orange1.1g000539m.v1.1, orange1.1g000539m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: CHR28_ARATH (Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1) HSP 1 Score: 877.085 bits (2265), Expect = 0.000e+0 Identity = 475/854 (55.62%), Postives = 601/854 (70.37%), Query Frame = 1 Query: 1795 SVALGKPVVTSQHSSYSDYPGYPGVPL--TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE-RPPSFRTEDDNKRQLETLNLDEED--------------NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 4299
SVA G S + SD P+ G+G ++ +DERLI Q A+Q ++QP +E P G+L+VPL++HQ+IAL+WM QKET+SLHC GGILADDQGLGKT+STIALILK+ ++++ ++ E L+LD +D NG VNG +K+ + +S + FN + RPAAGTL+VCP SV+RQWA EL KVT + LSVL+YHG +RTKDP ELAK+DVV+TTY+IVS EVPKQPL +DE ++ E L + + K++ ++ + K+ G D +G LAKVGWFRVVLDEAQ+IKNHRTQVARAC GLRAKRRWCLSGTPIQN IDDLYSYFRFL+YDP+AVYKSFC IK PIS+N ++GYKKLQAVL+ IMLRRTKGTLLDG+PIINLPPK I L QVDF+ EER FY +LE +SR QFK YAAAGT+ QNY NILLMLLRLRQACDHP LVK ++S+S+ + S E KKLP+E + LL+ LE+S IC +C+DPPED VV++CGH+FC QC+ + +T D++ CP C+ +L+ VFSK+TL + ++ G D S K V + ++SSKIKA L++LQSL+ N T++S + NG + + D D+++ I K S+ S G K I+FSQWT MLDL+E SL ++SI++RRLDGTMS+ ARD+AVK+F+ P+V VMIMSLKA +LGLNM+AACHV+LLDLWWNPTTEDQAIDRAHRIGQTRPV+V R+T+KNTVEDRILALQ++KR+MVASAFGED G TRLTVDDL YLFMV
Sbjct: 163 SVAHGTSASPSHFNGLSD-------PMHRNGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKK----AKGEEASTSTRKFN-----RKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPL-VDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVKKLPKEDLVSLLSRLESS-PICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKSTLRSCVAD-DLGCSSSEDNSHDKSV----FQNGEFSSSKIKAVLDILQSLS----NQGTSNSTQ---NGQMASSSQQPNDDDDDDDDDVT-----IVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRLTVDDLKYLFMV 981
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: CHR27_ARATH (Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1) HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0 Identity = 443/834 (53.12%), Postives = 575/834 (68.94%), Query Frame = 1 Query: 1870 PLTGLGGMKSKA--SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNKRQLETLNLD---EEDNGIQVNGLDL-----VKQESDYCRVVPNGSSAKSFNFVEQAKG-------------RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 4299
P+ GG + + +DERL+ Q A+Q ++QP E+ P G L+VPL+RHQ+IAL+WM QKETSS +C GGILADDQGLGKT+STIALILK++ S ++E K++ E L LD E DN +G + V S+ + G+ + +E+A+ RPAAGTL+VCP SV+RQWA EL KV+ + LSVLVYHGS+RTKDP ELA++DVV+TTY+IV+ E P + L EDE ++ + L + ++ K++ +S + + +K + + GPL KVGWFR+VLDEAQ+IKN+RTQ+AR+C LRAKRRWCLSGTPIQN IDDLYSYFRFLRYDP+AVYKSF S IKVPIS+N +GYKKLQAVL+ IMLRRTKGTLLDG+PIINLPPKV+ L QVDF+ ER FY +LE +SR QFK YA AGT+ QNY NILL+LLRLRQACDHP LVK ++S+ + + S ++LP+E + L+N LE+S AIC CN+PPE VV++CGH+FC +C+ E +T D+N CP CK +L+ VFS+++L N S + D + + + SSKIKA L++LQSL++P + +S +H S P D +D+ + + + S G K I+FSQWT MLDL+E + +S I++RRLDGTMS+ ARD+AVK+F+ P+V VM+MSLKA +LGLNMVAACHV+LLDLWWNPTTEDQAIDRAHRIGQTRPV+V R+T+K+TVEDRIL LQ++KR MVASAFGE+ G TRLTVDDL YLFMV
Sbjct: 236 PMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNEAPNKFL-VDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLVKRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVFQKRD-----FCSSKIKAVLDILQSLSQPD----SPNSAQHGQMPSSSRPYDDDDVTIVEPM------------RLHSSSPSQGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATRLTVDDLKYLFMV 1047
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: RAD16_YEAST (DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 3.622e-87 Identity = 216/699 (30.90%), Postives = 318/699 (45.49%), Query Frame = 1 Query: 2338 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGP--LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS----------------------------------MIKVPISKNPVKG-----YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI---CERLTADDNQ--CPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD-YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++ KQ G ++K G + P L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL +PF Y FC+ M+K I K V+G + +Q +LK IMLRRTK D + LPP+++ +++ F +EE+D Y L +S+ ++ + G V NY NI ++ R+RQ DHP LV ++ P + + + IC +CND E+ + S C H FC CI E ++N+ CP C I LS+ LSQ P E+ D + +V + G W +S+KI+A +E L K R N T K+IVFSQ+T MLDL+E LK + Q +L G+MS RD+ +K F + V ++SLKA + LN+ A V +LD WWNP+ E Q+ DR HRIGQ RPV + R +++++E RI+ LQ+KK M+ + +DE +RLT DL +LF
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVFRKQNYGF-------------------------------------RRKNG-------LFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKY--FCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLK-NIQKFGVEGPGLESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV------------LKRLNNFPGD---------DIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPV--CHIGLSID-----------LSQ--PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVE---ELYKLRSNKRT--------------------------------------------------IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQDEAAI--SRLTPADLQFLF 788
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC23E6.02 PE=3 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 7.513e-87 Identity = 200/668 (29.94%), Postives = 339/668 (50.75%), Query Frame = 1 Query: 2338 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF-----DSNSLLRSSVEMAKKLPQE--RQMYLLNCLEASLAICGICNDPPEDAVVSI-CGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L +D+V+TTY++++ E + S + P + P + W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+QN +++ YS +FLR P++ + SF +P+S N K+ + +LK ++LRRTK T +DG+PI+ LPPK + + D + E +FY+ L+ ++ Q ++Y GT+ +Y ++L++LLRLRQAC HP L+ D++S + + ++ E ++ L+ L+ C +C D + ++ + CGH C +C+ +T+ ++ Q N + S+ + ++ L+ +L +R G P +D+KL E + S I ++ + + T+ + + N ++I K D I ++FSQ+ L+L + I+Y G +S R++A+ +F P V V+++SLKA ++GLN+ A HV++LD +WNP E+QA+DRAHRIGQ +PV++LR+ NT+E+R+LALQ +KRE++ SA GE + + +RL +L++LF
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNK-----------------------------------MAYDKSIEDNAP---IKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----CSLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGM-APIVDADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNAV-----------------------KEIIKKQPTDKI-------LIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGE-KGLREISRLNTKELSFLF 1035
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17A2.12 PE=3 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 2.309e-86 Identity = 239/791 (30.21%), Postives = 350/791 (44.25%), Query Frame = 1 Query: 1987 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK----GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK--GFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG--------------GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
L V LL HQ +WM E SS C GG++ADD GLGKT IQ L L ++ D R L+V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E+ + D PP A L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR P+ V+ F I P+ K+L+ +L + + RRTK T ++ PI+NLPPK I V+ EER Y++ +++ Y Y +L+ LLRLRQ C HP LVK D++ +R S + + + C +C DP V I CGH C +C+ + GQ+ + + + + + P C G S + A +LQ++ P + L N S +S L + +D + + A S KL EK +V+SQ+++ L L+ LK +I++ R DGTMS R K++ FN +V VM++SLKA S+GLN+ A HV+L + ++NP+ EDQAIDR HR+GQ +PV+V R K+T+E+RI+++Q+KKR++V A +E +RL ++L YLF
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKT------------------------------------IQTIALLLTQKSQDPLR----------------------KTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYEMKQN------DAFNNNNPATATPPP----------------------------------ACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLV------------------------------------GQKYGSSSTSTIIAKCPMCRGNIVQDSLVDAT--ILQAIHGPLNSL---KQLELDMNQSF-SEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNE-NNPLSRLDKEELLYLF 893
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: RAD5_CRYNJ (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RAD5 PE=3 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 1.578e-82 Identity = 236/793 (29.76%), Postives = 357/793 (45.02%), Query Frame = 1 Query: 2047 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-----------------FDSNSLLRSSVEM-----AKKLPQE-RQMYLLNCL-----EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNC------KIRLS-LSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN-TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
TS GGILAD G+GKT +LI +E P+ E + +E +DEE ++ + S+ R VP +SF P A TLVVCP S+ QW +ELR K++ +GS++ V++G R LA + DV++T+Y ++ E K +K + +G G L + R+VLDEA +I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S + VP K +Q +L++ +LRR K DG I++LPPK + +K + F+ ER Y LE ++ +F + A G NY +IL ML++LRQ DHPLLV G + LR + M + P++ + Y L + IC +C++ D V+ C H C CI E + ++Q +C I+L+ L SV + N ++ PG P +K++ + +L K + VT+ LR L+ I E+ K KA+VFSQ+T LDL+EA+L I++ R DGTMS R +++F E ++++SLKA +GLN+ A +V L+D WWN E QAIDR HR+GQ +PV V R +K TVE RI+ +Q+ K +V ++ G + T+ D+ +F
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKRIKFKQVTL--SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR-KMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW--------------------------------------LRTKDRPNYEG-------GSLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPGGRDPN----------------------LKSSNDTTVTLGKV--DLVTSTKLRALLR----------------QLEEIRQEDPKA--------------KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS---NGAKTKETTLADIKKIF 1186
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: RAD5_CRYNB (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RAD5 PE=3 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 1.794e-82 Identity = 237/793 (29.89%), Postives = 354/793 (44.64%), Query Frame = 1 Query: 2047 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-----------------FDSNSLLRSSVEM------AKKLPQERQMYLLNCL-----EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNC------KIRLS-LSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN-TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
TS GGILAD G+GKT +LI +E P+ E + +E +DEE ++ + S+ R VP +SF P A TLVVCP S+ QW +ELR K++ +GS++ V++G R LA + DV++T+Y ++ E K +K + +G G L + R+VLDEA +I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S + VP K +Q +L++ +LRR K DG I++LPPK + +K + F+ ER Y LE ++ +F E A G NY +IL ML++LRQ DHPLLV G + LR + M A+ + Y L + IC +C++ D V+ C H C CI E + ++Q +C I+L+ L SV + N ++ PG P K++ + +L K + VT+ LR L+ I E+ K KA+VFSQ+T LDL+EA+L I++ R DGTMS R +++F E ++++SLKA +GLN+ A +V L+D WWN E QAIDR HR+GQ +PV V R +K TVE RI+ +Q+ K +V ++ G + T+ D+ +F
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKRIKFKQVTL--SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR-KMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW--------------------------------------LRTKDRPNYEG-------GSLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPGGRDPNS----------------------KSSNDTTVTLGKV--DLVTSTKLRALLR----------------QLEEIRQEDPKA--------------KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS---NGAKTKETTLADIKKIF 1186
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: SM3L2_ARATH (DNA repair protein RAD5A OS=Arabidopsis thaliana OX=3702 GN=RAD5A PE=1 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 5.151e-82 Identity = 188/546 (34.43%), Postives = 278/546 (50.92%), Query Frame = 1 Query: 2713 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK-GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV-------KGFDSNSLLR-------SSVEM-AKKLPQER--QMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 4293
V WFR+VLDEA +IKN ++Q++ A L A RRWCL+GTPIQN ++DLYS RFLR +P+ + + +++ P + +G K +Q++LK IMLRRTK T +G PI+ LPP + + ++ ERDFY L S+ +F ++ G V NY +IL +LLRLRQ CDHP LV + D N L + S +E K +P E Q + + C IC + EDAV++ C H C +C+ + CP C+ N++S+ QE+ T ++S+ E W SSKI A LE L+ LR S + SI +FSQWT LDLL+ L ++ + RLDGT+S R+K +K+F+ + V++MSLKA +G+N+ AA + ++D WWNP E+QA+ R HRIGQT+ V + R VK TVE+R+ A+Q +K+ M++ A + E + +++L LF
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPV--CR---------------NTVSK----QELITAPTESRF--QVDVEKNWVESSKITALLEELE-------------GLRSSGSKSI------------------------------------------LFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSAR----IEELKMLF 1028 HSP 2 Score: 70.0922 bits (170), Expect = 1.528e-10 Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 1 Query: 2068 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNF----VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ 2529
GGILAD GLGKT+ TI+L+L + T L + E + + + +D + P + K F +EQ G L+VCP ++L QW E+ GSLSV V++G SR KD L++ DVVITTY +++ E ++
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTG--------FLCPNYEGDKVISSSVDDLTS--------PPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQE 554
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 9.151e-72 Identity = 166/516 (32.17%), Postives = 253/516 (49.03%), Query Frame = 1 Query: 2701 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVKGFDSN--SLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 4233
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+ PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + + ++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL SN S + E+ KKL ++ ++ L + S C IC D V++ C HVFC CIC+ + N+ P C + + ++ P +E+ D +E W +SSKI A + L L K N K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F S +M++SLKA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L +Q KKRE+ A AFG
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSS---GSDEECAICLDSLTVPVITHCAHVFCKPCICQVI---QNEQPHAKCPL--------CRNDIHEDNLLECPPEELARDSEKKSDME-------WTSSSKINALMHALTDLRKKNPNI-----------------------------------------------------KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFG 986
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Match: RAD5_CANAL (DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RAD5 PE=3 SV=2) HSP 1 Score: 239.58 bits (610), Expect = 3.413e-63 Identity = 186/687 (27.07%), Postives = 302/687 (43.96%), Query Frame = 1 Query: 2299 NFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD------VVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVG-----WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS------------------NSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLT-----ADDNQCPTRNCKIRLSLSSVF---SKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPE---VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 4215
NF E RP A TL+V P S+L QW E + + L Y T L D V+ITTY V E + SK++ G L KVG +FR++LDE +I+N T+ A++ + L++ R+W L+GTPI N +DDLYS +FL DP+ + + + + +P + + + ++++L+ I LRRTK +G+P++ LP K ++++Q+ F D+E Y + + F E +G + + Y IL +LRLRQ C H L+ G S+ + + A + +MY L C IC P + VV+ C H FC CI E L + CP NC+ +S +F ++ T N + R Q+ DYS + P+ +SSKI+A + L++L N+ K IVFSQ++ LD++++ LK +S ++ + DG +++ R K ++ FN E V+++++SLKA +GLN+ A ++D WW+P+ EDQAIDR HRIGQ V V+R ++N++E ++L +Q++K+++
Sbjct: 484 NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNSKIPIVMITTYGTVLNEFTRL----------------------------------------SKRRNS---------KGELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMYNLYGKIKEENECSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCP--NCRSPISKYQLFRIRNQPTKGNEI--RFHIQKDAPDYSFQLYLYDPN-----RSSSKIQALVRHLKALHSQSPNS-----------------------------------------------------KVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059 The following BLAST results are available for this feature:
BLAST of orange1.1g000539m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g000539m.v1.1_Csinensis_154_v1.1 ID=orange1.1g000539m.v1.1_Csinensis_154_v1.1; Name=orange1.1g000539m.v1.1; organism=Citrus sinensis; type=mRNA; length=9032bpback to top mRNA from alignment at scaffold00010:1826819..1835850+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=9032bp; location=Sequence derived from: scaffold00010:1826819..1835850+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1826819..1835850+ >orange1.1g000539m.v1.1_Csinensis_154_v1.1 ID=orange1.1g000539m.v1.1_Csinensis_154_v1.1; Name=orange1.1g000539m.v1.1; organism=Citrus sinensis; type=CDS; length=4302bp; location=Sequence derived from: scaffold00010:1826819..1835850+ (Citrus sinensisback to top |