EVM_prediction_HIC_ASM_8.545 | Citrus Genome Database

Transcript Overview


Name	EVM_prediction_HIC_ASM_8.545
Unique Name	evm.model.HIC_ASM_8.545-csg_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	579

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Gannanzao v1.0 genome	2023-12-14
InterProScan Analysis for Citrus sinensis cv. Gannanzao v1.0 proteins	2024-01-25
Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs UniProt TrEMBL	2024-01-25
Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot	2023-08-23
Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs Araport11	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccsgL143	Citrus clementina genome v1.0 (JGI)	Citrus clementina
clecsgL109	Citrus limon cv. Eureka genome v1.0	Citrus limon
caucsgL210	Citrus australis genome v1.0 (UQ)	Citrus australis
clecsgL146	Citrus limon cv. Eureka genome v1.0	Citrus limon
ccrcsgL233	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsgL538	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgL319	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cscsgL714	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csgdvaR052	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csgdvbR056	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csgfhsR088	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csgswoR071	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csgzkR125	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EVM_prediction_HIC_ASM_8.545	evm.TU.HIC_ASM_8.545-csg_v1	Citrus sinensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.HIC_ASM_8.545.exon3-csg_v1	evm.model.HIC_ASM_8.545.exon3-csg_v1	Citrus sinensis	exon
evm.model.HIC_ASM_8.545.exon2-csg_v1	evm.model.HIC_ASM_8.545.exon2-csg_v1	Citrus sinensis	exon
evm.model.HIC_ASM_8.545.exon1-csg_v1	evm.model.HIC_ASM_8.545.exon1-csg_v1	Citrus sinensis	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.HIC_ASM_8.545.utr3p2-csg_v1	evm.model.HIC_ASM_8.545.utr3p2-csg_v1	Citrus sinensis	three_prime_UTR
evm.model.HIC_ASM_8.545.utr3p1-csg_v1	evm.model.HIC_ASM_8.545.utr3p1-csg_v1	Citrus sinensis	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.evm.model.HIC_ASM_8.545-csg_v1	cds.evm.model.HIC_ASM_8.545-csg_v1_2	Citrus sinensis	CDS
cds.evm.model.HIC_ASM_8.545-csg_v1	cds.evm.model.HIC_ASM_8.545-csg_v1	Citrus sinensis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.HIC_ASM_8.545-csg_v1	evm.model.HIC_ASM_8.545-csg_v1	Citrus sinensis	polypeptide
evm.model.HIC_ASM_8.545-csg_v1	evm.model.HIC_ASM_8.545-csg_v1-protein	Citrus sinensis	polypeptide

Homology

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A067EQE4|A0A067EQE4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029505mg PE=4 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.267e-136
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0

Query:    1 MGSKSNMQTAFQSRLGKIKTHLLALFAACCANIQTLLRPARKERAQMALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            MGSKSNMQTAFQSRLGKIKTHLLALFAACCANIQTLLRPARKERAQMALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV
Sbjct:    1 MGSKSNMQTAFQSRLGKIKTHLLALFAACCANIQTLLRPARKERAQMALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: V4T2J2|V4T2J2_CITCL (50S ribosomal protein 5 alpha, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10013042mg PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 3.271e-98
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0

Query:   47 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPP KMNKLKNV
Sbjct:    1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPLKMNKLKNV 146

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A2H5N1K2|A0A2H5N1K2_CITUN (50S ribosomal protein 5 alpha, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_007360 PE=4 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 9.170e-98
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0

Query:   47 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHH KSCKSFCDISKKRGELIVKVSSDAEVVD+DEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV
Sbjct:    1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHPKSCKSFCDISKKRGELIVKVSSDAEVVDNDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A1Q3D6F4|A0A1Q3D6F4_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31484 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.411e-27
Identity = 72/133 (54.14%), Postives = 88/133 (66.17%), Query Frame = 0

Query:   67 TPYSSPMAFTASPIPRLHMKSMGHH--HLKSC---KSFCDISKKRGELIVKVSSDAEVVDSD--EPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            TP+S  +AF ASPI  LH+K +  +  H       K F   + KR  +IVK +   +  DS+  E Q  SD+ E   L+K+PLD KLQLKLE KMRMK +K+IRLR KKL+ KRRMRK GRWPPSKMNKLKNV
Sbjct:   34 TPFS--IAF-ASPISILHIKPIDLYSRHFNGFWVPKPFA--TNKRVAMIVKAAFGIKGTDSEAGETQCNSDELEDLVLDKVPLDPKLQLKLEQKMRMKSAKRIRLRGKKLIHKRRMRKKGRWPPSKMNKLKNV 161

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A8X7ZHU2|A0A8X7ZHU2_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_024650 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.768e-27
Identity = 69/123 (56.10%), Postives = 81/123 (65.85%), Query Frame = 0

Query:   85 MKSMGHHHLKSC--------KSFCDIS----KKRGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +KSM  +   +C        KSF  I       +G + VK  SD++    DS +P SESDDEE    L+K+PLDSKLQLKLEHKM+MK  KKIRLRRKKL RKR MRK G+WPPSK NKLKNV
Sbjct:   52 LKSMDWYWFSACRLPIGVLSKSFDGICLSTPVGKGLMTVKALSDSKGTGPDSWQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 174

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A8T2YPC6|A0A8T2YPC6_POPDE (50S ribosomal protein 5 OS=Populus deltoides OX=3696 GN=H0E87_013557 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.072e-27
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 0

Query:  106 RGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +G + VK  SD++    DS +P SESDDEE    L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV
Sbjct:   52 KGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 141

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A2K1ZVZ7|A0A2K1ZVZ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G030700 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.317e-27
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 0

Query:  106 RGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +G + VK  SD++    DS +P SESDDEE    L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV
Sbjct:   52 KGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 141

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A8X7ZNG7|A0A8X7ZNG7_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_022463 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.803e-27
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0

Query:   85 MKSMGHHHLKSC--------KSFCDIS----KKRGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +KSM  +   +C        KSF  I       +G + VK  SD++    DS +P SES+DEE    L+K+PLDSKLQLKLEHKM+MK  KKIRLRRKKL RKR MRK G+WPPSK NKLKNV
Sbjct:   52 LKSMDWYWFSACRLPIGVLSKSFDGICLSTPVGKGLMTVKALSDSKGTGPDSWQPVSESNDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 174

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A8T2YNK4|A0A8T2YNK4_POPDE (50S ribosomal protein 5 OS=Populus deltoides OX=3696 GN=H0E87_013557 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.028e-26
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 0

Query:  106 RGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +G + VK  SD++    DS +P SESDDEE    L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV
Sbjct:   31 KGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 120

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Match: A0A6M2ESK1|A0A6M2ESK1_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.353e-26
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0

Query:  106 RGELIVKVSSDAEVV--DSDEPQSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            +G + VK  SD++    DS +P SESDDEE    L+K+PLDSKLQLKLEHKM+MK  KKIRLRRKKL RKR MRK G+WPPSK NKLKNV
Sbjct:   52 KGLITVKALSDSKGTGPDSWQPLSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 141

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot
Match: PSRP5_SPIOL (Large ribosomal subunit protein cL37 alpha OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.571e-20
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 0

Query:  102 ISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            I++KRG ++  VS+ AE    ++      +E    ++ LPL+SKLQLKLE K++MK++KKIRLRR +L+RKR++RK G WPPSKM KLKNV
Sbjct:   52 IAQKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot
Match: PSRP5_PEA (Large ribosomal subunit protein cL37 OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.210e-18
Identity = 48/122 (39.34%), Postives = 76/122 (62.30%), Query Frame = 0

Query:   76 TASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSS-----DAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
            TA+PI R+ +  +  + LK  +    I +K  +  + ++S     D+ V D  E      + +   ++KLPL+SKL+ + E  ++MK++KKIRL+RK+LV+KRR+RK G WPPSKM KL+ V
Sbjct:   25 TANPISRVRI-GLPTNCLKGFRILTPIVQKPRKNSIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

The following BLAST results are available for this feature:

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot
BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy TrEMBL
Analysis Date: 2024-01-25 (Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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x 1


Match Name	E-value	Identity	Description
A0A067EQE4\|A0A067EQE4_CITSI	1.267e-136	100.00	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4T2J2\|V4T2J2_CITCL	3.271e-98	99.32	50S ribosomal protein 5 alpha, chloroplastic OS=Ci...	[more]
A0A2H5N1K2\|A0A2H5N1K2_CITUN	9.170e-98	98.63	50S ribosomal protein 5 alpha, chloroplastic OS=Ci...	[more]
A0A1Q3D6F4\|A0A1Q3D6F4_CEPFO	1.411e-27	54.14	Uncharacterized protein OS=Cephalotus follicularis...	[more]
A0A8X7ZHU2\|A0A8X7ZHU2_POPTO	1.768e-27	56.10	Uncharacterized protein OS=Populus tomentosa OX=11...	[more]
A0A8T2YPC6\|A0A8T2YPC6_POPDE	7.072e-27	66.67	50S ribosomal protein 5 OS=Populus deltoides OX=36...	[more]
A0A2K1ZVZ7\|A0A2K1ZVZ7_POPTR	8.317e-27	66.67	Uncharacterized protein OS=Populus trichocarpa OX=...	[more]
A0A8X7ZNG7\|A0A8X7ZNG7_POPTO	9.803e-27	55.28	Uncharacterized protein OS=Populus tomentosa OX=11...	[more]
A0A8T2YNK4\|A0A8T2YNK4_POPDE	1.028e-26	66.67	50S ribosomal protein 5 OS=Populus deltoides OX=36...	[more]
A0A6M2ESK1\|A0A6M2ESK1_9ROSI	1.353e-26	67.78	Uncharacterized protein OS=Populus davidiana OX=26...	[more]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
PSRP5_SPIOL	8.571e-20	52.75	Large ribosomal subunit protein cL37 alpha OS=Spin...	[more]
PSRP5_PEA	2.210e-18	39.34	Large ribosomal subunit protein cL37 OS=Pisum sati...	[more]

BLAST of EVM_prediction_HIC_ASM_8.545 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus sinensis cv. Gannanzao v1.0 proteins
Date Performed: 2024-01-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040307	Large ribosomal subunit protein cL37	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 47..192

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at HIC_ASM_8:3706899..3709925-
coding sequence from alignment at HIC_ASM_8:3706899..3709925-

mRNA sequence

>evm.model.HIC_ASM_8.545-csg_v1 ID=evm.model.HIC_ASM_8.545-csg_v1; Name=EVM_prediction_HIC_ASM_8.545; organism=Citrus sinensis; type=mRNA; length=579bp
ATGGGGTCAAAGTCAAACATGCAAACGGCATTCCAATCTCGCCTCGGAAA
AATTAAGACGCATTTGCTTGCTTTATTTGCTGCTTGCTGTGCTAACATCC
AAACTTTGTTGCGACCAGCAAGGAAAGAGAGAGCGCAAATGGCTCTCTCT
CTGCTCTTCTCGAGTCCTCTGTCTTCTTCTTCTTCCTCCATATTTTCCAC
ACCATATTCATCACCTATGGCCTTCACCGCTTCCCCAATTCCCAGGTTGC
ATATGAAATCCATGGGTCATCATCACCTGAAATCCTGCAAAAGTTTTTGT
GATATCAGTAAGAAGAGAGGTGAATTGATTGTTAAGGTATCTTCTGACGC
AGAAGTTGTGGACAGTGATGAGCCTCAGTCTGAGAGTGATGATGAAGAAT
ATTTTCCACTTGAAAAACTGCCATTGGACTCAAAGCTGCAGCTGAAATTG
GAACATAAGATGAGGATGAAGATTTCTAAGAAGATACGGCTTCGCAGGAA
GAAGCTTGTTCGTAAACGGAGGATGAGGAAGACGGGTCGATGGCCCCCTT
CGAAGATGAACAAATTAAAGAATGTCTGA

protein sequence of evm.model.HIC_ASM_8.545-csg_v1

>evm.model.HIC_ASM_8.545-csg_v1 ID=evm.model.HIC_ASM_8.545-csg_v1; Name=evm.model.HIC_ASM_8.545-csg_v1; organism=Citrus sinensis; type=polypeptide; length=193bp
MGSKSNMQTAFQSRLGKIKTHLLALFAACCANIQTLLRPARKERAQMALS
LLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFC
DISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKL
EHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV*

mRNA from alignment at HIC_ASM_8:3706899..3709925-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3027bp; location=Sequence derived from: HIC_ASM_8:3706899..3709925- (Citrus sinensis
ATGGGGTCAAAGTCAAACATGCAAACGGCATTCCAATCTCGCCTCGGAAA
AATTAAGACGCATTTGCTTGCTTTATTTGCTGCTTGCTGTGCTAACATCC
AAACTTTGTTGCGACCAGCAAGGAAAGAGAGAGCGCAAATGGCTCTCTCT
CTGCTCTTCTCGAGTCCTCTGTCTTCTTCTTCTTCCTCCATATTTTCCAC
ACCATATTCATCACCTATGGCCTTCACCGCTTCCCCAAGTAAGAACTTTT
CTCTCTCTTTCTTACAATATCACTTTTGACGCTTTTTGTTCCATCTTGAA
AATTGCTTGCTTATTTTTTCCTTCAAAAAGTTCTATAGTTCACATTTTTT
TTCTTCCTCTTTATCATGAGACTAGAAACACTATATATTAGTAGTACTCA
AATGGGATTTTAAGTTTACCAGATTTACCTTCTCTTCTTTGTGTTGTTGT
TCATATATATGTTTGTGTTAAACGGACATTTCCTTTGCAATTGCTCCACA
TTTTGATCTGGGTTATGTCAACGATCACTTCTTTTACTTTGTTTCCTCCT
GGTTATTCCTGAAAAATGCATTTATCAGGAGCTCGGAAGCTTTGCATTTG
AACTATAATGAGTTTATTTTCAAAGTTTTCCCTTTTTCACTTTAATCTCA
AAAGCTGTAATTTCATCTGGGTTTTGTTTGGTTTCAGTTCCCAGGTTGCA
TATGAAATCCATGGGTCATCATCACCTGAAATCCTGCAAAAGTTTTTGTG
ATATCAGTAAGAAGAGAGGTGAATTGATTGTTAAGGTATCTTCTGACGCA
GAAGTTGTGGACAGTGATGAGCCTCAGTCTGAGAGTGATGATGAAGAATA
TTTTCCACTTGAAAAACTGCCATTGGACTCAAAGCTGCAGCTGAAATTGG
AACATAAGATGAGGATGAAGATTTCTAAGAAGATACGGCTTCGCAGGAAG
AAGCTTGTTCGTAAACGGAGGATGAGGAAGACGGGTCGATGGCCCCCTTC
GAAGATGAACAAATTAAAGAATGTCTGACTCTTGACTTGCAGGTTATTAC
TCCGTAGAAATATTTTACTTAACTGCTTGTTTTGCAATTTAATTGTCAGA
TGTTATAGATTTGCAAGTCTATAGTTATCTTTACAGTCATAGCATGTGCA
TTTACTGACCTTTTTTAGCAGTTTCATATAGAAAGATGTAACTTGTAGAC
TGGATTTCTCAGATACCATTGCTACTCATATTTTGTGAGGTTCAAACTTT
GTGTCTGGGAACCTTATATTGAGAACTTGTTTCTTTGCTAAACGAATAAG
TAGTAATTTTTTCGAATATTATGCATATAACATTCAGAAAATGCTTCATT
ATATAATTGAATGATAGTCAGTCTGTCGACTTTGAGAGTAATGAGCTCGT
ATGCTTGAGATACTGGGTATACCTAATGCTAGTGCTAGGACAGTCATGTG
CTCTTTCACTTTCTTGCTGAGAAAGATTGTTCCTTATTCCATTACCATAC
TAGGAGGAGGAGGTTAGTGGACCTTTTGCAAAATTTGGTCAAATATCCAT
GATAAAGTGCAACCTACAATGATCTATCTTCACGCATAAGGAGCCCATGC
AAGTGGTAACAAATCTTACCAGGGACAAGAAAGCAATTAATTGGCAACAA
GAGGGTCAAGCATCGAAATAGGGGTTTGATGGGACTCTGTGAAGCTTAGA
ATCTGCTACACTTTTGTGAAGGACAGCAAGCTCAGAGAAGCTATAAGAGA
TTACTAGTAGGCTTTTTTTAGGCAAACTCTGGTTGTTTAGACTAGCATGT
CATTTTCGGACTTAGCCGCATAGCATTCAGCATCATTGATGGTTAAACCA
TAAGACTGAGTCTGGATGTACAAAAGTAATTTTCTCAACTTGGAGGAAAA
TAAATATAGGCCATATTGAAAGCTTATTACTCCCTCACACACCCAATTTT
CTATTCTAAAAATATCAAACTTTGTTGTTGATGCCAGTACTAGAATTCGT
TGTTATGAAGTAGTTTTATATTTTATTAATAGATATCGTGATGTATGTTA
GTGGCCTTGTACATACATATACATTATTAATCATCTATTTTATTGTTGTC
TTCAATCCAAAACTGTAGTCTACAACCTTATTAGAAAAGTAGTTATGCTA
ACCAATTAAAGATGCACAGAAGACAGGAAGAAATTCTTTTGTTCTTTGTG
AGGAGCATTGATACCTCACTGAAACTTGTACTCAACTCTCTTCCTCCCTT
TTAGAATGGAGAAGCATAGGAGCTTTCTTTTGGTCTTTGTAACAAACTTA
GTTTTATTAGCTTCAGATATTCTGATCCCAGTGGCAAACTACGGAGGACA
ATTTTCTAATAATAGTCTTCTTTATTTCAGCCTAAAAACTATGGGTTATT
ATGTTTTTGGGTTTTGTATATAGATGTTTTGGGTTCATGAATCATGCTTT
GCTGTTTGAAACTGCCGTGAAGTTTTCCCTTTTAACATTTTATAATGTAA
TGTTCGTTGTTCTTTTTTTTTTTCCCCTGAAAGATTATAATGAATGTTCT
GACTGTTGTCCTTACTGTTGTCCTTTTGGTGTGCCAGATTAAACGGATTC
ACATTTCCTCCAGCCAAAGTTCATCCTAGTTCGTGCCGTTTCTCAGTTCA
AAGCACACCTCTCTTTTTGGTTAATTGAAACTGCCTATTAACATAATAAC
ATGTCAAAGACTATTGTGATGCTGCTGTTGGCAACCTTGAATTGGGTTGG
TTTACTTTTGCTCGGATATTTTGGCTGAGGGAGACGTTTCCTGCTACTTA
ATATAGTCAAATGTAAATGTAGTTAATTCTCACTCATGTTGGTTTCTATA
TAGTCAGTTTAACTTGTGAGGATTTACGGCTTACTGCTCAGGCAATACTT
GTGCAATTGCATAGCTTGATTGGTGAAGTTGGAGGTGGGACATTCTTCTT
ATAACTTCATGGATGCCAATCTCTCCTGCTGAACATAGATTGGATGAATA
TATTAAGTGGACGTAATTGCTTTCCCA

Coding sequence (CDS) from alignment at HIC_ASM_8:3706899..3709925-

>evm.model.HIC_ASM_8.545-csg_v1 ID=evm.model.HIC_ASM_8.545-csg_v1; Name=EVM_prediction_HIC_ASM_8.545; organism=Citrus sinensis; type=CDS; length=579bp; location=Sequence derived from: HIC_ASM_8:3706899..3709925- (Citrus sinensis
ATGGGGTCAAAGTCAAACATGCAAACGGCATTCCAATCTCGCCTCGGAAA
AATTAAGACGCATTTGCTTGCTTTATTTGCTGCTTGCTGTGCTAACATCC
AAACTTTGTTGCGACCAGCAAGGAAAGAGAGAGCGCAAATGGCTCTCTCT
CTGCTCTTCTCGAGTCCTCTGTCTTCTTCTTCTTCCTCCATATTTTCCAC
ACCATATTCATCACCTATGGCCTTCACCGCTTCCCCAATTCCCAGGTTGC
ATATGAAATCCATGGGTCATCATCACCTGAAATCCTGCAAAAGTTTTTGT
GATATCAGTAAGAAGAGAGGTGAATTGATTGTTAAGGTATCTTCTGACGC
AGAAGTTGTGGACAGTGATGAGCCTCAGTCTGAGAGTGATGATGAAGAAT
ATTTTCCACTTGAAAAACTGCCATTGGACTCAAAGCTGCAGCTGAAATTG
GAACATAAGATGAGGATGAAGATTTCTAAGAAGATACGGCTTCGCAGGAA
GAAGCTTGTTCGTAAACGGAGGATGAGGAAGACGGGTCGATGGCCCCCTT
CGAAGATGAACAAATTAAAGAATGTCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR040307	Ribosomal_cL37