g15666.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QXA1|A0A2H5QXA1_CITUN (50S ribosomal protein L9, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_267960 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.406e-54 Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 0 Query: 1 MQLHIRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
MQLHIRKSEDNTSREFEKA RRLENARLVLRRFPNIEKL A KDD LE RSPVTKEELVAEVARQLSISI PENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 1 MQLHIRKSEDNTSREFEKAARRLENARLVLRRFPNIEKLHSRALKDDPLEWRSPVTKEELVAEVARQLSISIAPENLHLPSPLSTFGEYEVPMRLPKAI 99
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QWD2|A0A2H5QWD2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_267950 PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.531e-53 Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 0 Query: 1 MQLHIRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
MQLHIRKSEDNTSREFEKA RRLENARLVLRRFPNIEKL A KDD LE RSPVTKEELVAEVARQLSISI PENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 1 MQLHIRKSEDNTSREFEKAARRLENARLVLRRFPNIEKLHSRALKDDPLEWRSPVTKEELVAEVARQLSISIAPENLHLPSPLSTFGEYEVPMRLPKAI 99
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067EC40|A0A067EC40_CITSI (50S ribosomal protein L9, chloroplastic OS=Citrus sinensis OX=2711 GN=CISIN_1g032091mg PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.890e-51 Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 35 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|V4TQS8|V4TQS8_CITCL (Large ribosomal subunit protein bL9c OS=Citrus clementina OX=85681 GN=CICLE_v10022175mg PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.036e-50 Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELR+PVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 106 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRAPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 200
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067DDH9|A0A067DDH9_CITSI (Large ribosomal subunit protein bL9c OS=Citrus sinensis OX=2711 GN=CISIN_1g038179mg PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.461e-49 Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRF NIEKL ASKDD +ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 109 IRKSEDNMSREFEKAARRLENARLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 203
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067DHI3|A0A067DHI3_CITSI (Large ribosomal subunit protein bL9c OS=Citrus sinensis OX=2711 GN=CISIN_1g027812mg PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.940e-47 Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL SKD +ELRSPVTKEELVAEV+RQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 106 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 200
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QPC3|A0A2H5QPC3_CITUN (Large ribosomal subunit protein bL9c (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_249040 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 6.653e-47 Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELRSPVTKEELV EVARQLS SIEPENLHLPSPLS F +YEVPMRLPKAI
Sbjct: 89 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVVEVARQLSFSIEPENLHLPSPLSAFREYEVPMRLPKAI 183
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QI31|A0A2H5QI31_CITUN (Large ribosomal subunit protein bL9c (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_232150 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 1.079e-46 Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 192 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 286
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QI11|A0A2H5QI11_CITUN (Large ribosomal subunit protein bL9c (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_232150 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 1.207e-46 Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 192 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 286
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5QI02|A0A2H5QI02_CITUN (50S ribosomal protein L9, chloroplastic (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_232150 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 1.662e-46 Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 5 IRKSEDNTSREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
IRKSEDN SREFEKA RRLENARLVLRRFPNIEKL ASKDD +ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS FG+YEVPMRLPKAI
Sbjct: 160 IRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 254
BLAST of g15666.t1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:21518837-21520167 FORWARD LENGTH=221) HSP 1 Score: 98.2117 bits (243), Expect = 1.474e-26 Identity = 45/87 (51.72%), Postives = 67/87 (77.01%), Query Frame = 0 Query: 13 SREFEKATRRLENARLVLRRFPNIEKLCCCASKDDLLELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSPFGKYEVPMRLPKAI 99
++E+EKA +RL NA LVLR+ + EK +SKDD ++++P+TKEE+V+EVARQL + I+P+N+ L +PL FG+YEVP++ PK I
Sbjct: 117 TKEYEKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKIDPDNVVLAAPLETFGEYEVPLKFPKTI 203 The following BLAST results are available for this feature:
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-16 (Blastp of Citrus australasica cv. Rainbow v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of g15666.t1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-16 (Blastp of Citrus australasica cv. Rainbow v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of g15666.t1 vs. Araport11
Analysis Date: 2024-08-16 (Blastp of Citrus australasica cv. Rainbow v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus australasica cv. Rainbow v1.0 proteins
Date Performed: 2024-08-16 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCitAust.Rainbow.1.0.H1.g15666.t1 ID=drCitAust.Rainbow.1.0.H1.g15666.t1; Name=g15666.t1; organism=Citrus australasica; type=mRNA; length=318bpback to top protein sequence of drCitAust.Rainbow.1.0.H1.g15666.t1 >drCitAust.Rainbow.1.0.H1.g15666.t1 ID=drCitAust.Rainbow.1.0.H1.g15666.t1; Name=drCitAust.Rainbow.1.0.H1.g15666.t1; organism=Citrus australasica; type=polypeptide; length=105bpback to top mRNA from alignment at Chr05.H1:11251512..11252696+ Legend: start_codonCDSexonpolypeptideintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1185bp; location=Sequence derived from: Chr05.H1:11251512..11252696+ (Citrus australasicaback to top Coding sequence (CDS) from alignment at Chr05.H1:11251512..11252696+ >drCitAust.Rainbow.1.0.H1.g15666.t1 ID=drCitAust.Rainbow.1.0.H1.g15666.t1; Name=g15666.t1; organism=Citrus australasica; type=CDS; length=318bp; location=Sequence derived from: Chr05.H1:11251512..11252696+ (Citrus australasicaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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