hap1-g2533.t1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Match: tr|V4RVG1|V4RVG1_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026590mg PE=4 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 1.519e-115 Identity = 166/180 (92.22%), Postives = 169/180 (93.89%), Query Frame = 0 Query: 1 MVGEMDQSWINNDAATVAPKENGACQKQQINTHANEDCKGGTDQAEARADTVKDSPESNDGRDIRDFDLNIPLPGLGGGSDYYGNFKVKFPPPGQEIIDVSSSSPEIFEPPTSKALVRDQESGSGSNGAVIKMSTGALDNVNVPFIDLAGSIYLSDETDEDSSPRSKKLKITHGSKDQDN 180 M GEMD+SWINNDAATVAPKENGACQKQQINT ANEDCK GTDQAEARADTVKDSPESNDGR+IRDFDLNIPLPGLGGGSDYYGN KVKFPPP QEIID+S SSPEIFEPPTSKALV DQESGSGSNGAVIKM T ALDNVNVP IDLAGSIYLSDETDEDSSPRSKKLKIT GSKDQDN Sbjct: 1 MEGEMDESWINNDAATVAPKENGACQKQQINTPANEDCKSGTDQAEARADTVKDSPESNDGRNIRDFDLNIPLPGLGGGSDYYGNVKVKFPPPEQEIIDLSGSSPEIFEPPTSKALVSDQESGSGSNGAVIKMPTQALDNVNVPLIDLAGSIYLSDETDEDSSPRSKKLKITDGSKDQDN 180
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5PZM1|A0A2H5PZM1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_182150 PE=4 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 9.571e-101 Identity = 150/180 (83.33%), Postives = 158/180 (87.78%), Query Frame = 0 Query: 1 MVGEMDQSWINNDAATVAPKENGACQKQQINTHANEDCKGGTDQAEARADTVKDSPESNDGRDIRDFDLNIPLPGLGGGSDYYGNFKVKFPPPGQEIIDVSSSSPEIFEPPTSKALVRDQESGSGSNGAVIKMSTGALDNVNVPFIDLAGSIYLSDETDEDSSPRSKKLKITHGSKDQDN 180 M G MDQSWINNDAATVAPKENGACQKQ++ NED + GTDQAEARADTVKDS ESNDGR+IRDFDLNIPLPGLGGGSDY GN KVKFPPP QEIID+S SSPEI EPPTSKALV DQE GS SNGAVIKMST AL+NVNV IDLAGSIYLSD+ D+DSSPRSKKLKIT GSKDQDN Sbjct: 1 MEGGMDQSWINNDAATVAPKENGACQKQRVIRMQNEDWQSGTDQAEARADTVKDSSESNDGRNIRDFDLNIPLPGLGGGSDYCGNVKVKFPPPEQEIIDLSGSSPEILEPPTSKALVSDQECGSDSNGAVIKMSTRALNNVNVSLIDLAGSIYLSDKADDDSSPRSKKLKITDGSKDQDN 180
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067G6F2|A0A067G6F2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0129731mg PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 5.750e-95 Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0 Query: 27 KQQINTHANEDCKGGTDQAEARADTVKDSPESNDGRDIRDFDLNIPLPGLGGGSDYYGNFKVKFPPPGQEIIDVSSSSPEIFEPPTSKALVRDQESGSGSNGAVIKMSTGALDNVNVPFIDLAGSIYLSDETDEDSSPRSKKLKITHGSKDQDN 180 KQQ NTHANEDCK GTDQAEARADTVKDSPESNDGR+IRDFDLNIPLPGLGGGSDYYGN KVKFPPP QEIID+S SSPEIFE PTSKALV DQESGSGSNGAVIKM T ALDNVNVP IDLAGSIYLSDETDEDSSPRSKKLKIT GSKDQDN Sbjct: 1 KQQFNTHANEDCKSGTDQAEARADTVKDSPESNDGRNIRDFDLNIPLPGLGGGSDYYGNVKVKFPPPEQEIIDLSGSSPEIFELPTSKALVSDQESGSGSNGAVIKMPTQALDNVNVPLIDLAGSIYLSDETDEDSSPRSKKLKITDGSKDQDN 154 The following BLAST results are available for this feature:
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt TrEMBL) Total hits: 3 Position : 0 Zoom : x 1
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of hap1-g2533.t1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-10-02 (Blastp of Citrus garrawayi UQ v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >hap1-g2533.t1_Cgarrawayi-UQ_v1 ID=hap1-g2533.t1_Cgarrawayi-UQ_v1; Name=hap1-g2533.t1; organism=Citrus garrawayi; type=mRNA; length=543bpback to top protein sequence of hap1-g2533.t1_Cgarrawayi-UQ_v1 >hap1-g2533.t1_Cgarrawayi-UQ_v1 ID=hap1-g2533.t1_Cgarrawayi-UQ_v1; Name=hap1-g2533.t1_Cgarrawayi-UQ_v1; organism=Citrus garrawayi; type=polypeptide; length=181bpback to top mRNA from alignment at hap1-C.garr_01:27604443..27605473+ Legend: start_codonCDSexonpolypeptideintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1031bp; location=Sequence derived from: hap1-C.garr_01:27604443..27605473+ (Citrus garrawayiback to top Coding sequence (CDS) from alignment at hap1-C.garr_01:27604443..27605473+ >hap1-g2533.t1_Cgarrawayi-UQ_v1 ID=hap1-g2533.t1_Cgarrawayi-UQ_v1; Name=hap1-g2533.t1; organism=Citrus garrawayi; type=CDS; length=543bp; location=Sequence derived from: hap1-C.garr_01:27604443..27605473+ (Citrus garrawayiback to top |