orange1.1g015163m.v1.1, orange1.1g015163m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.891e-18 Identity = 122/418 (29.19%), Postives = 172/418 (41.15%), Query Frame = 1 Query: 1 MAEEFQT--GICGG---AWWINPTRSSS-----LSPCSAAGIGLSDHMGSFLWPSNDHFHMVDXXXXXXXXXXXXXXXFCEESAXXXXXXXSVSADTSSMAFTEKHQQTXXXXXXXXXILMDSTLQMMSLVPXXXXXXTDCFQALLRGNGRAENNYRSMRLEDLNSQIQKEWSPSKSYASSAGAGDHHQECFSLDQSHPVIKSATASFPDNCTVSESSCQGLSPGFPVDSASYGYTSALLQSYFEPQPQPVQQQSLYSSNNTRSMGNYMSTANYGNNYNEVSPPWPKFAAASFVKPSLPKQQQPSGGL--HFSNNT---PFWNA---TALNDISRPGGLLAAALGEKRTCPTFTAKYNNNEEVRDSGSAAKKGSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
MAEEF+ ICGG AWW +P S LSPC A I +D S+ H+ + D +++ F ++ +DS + MDSTLQMM L SS+ S+D Q +L+ EDLNS S+ S+ DH Q S S ++ A +S S S +S+L++++++P+P P N++ST + N P+ + A+ P Q + GL FSNN PFWN+ T LN+ + + + R K N + S S + +E A K+PR+ TPSPLPTFKVRKE L D+IT+LQQLVSPFGK D
Sbjct: 1 MAEEFKATASICGGGGGAWWNSPRSVMSPSDHFLSPCFGAAITSNDF-------SSQENHL---------------------------KSRMTCTDNNNIVFGQREADSDSGGST---VTMDSTLQMMGL-GFSSNCSSDWNQTILQ--------------EDLNS----------SFIRSSQDQDHGQGFLSTTTSPYILNPACSS----------------------SPSTSSSSSLIRTFYDPEPSPY---------------NFVSTTSGSIND-------PQLSWANKTNP----HHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQIISTR----LEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTD 304
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana OX=3702 GN=BHLH114 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 4.471e-15 Identity = 49/112 (43.75%), Postives = 54/112 (48.21%), Query Frame = 1 Query: 868 KQQQPSGGLHFSNNTPFWNATALNDISRPGGLLAAALGEKRTCPTFTAKYNNNEEVRDSGSAAKKGSSEP-AFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
K P+ N PF + L D L K + T Y N R P KRPR+ET SPLP+FKVRKEKLGDRITALQQLVSPFGK D
Sbjct: 86 KSTIPNAKSELLENFPFLDNMFLVDSEAESLLDHEIRNHKSSKEQITQDYKNLTSKRSEELEENSDEYSPRLLKRPRLETLSPLPSFKVRKEKLGDRITALQQLVSPFGKTD 197
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH103_ARATH (Transcription factor bHLH103 OS=Arabidopsis thaliana OX=3702 GN=BHLH103 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.594e-15 Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 Query: 1042 SGSAAKKGSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
SG SS+P KRPR+ETPS P+FKVRKEKLGDRITALQQLVSPFGK D
Sbjct: 163 SGELEDIESSQP-LKRPRLETPSHFPSFKVRKEKLGDRITALQQLVSPFGKTD 214
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 9.790e-14 Identity = 104/329 (31.61%), Postives = 152/329 (46.20%), Query Frame = 1 Query: 325 ILMDSTLQMMSLVPXXXXXXTDCFQALLRGNGRAENNYRSMRLEDLNSQIQKEWSPSKSYASSA------GAGDHHQECFSLDQS--HPVIKSATAS---FPDN---------CTVSESSCQGLSPGFPVDSASYGYTSALLQSYFEPQPQPVQQQS--LYSSNNTRSMGNYMSTANYGN------NYNEVSPPWPKFAAASFVKPSLPKQQQPSGGLHFSNNTPFWNATALNDISRPGGLLAA-----ALGEKRTCP-TFTAKYNNNEEVRDSGS-AAKKGSSE--PAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
+ D LQM+ L SS S Q+LLRG+ +AE ++ M E+LN + + + ++S+ + HHQ + QS P I ++ + F D+ S +CQG F VD++S +A + QQ+ SS+ S + S+ Y NY++++ P + F++ S P + L FSNN FWN A + P A+ AL + P +F + N E+RDS S K+G ++ PA KR + E SP P FK RKEK+GDRI ALQQLVSPFGK D
Sbjct: 50 LATDHHLQMIGLGLSSQSPVDQWNQSLLRGDSKAETSFGVMLQENLNLDATSNANANTTSSTSSYQLQESDSSHHHQALWRDPQSDFKPQILTSGGNRGFFLDHQFSPHGSSSTDSSTVTCQG----FAVDNSSNAMYAATTTTPNSSSGMFHHQQAGGFGSSDQQPSRNHQQSSLGYSQFGSSTGNYDQMASALP---STWFLRSSPPPKPHSP--LRFSNNATFWNPAAAGNAGAPPPHDASSNFFPALQPPQIHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFK-RKEKMGDRIAALQQLVSPFGKTD 368
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.568e-11 Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 1051 AAKKGSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
A K G E A K+PR+E+ S P FKVRKEKLGDRI ALQQLVSPFGK D
Sbjct: 309 ATKAG--ENASKKPRVESRSSCPPFKVRKEKLGDRIAALQQLVSPFGKTD 356
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.925e-8 Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 1078 AFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
A K+P+++ PS T KVRKEKLG RI +L QLVSPFGK D
Sbjct: 203 ANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTD 243
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 5.191e-7 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 1084 KRPRIE-TPSPLPTFKVRKEKLGDRITALQQLVSPFGKVD 1200
K+PR++ +PS T KVRKEKLG RI AL QLVSPFGK D
Sbjct: 248 KKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTD 287 The following BLAST results are available for this feature:
BLAST of orange1.1g015163m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 7 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g015163m.v1.1_Csinensis_154_v1.1 ID=orange1.1g015163m.v1.1_Csinensis_154_v1.1; Name=orange1.1g015163m.v1.1; organism=Citrus sinensis; type=mRNA; length=2584bpback to top mRNA from alignment at scaffold00010:1321713..1324296+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2584bp; location=Sequence derived from: scaffold00010:1321713..1324296+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1321713..1324296+ >orange1.1g015163m.v1.1_Csinensis_154_v1.1 ID=orange1.1g015163m.v1.1_Csinensis_154_v1.1; Name=orange1.1g015163m.v1.1; organism=Citrus sinensis; type=CDS; length=1239bp; location=Sequence derived from: scaffold00010:1321713..1324296+ (Citrus sinensisback to top |