orange1.1g016035m.v1.1, orange1.1g016035m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNPH_ARATH (PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana OX=3702 GN=AHL PE=2 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 2.589e-99 Identity = 164/273 (60.07%), Postives = 204/273 (74.73%), Query Frame = 1 Query: 301 ELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLR 1119 E+D AVR V +A LC KVQE L + V+SKDD+SPVTVAD+ VQA VSW+L++ FG +N+SIVAEED +LS+AD+ GLL AV N VN+ L+EA +GL P LG+SE+++AI RCNS GGP GR W LDPVDGTLGFVRGDQYAVALALIENG+ +LGVLGCPNYP++KE LS + T + S KGCVMYA +GSG+AWMQPLI G P SA ++VSS+++P LAT CEPVE++NS+H FTAGLA+S+G+R Sbjct: 9 EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVADFGVQAIVSWVLAEVFGDQNLSIVAEEDTETLSEADSLGLLGAVSNAVNEALSEAQNYGLPKPVKPLGSSEILKAISRCNSVGGPKGRHWVLDPVDGTLGFVRGDQYAVALALIENGKVLLGVLGCPNYPVKKECLSNGCNQ----AMKTKAVAGSVSKGCVMYAKRGSGQAWMQPLIVGG----IPESATLLKVSSVDDPVLATVCEPVERANSNHLFTAGLANSMGVR 273
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP1_ARATH (SAL1 phosphatase OS=Arabidopsis thaliana OX=3702 GN=SAL1 PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.836e-47 Identity = 115/277 (41.52%), Postives = 152/277 (54.87%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLRC 1122 Y KELD A +A +A LCQKVQ++L+ D SPVTVAD+ QA VS +L + SE S+VAEED L K + L+ + VND LA F L +++ AI S GGP GR W LDP+DGT GF+RGDQYAVAL L+E G+ VLGVL CPN P+ I+ S S + GC+ +A GSG +MQ L D K +S VQVSS+ENP A+F E E ++S H ++ +A+ +G++ Sbjct: 3 YEKELDAAKKAASLAARLCQKVQKALLQSDVQSKS---DKSPVTVADYGSQAVVSLVLEKELSSEPFSLVAEEDSGDLRKDGSQDTLERITKLVNDTLATEESFN----GSTLSTDDLLRAIDCGTSEGGPNGRHWVLDPIDGTKGFLRGDQYAVALGLLEEGKVVLGVLACPNLPLAS------------IAGNNKNKSSSDEIGCLFFATIGSG-TYMQLL---DSK----SSPVKVQVSSVENPEEASFFESFEGAHSLHDLSSSIANKLGVKA 252
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP4_ARATH (Probable SAL4 phosphatase OS=Arabidopsis thaliana OX=3702 GN=SAL4 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.216e-37 Identity = 102/277 (36.82%), Postives = 142/277 (51.26%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLRC 1122 Y KEL A +AV +A L Q+VQ+SL+ D SPVT AD+ QA +S +L + E + +VAEE+ L K A L+++ VN+ LA + +L +V +AI S GG +GR W LDPVDGT GFV+G++YAVALAL+ G+ VLGV+ CP K S GC+ +A G G A++Q L +GD + + VQVS+IENP ATF E K HS +A+ +G++ Sbjct: 3 YEKELAAAKKAVSLAARLSQEVQKSLLQSDVRSKS---DKSPVTAADYGSQAVISHVLERELHPEPLYLVAEENAEDLHKNGAEEFLESITKLVNNALASDDSYA----NSSLSMDDVRKAIDHGRSQGGSSGRHWILDPVDGTRGFVKGEEYAVALALLVEGKVVLGVMACPKLENHK----------------------SSSSGCLFFATVGEG-AYVQSL-EGDS-----HPPQKVQVSNIENPEEATFVESSHKPIPIHS---SIANKLGIKA 240
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: HAL21_CANAW (3'(2'),5'-bisphosphate nucleotidase 1 OS=Candida albicans (strain WO-1) OX=294748 GN=HAL21 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.525e-36 Identity = 93/275 (33.82%), Postives = 146/275 (53.09%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGL 1116 Y KEL+VA AV+ A L +++ +S++ + S +KDD SPVT+ D+++QA ++ + +F S+ IV EED L + + L V++ + E + ++V ++I NS GG GRFWALDP+DGT GF+RGDQ+AV LALIE+G+ VLGV+GCPN ++ + S G + A KG G + + +G + L + +P+++ + NP+ E VEK +SSHS A + +G Sbjct: 8 YQKELEVATLAVKRASLLTKQLSDSIVQTARSGTLTKDDKSPVTIGDFALQAIINHAIKLNFPSD--EIVGEEDSQELQ--ENSSLADQVLSLIIKIQQETSVYN-DVVGTLTDKNKVFQSIDYGNSQGGLKGRFWALDPIDGTKGFLRGDQFAVCLALIEDGKVVLGVIGCPN----------------LLENIVSNEEHSGVVGGLYSAVKGVGSFYSELFKEGAEPL---SQQKPIKMQNHTNPSQLKVVEGVEKGHSSHSTQAEIKAKLGF 258
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: HAL21_CANAL (3'(2'),5'-bisphosphate nucleotidase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAL21 PE=3 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 2.258e-35 Identity = 93/275 (33.82%), Postives = 146/275 (53.09%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGL 1116 Y KEL+VA AV+ A L +++ +S++ + S +KDD SPVT+ D++ QA ++ + +F S+ IV EED L + + L V++ + E + ++V ++I NS GG GRFWALDP+DGT GF+RGDQ+AV LALIE+G+ VLGV+GCPN E + + ++ G + A KG G + + +G + L + +P+++ + NP+ E VEK +SSHS A + +G Sbjct: 8 YQKELEVATLAVKRASLLTKQLSDSIVQTARSGTLTKDDKSPVTIGDFASQAIINHAIKLNFPSD--EIVGEEDSQELQ--ENSSLADQVLSLIIKIQQETSVYN-DVVGTLTDKNKVFQSIDYGNSQGGSKGRFWALDPIDGTKGFLRGDQFAVCLALIEDGKVVLGVIGCPNLS---ENIVSNEEHSGVV-------------GGLYSAVKGVGSFYSELFKEGTEPL---SQQKPIKMQNHTNPSQLKVVEGVEKGHSSHSTQAEIKAKLGF 258
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP3_ARATH (Probable SAL3 phosphatase OS=Arabidopsis thaliana OX=3702 GN=SAL3 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 3.320e-35 Identity = 83/216 (38.43%), Postives = 117/216 (54.17%), Query Frame = 1 Query: 406 DNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCE 1053 D+SPVTVAD+ QA VS +L + +E VS+VAEED L K A +L + V D LA + + P L + +V+ AI R S GGP GR W LDP+ GT GF+RG+QYA+ LAL+ G+ VLGV+ CP P+ + + + K+ GC+ Y G+G ++Q L + V+VSSI++PA A+F E Sbjct: 38 DDSPVTVADYGSQAVVSLVLERELQNEPVSLVAEEDSGELRKIAAETVLARITELVKDTLASDESYAIASP---LTSDDVLNAIDRGKSEGGPKGRHWILDPIGGTRGFIRGEQYAIGLALLVEGKVVLGVMACPKLPLAS---TAGNALKSLPEKV----------GCLFYGSVGNG-TYVQ-------SLSVDSLPAKVEVSSIDDPAKASFFE 229
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: HAL22_CANAL (3'(2'),5'-bisphosphate nucleotidase 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAL22 PE=3 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 3.581e-34 Identity = 91/264 (34.47%), Postives = 139/264 (52.65%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHS 1083 Y KEL+VA AV+ A L +++ +S++ + S +KDD SPVT+ D++ QA ++ + +F N IV EED L + GL ++ + E + +EV ++I NS GG GRFWALDP+DGT GF+RGDQ+AV LALIE+G+ VLGV+GCPN E + + ++ G + A KG G + + +G + L + + +++ + NP+ E VEK +SSHS Sbjct: 8 YQKELEVATLAVKRASLLTKQLSDSIVQTAKSGTLTKDDKSPVTIGDFASQAIINHAIKLNF--PNDEIVGEEDSRELQ--ENTGLADQMLQLITKIQKETSGYN-DIVGTLTDKNEVYQSIDFGNSQGGSKGRFWALDPIDGTKGFLRGDQFAVCLALIEDGKVVLGVIGCPNLS---ENIVSNEEHSGVV-------------GGLYSAVKGVGSFYSELFKEGAEPL---SQQKRIKMQNHTNPSQLKVVEGVEKGHSSHS 247
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP2_ARATH (SAL2 phosphatase OS=Arabidopsis thaliana OX=3702 GN=SAL2 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.171e-33 Identity = 98/280 (35.00%), Postives = 141/280 (50.36%), Query Frame = 1 Query: 292 YSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLSQSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLRCINI 1131 Y KEL A +AV +A L Q+VQ++L+ + D SPVT AD+ QA VS +L + + +S+VAEE+ L K + L+ + V D LA + + L +V+ AI S GG G W LDP+DGT GFVRG+QYAV LAL+ G+ VLGV+ CPN P+ + + S D GC+ +A GSG ++Q L +G+ + + VQVSS EN A F E K H +A +G++ + + Sbjct: 3 YEKELAAAKKAVTLAARLSQEVQKTLLQSQVWKKS---DRSPVTAADYGSQAVVSLVLERELQPDKLSLVAEEETGDLRKNGSEAFLEDIAKLVKDTLASEESY----TSSPLSTDDVLNAIDCGKSEGGCKGSHWVLDPIDGTRGFVRGEQYAVGLALLVEGKVVLGVMACPNLPLASAVCATDN-------------SSQEDVGCLFFATTGSG-TYVQSL-KGN------SLPQKVQVSSNENLDEAKFLESYHKPIPIH---GTIAKKLGIKALPV 251
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP_ORYSJ (3'(2'),5'-bisphosphate nucleotidase OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0183300 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.453e-32 Identity = 99/280 (35.36%), Postives = 145/280 (51.79%), Query Frame = 1 Query: 286 NEYSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLS-QSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLRC 1122 N Y+ EL A +AV +A LCQ VQ+ ++ D SPVTVAD+ Q VS +L ++ S + S+VAEED L K A +L+ + VN+ + + + ++ ++ AI S GGP+GR W LDP+DGT GF+RGDQYA+ALAL++ G+ VLGVL CPN + I L +S G + A G G A ++ L QG + A+ + V SI+NP A+F E E ++S T +A +G++ Sbjct: 7 NPYAAELAAAKKAVTLAARLCQAVQKDILQSGVQSKA---DQSPVTVADYGSQILVSLVLKMEAPASSSFSMVAEEDSEELRKEGAEEILENITELVNETIVDDGTY-----SIYFSKEGILSAIDDGKSEGGPSGRHWVLDPIDGTKGFLRGDQYAIALALLDEGKVVLGVLACPNLSLGS------------IGNLNGGSSGDQ-VGALFSATIGCG-AEVESL-QG-------SPAQKISVCSIDNPVEASFFESYEGAHSLRDLTGSIAEKLGVQA 256
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Match: DPNP_ORYSA (3'(2'),5'-bisphosphate nucleotidase OS=Oryza sativa OX=4530 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.453e-32 Identity = 99/280 (35.36%), Postives = 145/280 (51.79%), Query Frame = 1 Query: 286 NEYSKELDVAVRAVQMACFLCQXXXXXXXXXXXXXXXXXDDNSPVTVADWSVQATVSWLLS-QSFGSENVSIVAEEDVVSLSKADAAGLLKAVVNTVNDCLAEAPRFGLQGPAMALGASEVIEAIGRCNSSGGPTGRFWALDPVDGTLGFVRGDQYAVALALIENGEAVLGVLGCPNYPMRKEWLSYQHRYHRIISKLTPPTSESWDKGCVMYAWKGSGEAWMQPLIQGDKKLVWPNSARPVQVSSIENPALATFCEPVEKSNSSHSFTAGLAHSVGLRC 1122 N Y+ EL A +AV +A LCQ VQ+ ++ D SPVTVAD+ Q VS +L ++ S + S+VAEED L K A +L+ + VN+ + + + ++ ++ AI S GGP+GR W LDP+DGT GF+RGDQYA+ALAL++ G+ VLGVL CPN + I L +S G + A G G A ++ L QG + A+ + V SI+NP A+F E E ++S T +A +G++ Sbjct: 7 NPYAAELAAAKKAVTLAARLCQAVQKDILQSGVQSKA---DQSPVTVADYGSQILVSLVLKMEAPASSSFSMVAEEDSEELRKEGAEEILENITELVNETIVDDGTY-----SIYFSKEGILSAIDDGKSEGGPSGRHWVLDPIDGTKGFLRGDQYAIALALLDEGKVVLGVLACPNLSLGS------------IGNLNGGSSGDQ-VGALFSATIGCG-AEVESL-QG-------SPAQKISVCSIDNPVEASFFESYEGAHSLRDLTGSIAEKLGVQA 256 The following BLAST results are available for this feature:
BLAST of orange1.1g016035m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g016035m.v1.1_Csinensis_154_v1.1 ID=orange1.1g016035m.v1.1_Csinensis_154_v1.1; Name=orange1.1g016035m.v1.1; organism=Citrus sinensis; type=mRNA; length=3175bpback to top mRNA from alignment at scaffold00010:1742938..1746112+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3175bp; location=Sequence derived from: scaffold00010:1742938..1746112+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1742938..1746112+ >orange1.1g016035m.v1.1_Csinensis_154_v1.1 ID=orange1.1g016035m.v1.1_Csinensis_154_v1.1; Name=orange1.1g016035m.v1.1; organism=Citrus sinensis; type=CDS; length=1191bp; location=Sequence derived from: scaffold00010:1742938..1746112+ (Citrus sinensisback to top |