EVM_prediction_HIC_ASM_8.765
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: V4T1I7|V4T1I7_CITCL (Embryo defective 2735 (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013818mg PE=4 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 1.932e-120 Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNSTSV 170
MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKR KLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPS+LEDLAVAARGGMETLRPALQRVYMTRASAYRD LKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNSTSV
Sbjct: 99 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSMLEDLAVAARGGMETLRPALQRVYMTRASAYRDALKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNSTSV 268
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: V4SRM9|V4SRM9_CITCL (Embryo defective 2735 OS=Citrus clementina OX=85681 GN=CICLE_v10012932mg PE=4 SV=1) HSP 1 Score: 337.035 bits (863), Expect = 1.093e-116 Identity = 162/170 (95.29%), Postives = 165/170 (97.06%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNSTSV 170
MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKR KLTWHERWL+LKEASRLYGASWVRDIGPD RPNDYKKDNDDVNAREDANQPTA+KPKEPSVL DLAVAARGGMETLRPALQRVYMTRASAYRD LKSFIEGYQEGIQQVMEKKD S+TQAQQEGNDPKNSTSV
Sbjct: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERWLMLKEASRLYGASWVRDIGPDFRPNDYKKDNDDVNAREDANQPTANKPKEPSVLVDLAVAARGGMETLRPALQRVYMTRASAYRDALKSFIEGYQEGIQQVMEKKDSSRTQAQQEGNDPKNSTSV 170
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A067KJ85|A0A067KJ85_JATCU (Embryo defective 2735 OS=Jatropha curcas OX=180498 GN=JCGZ_08826 PE=4 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 1.270e-90 Identity = 131/168 (77.98%), Postives = 146/168 (86.90%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MK+KVVCRKVYDY+RYDLKEIAFPSSLPDPPH+KKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKK +++ R + T+ + KEPSV EDLAVAARGGMETLRPALQRVYMTRASAYRD LKSFIEGYQEGIQQVMEKK+ +K+ +QE + P ST
Sbjct: 1 MKLKVVCRKVYDYVRYDLKEIAFPSSLPDPPHLKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKKDEESEDRSNGTTRTSTEGKEPSVFEDLAVAARGGMETLRPALQRVYMTRASAYRDALKSFIEGYQEGIQQVMEKKEEAKS--KQENDTPNKST 166
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A9D4A5D1|A0A9D4A5D1_9ROSI (Embryo defective 2735 OS=Gossypium stocksii OX=47602 GN=J1N35_017596 PE=4 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 4.191e-90 Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + D ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTEGKSDGDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTGKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A6P6AQB7|A0A6P6AQB7_DURZI (Uncharacterized protein LOC111311682 OS=Durio zibethinus OX=66656 GN=LOC111311682 PE=4 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.087e-89 Identity = 136/172 (79.07%), Postives = 144/172 (83.72%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPK----EPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD E +P+ DK + EPS LED+AVAARGGMETL+P LQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ SK AQQEG K ST
Sbjct: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKDE------ESEGKPSGDKSRTKEAEPSTLEDIAVAARGGMETLKPVLQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDSK--AQQEGKTQKTST 164
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A5D2XYI1|A0A5D2XYI1_GOSMU (Embryo defective 2735 OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G152700v1 PE=4 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.724e-89 Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + + ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTEGKSNGDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTDKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A1U8IFN6|A0A1U8IFN6_GOSHI (Uncharacterized protein LOC107896328 OS=Gossypium hirsutum OX=3635 GN=LOC107896328 PE=4 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.724e-89 Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + + ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTEGKSNGDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTDKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A8J5YSG5|A0A8J5YSG5_9ROSI (Embryo defective 2735 OS=Gossypium anomalum OX=47600 GN=CXB51_023530 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 2.732e-89 Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + + ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTECKSNGDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTDKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A5D2F9U8|A0A5D2F9U8_GOSDA (Embryo defective 2735 OS=Gossypium darwinii OX=34276 GN=ES288_A09G172800v1 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.221e-89 Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + + ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTEGKSNRDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTDKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Match: A0A5J5UHN5|A0A5J5UHN5_GOSBA (Embryo defective 2735 OS=Gossypium barbadense OX=3634 GN=ES319_A09G151500v1 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.221e-89 Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MKVKVVCRK+YDY+RYDLKEIAFPSSLPDPPHIKKR KLTWHER+LVLKEASRLY ASWVRDIGPDLRPNDYKKD D + + ++ + + EPS LED+AVAARGGMETLRPALQR+YMTRASAYRD LKSFIEGYQEGIQQVMEKK+ S ++AQQEGN KNS
Sbjct: 1 MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKKD-DGTEGKSNRDKSRSTET-EPSALEDIAVAARGGMETLRPALQRLYMTRASAYRDALKSFIEGYQEGIQQVMEKKEDS-SKAQQEGNTDKNSA 165
BLAST of EVM_prediction_HIC_ASM_8.765 vs. Araport11
Match: | (Symbols: emb2735 | embryo defective 2735 | chr5:1888380-1889512 FORWARD LENGTH=162) HSP 1 Score: 221.861 bits (564), Expect = 7.814e-75 Identity = 113/168 (67.26%), Postives = 128/168 (76.19%), Query Frame = 0 Query: 1 MKVKVVCRKVYDYIRYDLKEIAFPSSLPDPPHIKKRCKLTWHERWLVLKEASRLYGASWVRDIGPDLRPNDYKKDNDDVNAREDANQPTADKPKEPSVLEDLAVAARGGMETLRPALQRVYMTRASAYRDGLKSFIEGYQEGIQQVMEKKDGSKTQAQQEGNDPKNST 168
MK+KVV RKV DYI YDLKEI PSSLPDPPH+ KR KLTWHER+LVLKEASRLY ASWVRDIGP+LRPNDYKK D + + + EPSVLEDLAVAARGGMETLRPAL R+YMTRAS Y+D L SFI+GY EG+QQVM+ K S+ A E + K +T
Sbjct: 1 MKLKVVYRKVSDYICYDLKEIVLPSSLPDPPHVVKRRKLTWHERFLVLKEASRLYAASWVRDIGPELRPNDYKKQGD-----AEPKKQAKEAENEPSVLEDLAVAARGGMETLRPALHRLYMTRASNYKDALTSFIKGYHEGLQQVMQNKAESEAPA-DEADKSKKTT 162 The following BLAST results are available for this feature:
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Analysis Date: 2024-01-25 (Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of EVM_prediction_HIC_ASM_8.765 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_HIC_ASM_8.765 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Citrus sinensis cv. Gannanzao v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Gannanzao v1.0 proteins
Date Performed: 2024-01-25 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.HIC_ASM_8.765-csg_v1 ID=evm.model.HIC_ASM_8.765-csg_v1; Name=EVM_prediction_HIC_ASM_8.765; organism=Citrus sinensis; type=mRNA; length=513bpback to top protein sequence of evm.model.HIC_ASM_8.765-csg_v1 >evm.model.HIC_ASM_8.765-csg_v1 ID=evm.model.HIC_ASM_8.765-csg_v1; Name=evm.model.HIC_ASM_8.765-csg_v1; organism=Citrus sinensis; type=polypeptide; length=171bpback to top mRNA from alignment at HIC_ASM_8:5401821..5403741+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1921bp; location=Sequence derived from: HIC_ASM_8:5401821..5403741+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at HIC_ASM_8:5401821..5403741+ >evm.model.HIC_ASM_8.765-csg_v1 ID=evm.model.HIC_ASM_8.765-csg_v1; Name=EVM_prediction_HIC_ASM_8.765; organism=Citrus sinensis; type=CDS; length=513bp; location=Sequence derived from: HIC_ASM_8:5401821..5403741+ (Citrus sinensisback to top |