orange1.1g015556m.v1.1, orange1.1g015556m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 2.557e-97 Identity = 135/227 (59.47%), Postives = 174/227 (76.65%), Query Frame = 1 Query: 514 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 +E T DLSQLF+G +FA GAHSR+Y GIYK VAVK++RIP E A+LE+QF EVALLSRL +PN+++F+AACKKPPVYC+ITEY+S+G+LR YL+K E +L + ++ +ALDI+RGMEY+HSQGVIHRDLK N+L++ E +K+ADFG +C E C + GTYRWMAPEMIK K Y RKVDVYSFG++LWE+ +P++ M P+QAAFAV K Sbjct: 77 EEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETR--AKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCREAKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEK 301
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: STY13_ARATH (Serine/threonine-protein kinase STY13 OS=Arabidopsis thaliana OX=3702 GN=STY13 PE=1 SV=2) HSP 1 Score: 240.736 bits (613), Expect = 2.052e-74 Identity = 109/227 (48.02%), Postives = 166/227 (73.13%), Query Frame = 1 Query: 514 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 DE T+DL +L +G FA GA +LY G Y E VA+KI+ P++ + A +E+QF +EV++L+ L +PN+++F+ AC+KP V+C++TEY GS+R +L + +++ +PL + ALD+ARGM Y+H + IHRDLK +N+LI + +KIADFG+A EV + ++ + GTYRWMAPEMI+H++Y +KVDVYSFG++LWE++ G +P++ M +QAAFAVVN+ Sbjct: 121 DEWTIDLRKLNMGPAFAQGAFGKLYKGTYNGEDVAIKILERPENSPEK--AQFMEQQFQQEVSMLANLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLTRRQNRAVPLKLAVKQALDVARGMAYVHGRNFIHRDLKSDNLLISADKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRAYNQKVDVYSFGIVLWELITGLLPFQNMTAVQAAFAVVNR 345
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: STY46_ARATH (Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 3.106e-62 Identity = 97/230 (42.17%), Postives = 149/230 (64.78%), Query Frame = 1 Query: 505 DAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 D D ++L L G + A G++ LY G Y + VA+K+++ E L + LEK+F +EV ++ ++ + NV++F+ AC KPP C++TE++ GS+ YLHK + LP L +A+DI +GM Y+H +IHRDLK N+L+D+ +K+ADFG+A + ++ + GTYRWMAPE+I+HK Y K DV+S+G++LWE++ G +PYE M P+QAA VV K Sbjct: 278 DGTDVWEINLKHLKFGHKIASGSYGDLYKGTYCSQEVAIKVLK------PERLDSDLEKEFAQEVFIMRKVRHKNVVQFIGACTKPPHLCIVTEFMPGGSVYDYLHK-QKGVFKLPTLFKVAIDICKGMSYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQTGVMTAETGTYRWMAPEVIEHKPYDHKADVFSYGIVLWELLTGKLPYEYMTPLQAAVGVVQK 500
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: STY8_ARATH (Serine/threonine-protein kinase STY8 OS=Arabidopsis thaliana OX=3702 GN=STY8 PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 6.726e-60 Identity = 92/230 (40.00%), Postives = 152/230 (66.09%), Query Frame = 1 Query: 505 DAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 D DE +D++QL + + A G++ L+ G Y + VA+K ++ PD NE L ++F++EV ++ ++ + NV++F+ AC + P C++TE+++ GS+ +LHK + L L+ +ALD+A+GM Y+H +IHRDLK N+L+D+ +K+ADFG+A ++ ++ + GTYRWMAPE+I+HK Y K DV+S+ ++LWE++ G IPY + P+QAA VV K Sbjct: 274 DGTDEWEIDVTQLKIEKKVASGSYGDLHRGTYCSQEVAIKFLK-PDRVNNEML-----REFSQEVFIMRKVRHKNVVQFLGACTRSPTLCIVTEFMARGSIYDFLHK-QKCAFKLQTLLKVALDVAKGMSYLHQNNIIHRDLKTANLLMDEHGLVKVADFGVARVQIESGVMTAETGTYRWMAPEVIEHKPYNHKADVFSYAIVLWELLTGDIPYAFLTPLQAAVGVVQK 496
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: STY17_ARATH (Serine/threonine-protein kinase STY17 OS=Arabidopsis thaliana OX=3702 GN=STY17 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 2.249e-57 Identity = 88/232 (37.93%), Postives = 151/232 (65.09%), Query Frame = 1 Query: 502 VDAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHK-TLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 D DE +D+ QL + + A G++ L+ G Y + VA+KI++ E + A + ++F++EV ++ ++ + NV++F+ AC + P C++TE+++ GS+ +LHK HK + L+ +ALD+++GM Y+H +IHRDLK N+L+D+ +K+ADFG+A + ++ + GTYRWMAPE+I+HK Y + DV+S+ ++LWE++ G +PY + P+QAA VV K Sbjct: 279 TDGTDEWEIDMKQLKIEKKVACGSYGELFRGTYCSQEVAIKILK------PERVNAEMLREFSQEVYIMRKVRHKNVVQFIGACTRSPNLCIVTEFMTRGSIYDFLHK--HKGVFKIQSLLKVALDVSKGMNYLHQNNIIHRDLKTANLLMDEHEVVKVADFGVARVQTESGVMTAETGTYRWMAPEVIEHKPYDHRADVFSYAIVLWELLTGELPYSYLTPLQAAVGVVQK 502
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: Y9955_DICDI (Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0267514 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.106e-46 Identity = 85/223 (38.12%), Postives = 136/223 (60.99%), Query Frame = 1 Query: 526 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNK 1194 + S+L + + G +Y G+++ VA+K I+I +D N+ L ++F +E+ +LSRL +PN++ +AAC PP C ITEYL GSL LH + K + + +A+ IA+GM Y+H GVIHRD+K N+L+D+ ++KI DFG++ + ++ G+ WM+PE++ + Y KVDVY+FG+ILWE+ G +PY ++ +Q A AV K Sbjct: 657 ISFSELKISSKLGEGTFGVVYKGLWRGSSVAIKQIKINEDVNNQVL-----EEFRKELTILSRLRHPNIVLLMAACTAPPNLCFITEYLPGGSLYDALHSKKIK-MNMQLYKKLAIQIAQGMNYLHLSGVIHRDIKSLNLLLDEHMNVKICDFGLSKLKSKSTEMTKSIGSPIWMSPELLMGEDYTEKVDVYAFGIILWELGTGELPYSGLDSVQLALAVTTK 873
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: DRKA_DICDI (Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum OX=44689 GN=drkA PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 5.459e-42 Identity = 85/226 (37.61%), Postives = 133/226 (58.85%), Query Frame = 1 Query: 514 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAV 1185 D +D+ Q+ +G+R G + +Y G ++ VAVK ++P + NE + K+F+RE+ L+ L +PNVI+F+ +C PP C+ TEY+ GSL + LH + L LI + +D A+G+ Y+H+ ++HRDLK N+L+D+ + +K+ADFG++ E A GT W +PE+++ + Y K DVYSFG+ILWE PY + P Q FAV Sbjct: 365 DGKDIDIHQIKIGVRIGKGNYGEVYLGTWRGSQVAVK--KLPAHNINENIL----KEFHREINLMKNLRHPNVIQFLGSCLIPPDICICTEYMPRGSLYSILHD-QALQLQWSLLIKMMIDAAKGVIYLHNSTPVILHRDLKSHNLLVDENWKVKVADFGLSTIEQQ-GATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDPYFGIPPFQVIFAV 582
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: DRKD_DICDI (Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum OX=44689 GN=drkD PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.097e-39 Identity = 81/235 (34.47%), Postives = 135/235 (57.45%), Query Frame = 1 Query: 487 VRVNAVDAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAV 1185 ++ V+ E V LS++ +G R G + +++ G ++ VAVK++ N+ + +L +EV LL +L +PN++ F+ AC +P C++TEYLS GSL L E + + + D ARGM Y+HS+ +IHRDLK +N+L+D + +K+ADFG+A + + A + GT W+APE++ + Y K DVYS+ ++LWE++ IPY N +Q ++ Sbjct: 833 AKIIEVEKPFEWEVPLSEIAIGARIGRGGYGQVFRGSWRGTEVAVKMLF------NDNVNLKLISDLRKEVDLLCKLRHPNIVLFMGACTEPSSPCIVTEYLSRGSLANILLD-ESIEMDWGLRLQLGFDCARGMTYLHSRNPIIIHRDLKTDNLLVDDSWQVKVADFGLATVKSHTFAKT-MCGTTGWVAPEVLAEEGYTEKADVYSYAIVLWELLTRLIPYAGKNTMQVVRSI 1059
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: DRKB_DICDI (Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum OX=44689 GN=drkB PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 4.053e-39 Identity = 82/226 (36.28%), Postives = 128/226 (56.64%), Query Frame = 1 Query: 514 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAV 1185 D +D Q+ +G+R G +Y G ++ VAVK ++P + NE + K+F+RE+ L+ L +PNVI+F+ +C P C+ TEY+ GSL + LH E + + + +D A+G+ Y+H ++HRDLK N+L+D+ + +K+ADFG++ E A GT W +PE+++ + Y K DVYSFG+ILWE PY + P Q FAV Sbjct: 382 DGKDIDTQQIKIGVRIGKGNFGEVYLGTWRGSQVAVK--KLPAHNINENIL----KEFHREINLMKNLRHPNVIQFLGSCLISPDICICTEYMPRGSLYSILHN-EKIKISWSLVKRMMIDAAKGIIYLHGSTPVILHRDLKSHNLLVDENWKVKVADFGLSTIEQQ-GATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDPYFGIPPFQVIFAV 599
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Match: YR826_MIMIV (Putative serine/threonine-protein kinase/receptor R826 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R826 PE=3 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 5.263e-38 Identity = 83/235 (35.32%), Postives = 137/235 (58.30%), Query Frame = 1 Query: 511 ADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACEEVYCDALSDDP----GTYRWMAPEMIKHKSYGRKV-----DVYSFGLILWEMVAGTIPYEEMNPIQAAFAVV 1188 +D+ +D +L LG + GA ++ G ++ VAVK+I PD +T+ +E+ F EV +++ L +PNV+ F+AA KPP C++ E+++ GSL L +P + IA ++GM ++HS G+ HRDLK N+L+D ++++K++DFG+ + D S +P GT +W APE++ S R+V DVYSFG+I+WE++ PY M+P A +V+ Sbjct: 776 SDDWEIDFHELELGEQLGTGAFGEVHKGTWRGTEVAVKMIS-PD----KTITKDIERNFKDEVRVMTTLRHPNVVLFMAASTKPPKMCIVMEFMALGSLHDLLKNELIPDIPFALKVKIAYQASKGMHFLHSSGITHRDLKSLNLLLDIKWNVKVSDFGLT--KFKSDVKSINPEKFAGTIQWTAPEIL---SEDREVDYILSDVYSFGIIMWELITRDQPYFGMSPAAIAVSVI 1000 HSP 2 Score: 148.288 bits (373), Expect = 1.824e-37 Identity = 82/228 (35.96%), Postives = 134/228 (58.77%), Query Frame = 1 Query: 526 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIA--CEEVYCDALSDDPGTYRWMAPEMIKHKSYGRKVDVYSFGLILWEMVAGTIPYEEMNPIQAAFAVVNKV 1197 ++ ++ +G + G++ +Y G +K+ VA+K DEN L R E+A L +LH+PN+I V A K P C++TEY+++G+LR + K L + I I ++IA+G+ Y+HS +IHRD+KP N+LID+ +++KIADFG A EE +A+ GT W APE+I++ Y KVDV+SFG+++WE++ P+ N ++ ++ V Sbjct: 1394 INYDEIKMGEQIGLGSYGVVYRGKWKNVDVAIKKFIKQKIDENHLLGIR------EEIAFLKKLHHPNIITMVGASLKKPNICIVTEYMAKGNLRDAMRTCTPK-LEWHQKIKILVNIAKGISYLHSFDPPIIHRDIKPSNILIDENWNVKIADFGFARIKEE---NAIMTRCGTPCWTAPEIIRNDIYDEKVDVFSFGIVMWEVLTCKEPFIGANFMKITMDILEDV 1611 The following BLAST results are available for this feature:
BLAST of orange1.1g015556m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g015556m.v1.1_Csinensis_154_v1.1 ID=orange1.1g015556m.v1.1_Csinensis_154_v1.1; Name=orange1.1g015556m.v1.1; organism=Citrus sinensis; type=mRNA; length=3427bpback to top mRNA from alignment at scaffold00010:2241367..2244793+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3427bp; location=Sequence derived from: scaffold00010:2241367..2244793+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:2241367..2244793+ >orange1.1g015556m.v1.1_Csinensis_154_v1.1 ID=orange1.1g015556m.v1.1_Csinensis_154_v1.1; Name=orange1.1g015556m.v1.1; organism=Citrus sinensis; type=CDS; length=1218bp; location=Sequence derived from: scaffold00010:2241367..2244793+ (Citrus sinensisback to top |