orange1.1g022544m.v1.1, orange1.1g022544m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus OX=9913 GN=TMEM184C PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.712e-33 Identity = 91/278 (32.73%), Postives = 152/278 (54.68%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTF-TIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ ++LT+ ++ ++ QHL ++ P+ QK II I+ M PIY++DS++ L ++D+ +ECYEA VI FM + +YL ++ E K ++ H P+ P T + L K Q+ V+RP +I+ + +LL IY +WT+ II N+S A+Y L++FY V +EL P +P+ KF+C+K +VF FWQ VV+ +L +G+I H W VE + +Q+ ++C+EM + +I Y + PY + E Sbjct: 52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPSIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLIIEAKDQQKHFP-PLCCCPPWT--MGEVLLFRCKLGVLQYTVVRPFTTIIALVCELLDIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAE 322
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii OX=9601 GN=TMEM184C PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.965e-32 Identity = 90/278 (32.37%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTF-TIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ ++LT+ ++ ++ QHL ++ P+ QK II I+ M PIY++DS++ L ++D+ +ECYEA VI FM + +YL ++ E K ++ H P+ P + L K Q+ V+RP +I+ + +LL IY +WT+ II N+S A+Y L++FY V +EL P +P+ KF+C+K +VF FWQ VV+ +L +G+I H W VE + +Q+ ++C+EM + +I Y + PY + E Sbjct: 52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKHFP-PLCCCPPWA--MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAE 322
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens OX=9606 GN=TMEM184C PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 2.267e-32 Identity = 90/278 (32.37%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTF-TIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ ++LT+ ++ ++ QHL ++ P+ QK II I+ M PIY++DS++ L ++D+ +ECYEA VI FM + +YL ++ E K ++ H P+ P + L K Q+ V+RP +I+ + +LL IY +WT+ II N+S A+Y L++FY V +EL P +P+ KF+C+K +VF FWQ VV+ +L +G+I H W VE + +Q+ ++C+EM + +I Y + PY + E Sbjct: 52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKHFP-PLCCCPPWA--MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAE 322
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus OX=10090 GN=Tmem184c PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.008e-31 Identity = 90/278 (32.37%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTFTIIXXXXXXX-XXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ ++LT+ ++ + QHL ++ P+ QK II I+ M PIY+VDS+V L+ K ++D+ +ECYEA VI FM + +YL I I+ E K ++ +H P+ P + L K Q+ V+RPI ++ + ++L +Y +WT+ +ILN L A+Y L++FY V +EL P +P+ KF+C+K +VF FWQ V++ +L +G+I W E + +Q+ ++C+EM +I Y + PY + E Sbjct: 52 AGIFLLLTIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLILHLEAKDQQ-NHILPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVYDEGNFGFSNAWTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKLGVISEKRTWEWQSAEAVATGLQDFIICIEMFFAAIAHHYTFSYKPYVHEAE 322
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_XENLA (Transmembrane protein 184C OS=Xenopus laevis OX=8355 GN=tmem184c PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.578e-31 Identity = 90/278 (32.37%), Postives = 150/278 (53.96%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLL--DIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTF-TIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHFWLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ V++T+ ++ + QHL ++ P+ QK II I+ M PIY+VDS++ L DI ++D+ +ECYEA VI FM + +YL + E K ++ H P+ P + L K Q+ V+RP+ +++ + QL +Y +WT+ II NVS A+Y LV+FY V +EL P +P+ KF+C+K +VF FWQ V + IL G+I + W V+ + +Q+ ++C+EM + ++ Y++ PY + E Sbjct: 50 AGIFVLMTIPISLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWIALKYPDIA------IYVDTCRECYEAYVIYNFMIFLLNYLTNRCPNLALVLEAKDQQ-RHLPPLCCCPPWA--MGDVLLFRCKLGVLQYTVVRPVTTVIALICQLTGVYGEGDFSVKNAWTYLVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKRVQDVATGLQDFIICVEMFLAAVAHHYSFTYKPYVQEAE 318
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_XENTR (Transmembrane protein 184C OS=Xenopus tropicalis OX=8364 GN=tmem184c PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.184e-30 Identity = 89/278 (32.01%), Postives = 150/278 (53.96%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLL--DIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTF-TIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHFWLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ V++T+ ++ + QHL ++ P+ QK II I+ M PIY+VDS++ L DI ++D+ +ECYEA VI FM + +YL + E K ++ H P+ P + L K Q+ V+RP+ +++ + QL +Y +WT+ II NVS A+Y LV+FY V +EL P +P+ KF+C+K +VF FWQ V + IL G+I + W V+ + +Q+ ++C+EM + ++ +++ PY + E Sbjct: 50 AGIFVLMTIPISLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWIALKYPDIA------IYVDTCRECYEAYVIYNFMIFLLNYLTNRCPNLALVLEAKDQQ-RHLPPLCCCPPWA--MGDVLLFRCKLGVLQYTVVRPVTTVIALICQLTGVYGEGDFSVKNAWTYLVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKKVQDVATGLQDFIICVEMFLAAVAHHFSFTYKPYVQEAE 318
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T1843_DICDI (Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum OX=44689 GN=tmem184C PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.619e-30 Identity = 90/268 (33.58%), Postives = 151/268 (56.34%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPS----------WLSWTFTIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHFWLDVEHINEAIQNVLVCLEMVVFSIIQQY 819 +G+C + + + L+ +HL + NP+ QK I+ I++M PIY+VDS++ L ++ S + D V++ YEA V+ F +L+ +Y++ ++V + H FP+T P+ ++LD L K + QFV I+PI +I+ + L+ Y WL T++ N+SV L+LY LV++Y +EL P KPL KF+CIK I+FF FWQ + + L G+I W V++I+ A+Q+ + C+EMV+ +I + Sbjct: 5 AGVCSGVAILLSFYLIYKHLRNYTNPELQKYIVRILIMVPIYSVDSWLSLRFVELS----LYFDVVRDTYEAYVLYCFFSLIVAYIERDF--DLVELLHSKEPLPHPFPLTCL-PK-IKLDRGFLTNCKRFVLQFVFIKPIVAIISLVLETQHKYGEGKFQVGTGYVWL----TVVENISVGLSLYFLVLYYKAMEEELKPFKPLGKFLCIKSILFFSFWQSIAISFLVYFGVISPIGSW-SVDNISSALQDFITCVEMVILAICHHF 259
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_CHICK (Transmembrane protein 184C OS=Gallus gallus OX=9031 GN=TMEM184C PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.425e-30 Identity = 87/278 (31.29%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTFTIIXXXXXXX-XXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ +++T+ ++ + QHL ++ P+ QK II I+ M PIY++DS++ L ++D+ +ECYEA VI FM + +YL ++ E K ++ H P P + + L K Q+ V+RP +I+ + +L+ +Y +WT+ +ILN L A+Y LV+FY V +EL P +P+ KF+C+K +VF FWQ V++ +L +G+I H W VE + +Q+ ++C+EM + +I Y++ PY + E Sbjct: 50 AGIFLLMTIPISLWGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPNIAIYVDTCRECYEAYVIYNFMVFLSNYLTNRYPNLVLIIEAKDQQRH--LPPLCCCP-SWAMGEVLLFRCKLGVLQYTVVRPFTTIIALICELVGVYDEGNFSFDNAWTYLVILNNMSQLFAMYCLVLFYKVLREELNPIQPVGKFLCVKMVVFVSFWQAVLIALLVKVGVISEKHTWEWQSVEAVATGLQDFIICVEMFLAAIAHHYSFSYKPYVQEAE 320
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus OX=10116 GN=Tmem184c PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.324e-29 Identity = 89/278 (32.01%), Postives = 150/278 (53.96%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSWL-----SWTFTIIXXXXXXX-XXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGIIRSHHF--WLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 +G+ ++LT+ +M + QHL ++ P+ QK II I+ M PIY++DS+V L K ++D+ +ECYEA VI FM + +YL I ++ E K ++ +H P+ P + L K Q+ V+RPI ++ + ++L +Y +WT+ +ILN L A+Y L++FY V +EL P +P+ KF+C+K +VF FWQ V++ +L +G+I W E + +Q+ ++C+EM +I Y + PY + E Sbjct: 52 AGIFLLLTIPVSMCGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWVALKYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLMLHLEAKDQQ-NHLPPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTSLVCEILGVYDEGNFSFSNAWTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKVGVISEKRTWEWQSAEAVATGLQDFIICIEMFFAAIAHHYTFSYKPYVHEAE 322
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens OX=9606 GN=TMEM184A PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.513e-28 Identity = 93/282 (32.98%), Postives = 147/282 (52.13%), Query Frame = 1 Query: 46 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY--------PSWLSWTFTIIXXXXXXXXXXXXXXFYHVFAKELGPHKPLAKFMCIKGIVFFCFWQDVVLEILAGMGII----RSHHFWLDVEHINEAIQNVLVCLEMVVFSIIQQYAYPATPYSGDVE 855 SG+ V + T + HL + P+EQ+ II ++L+ PIYA DS++ LL + G ++ + DSV++CYEA VI F++L + YL + + EI+G+ I S R + L+ K T QF +++P+ ++ I LQ Y +L T+I N SVSLALY+L +FY + L P +P+ KF+ IK ++F FWQ ++L IL G+I S L + QN ++C+EM+ S+ +YA+P Y+ E Sbjct: 59 SGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYL--YVTLIYNASVSLALYALFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTLAAGYQNFIICVEMLFASVALRYAFPCQVYAEKKE 334 The following BLAST results are available for this feature:
BLAST of orange1.1g022544m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g022544m.v1.1_Csinensis_154_v1.1 ID=orange1.1g022544m.v1.1_Csinensis_154_v1.1; Name=orange1.1g022544m.v1.1; organism=Citrus sinensis; type=mRNA; length=3102bpback to top mRNA from alignment at scaffold00010:1709219..1712320- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3102bp; location=Sequence derived from: scaffold00010:1709219..1712320- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1709219..1712320- >orange1.1g022544m.v1.1_Csinensis_154_v1.1 ID=orange1.1g022544m.v1.1_Csinensis_154_v1.1; Name=orange1.1g022544m.v1.1; organism=Citrus sinensis; type=CDS; length=888bp; location=Sequence derived from: scaffold00010:1709219..1712320- (Citrus sinensisback to top |