34397609..34401198- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:34397609..34401198- >evm.model.chr2.1_tiancheng.2232_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.2232_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.2232; organism=Citrus sinensis; type=CDS; length=585bp; location=Sequence derived from: chr2.1_tiancheng:34397609..34401198- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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