hap2-g10148.t1 | Citrus Genome Database

Transcript Overview


Name	hap2-g10148.t1
Unique Name	hap2-g10148.t1_Cg-UQ_v1
Type	mRNA
Organism	Citrus glauca (Australian desert lime)
Sequence length	354

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus glauca genome v1.0 (UQ)	2024-01-23
InterProScan Analysis for Citrus glauca UQ v1.0 proteins	2024-10-02
Blastp of Citrus glauca UQ v1.0 proteins vs UniProt TrEMBL	2024-10-02
Blastp of Citrus glauca UQ v1.0 proteins vs UniProt Swissprot	2024-10-02
Blastp of Citrus glauca UQ v1.0 proteins vs Araport11	2024-10-02

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cgucguL022	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucguL081	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucguR373	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
hap1-g10039.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
hap2-g10148	hap2-g10148_Cg-UQ_v1	Citrus glauca	gene

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1.start1	hap2-g10148.t1.start1_Cg-UQ_v1	Citrus glauca	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1.CDS1	hap2-g10148.t1.CDS1_Cg-UQ_v1	Citrus glauca	CDS
hap2-g10148.t1.CDS2	hap2-g10148.t1.CDS2_Cg-UQ_v1	Citrus glauca	CDS
hap2-g10148.t1.CDS3	hap2-g10148.t1.CDS3_Cg-UQ_v1	Citrus glauca	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1.exon1	hap2-g10148.t1.exon1_Cg-UQ_v1	Citrus glauca	exon
hap2-g10148.t1.exon2	hap2-g10148.t1.exon2_Cg-UQ_v1	Citrus glauca	exon
hap2-g10148.t1.exon3	hap2-g10148.t1.exon3_Cg-UQ_v1	Citrus glauca	exon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1.intron1	hap2-g10148.t1.intron1_Cg-UQ_v1	Citrus glauca	intron
hap2-g10148.t1.intron2	hap2-g10148.t1.intron2_Cg-UQ_v1	Citrus glauca	intron

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1.stop1	hap2-g10148.t1.stop1_Cg-UQ_v1	Citrus glauca	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
hap2-g10148.t1_Cg-UQ_v1	hap2-g10148.t1_Cg-UQ_v1	Citrus glauca	polypeptide
hap2-g10148.t1_Cg-UQ_v1	hap2-g10148.t1_Cg-UQ_v1-protein	Citrus glauca	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of hap2-g10148.t1 vs.
BLAST of hap2-g10148.t1 vs.
BLAST of hap2-g10148.t1 vs.

BLAST of hap2-g10148.t1 vs.
Analysis Date: 2024-10-02 (Blastp of Citrus glauca UQ v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of hap2-g10148.t1 vs.
Analysis Date: 2024-10-02 (Blastp of Citrus glauca UQ v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of hap2-g10148.t1 vs.
Analysis Date: 2024-10-02 (Blastp of Citrus glauca UQ v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at hap2-C.glau_04:4412570..4413099+
coding sequence from alignment at hap2-C.glau_04:4412570..4413099+

mRNA sequence

>hap2-g10148.t1_Cg-UQ_v1 ID=hap2-g10148.t1_Cg-UQ_v1; Name=hap2-g10148.t1; organism=Citrus glauca; type=mRNA; length=354bp
ATGAAAAAGCAAAAGGCAACAGTTGATTTGCAACAGTATTCTACCAACTC
AATTGAAATTCGTCGTGCGGGTGGAGATCATCTGTTTCCCGAGATATGCC
CGACCCAGCACATAAAACGTTGCCGTTCAAATGCTGACAAATGGCACTTC
AACTCGAACCAGTCATCCTCGTCCAATCGTTCGAAAGACTATATTACCCT
TAATCCACGCATTAATTGGGACTACGGATCACTCCGTCACAACCAGCAGC
GTCGATTCAAACTGAATAAGCCACTTCGATTAAGTCCAGGCGAGCTTAAG
CGTTCAATTTTTATCGTAAAATCACATAGATGGCCTCAACGATGCTTTCA
ATAG

protein sequence of hap2-g10148.t1_Cg-UQ_v1

>hap2-g10148.t1_Cg-UQ_v1 ID=hap2-g10148.t1_Cg-UQ_v1; Name=hap2-g10148.t1_Cg-UQ_v1; organism=Citrus glauca; type=polypeptide; length=118bp
MKKQKATVDLQQYSTNSIEIRRAGGDHLFPEICPTQHIKRCRSNADKWHF
NSNQSSSSNRSKDYITLNPRINWDYGSLRHNQQRRFKLNKPLRLSPGELK
RSIFIVKSHRWPQRCFQ*

mRNA from alignment at hap2-C.glau_04:4412570..4413099+

Legend: start_codonCDSexonpolypeptideintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=530bp; location=Sequence derived from: hap2-C.glau_04:4412570..4413099+ (Citrus glauca
ATGAAAAAGCAAAAGGCAACAGTTGATTTGCAACAGTATTCTACCAACTC
AATTGAAATTCGTCGTGCGGGTGGAGATCATCTGTTTCCCGAGATATGCC
CGACCCAGCACATAAAACGTTGCCGTTCAAATGCTGACAAATGGCACTTC
AACTCGAACCAGTCATCCTCGTCCAATCGTTCGAAAGACTATATTACCCT
TAATCCACGCATTAATTGGGACTACGGATCACTCCGTCACAACCAGCAGC
GTCGATTCAAACGTACTTGTTGCTCCATAGCAAGGAGATAGCACACGCAC
AGCTTCGTAATAGTCGCCATTTTCTTGTGAAATCTCTTTACCATCAGTGA
ATAAGCCACTTCGATTAAGTCCAGGCGAGCTTAAGCGTTCAATTTTTATC
GTAAAATCACGTAATATTTTATCTCATTTGATTTACTAGTAAATTTTTCA
TATTCATCATCAACTCGTCATTTAACTGTTTATGCGTAATTGTTGATCCA
GATAGATGGCCTCAACGATGCTTTCAATAG

Coding sequence (CDS) from alignment at hap2-C.glau_04:4412570..4413099+

>hap2-g10148.t1_Cg-UQ_v1 ID=hap2-g10148.t1_Cg-UQ_v1; Name=hap2-g10148.t1; organism=Citrus glauca; type=CDS; length=354bp; location=Sequence derived from: hap2-C.glau_04:4412570..4413099+ (Citrus glauca
ATGAAAAAGCAAAAGGCAACAGTTGATTTGCAACAGTATTCTACCAACTC
AATTGAAATTCGTCGTGCGGGTGGAGATCATCTGTTTCCCGAGATATGCC
CGACCCAGCACATAAAACGTTGCCGTTCAAATGCTGACAAATGGCACTTC
AACTCGAACCAGTCATCCTCGTCCAATCGTTCGAAAGACTATATTACCCT
TAATCCACGCATTAATTGGGACTACGGATCACTCCGTCACAACCAGCAGC
GTCGATTCAAACTGAATAAGCCACTTCGATTAAGTCCAGGCGAGCTTAAG
CGTTCAATTTTTATCGTAAAATCACATAGATGGCCTCAACGATGCTTTCA
ATAG