orange1.1g022251m.v1.1, orange1.1g022251m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC79_ORYSJ (DnaJ protein ERDJ7 OS=Oryza sativa subsp. japonica OX=39947 GN=ERDJ7 PE=3 SV=1) HSP 1 Score: 387.882 bits (995), Expect = 5.687e-135 Identity = 201/276 (72.83%), Postives = 239/276 (86.59%), Query Frame = 1 Query: 73 SVAIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIKGAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRRR 900 S AIYC+EDDCYDLLGV Q+AN SEIKKAYYKLSLK+HPDKNPDP+SRKLFVKIANAYEILKDE+TR QYDYAIAHPEEVFYN A+YY AYYGHKTDPRAVL+GLLLI S FQYLNQ+ RY++A+ VK+TPAY+N+L+ALE ER+GGI +KKK +KQMDKK E LS E++LQI+G EKPS+W L GV+ ILLPY+IGK+L W W+WRY +KK YAWEDA YLT+ SL++P + W NID+ +KE+LV +RLWEK+N+E Y+AEMRKESKRRR Sbjct: 34 SNAIYCEEDDCYDLLGVKQDANVSEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDESTRGQYDYAIAHPEEVFYNTAQYYRAYYGHKTDPRAVLIGLLLIISAFQYLNQFGRYSKAIETVKQTPAYKNRLKALEFERTGGISSKKKGHKQMDKKVEEVLSNEVELQIQGVEKPSLWRLYGVQFILLPYSIGKVLSWKFCWFWRYRIKKLPYAWEDACYLTRMSLKIPANTWENIDDYRKENLVMKRLWEKNNMERYIAEMRKESKRRR 309
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DNJ50_ARATH (Chaperone protein dnaJ 50 OS=Arabidopsis thaliana OX=3702 GN=C50 PE=2 SV=1) HSP 1 Score: 385.956 bits (990), Expect = 2.288e-134 Identity = 211/300 (70.33%), Postives = 248/300 (82.67%), Query Frame = 1 Query: 1 MAPPTVIRWYAITSAIVLLLLISPSVAIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIKGAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRRR 900 MAPP RW + L L + S AIYC +DCY LLGV+Q+AN+S+IK++YYKLSL++HPDKNPDP+SRKLFVKIA AYEILKD TR QYDYAI HPEEVFYN A+YY A YGHK+DPRAVLVGLL++ S FQYLN RYN+A+A VK+TPAY+NKL+ALELER+GG+ NKKK +KQ+D+K E+LS ELDLQIKGAEKPSVWEL+GVR ILLPYTI KLL+W+ W WRY VKKA Y+WEDA YLT++SL VP DAW N+DE +KEDLV +RLWEK NLE+Y AEMRKESKRRR Sbjct: 1 MAPPVTERWCLALILLFLSLFVQSSTAIYCGAEDCYALLGVAQDANASDIKRSYYKLSLQHHPDKNPDPESRKLFVKIATAYEILKDNTTRAQYDYAIEHPEEVFYNTAQYYRAKYGHKSDPRAVLVGLLVVLSAFQYLNNVARYNEAIATVKRTPAYKNKLKALELERTGGVSNKKKGSKQIDQKLQEELSNELDLQIKGAEKPSVWELLGVRFILLPYTIIKLLVWYSSWVWRYKVKKAPYSWEDASYLTRRSLSVPADAWANLDEYRKEDLVQKRLWEKQNLENYFAEMRKESKRRR 300
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_XENLA (DnaJ homolog subfamily C member 25 OS=Xenopus laevis OX=8355 GN=dnajc25 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.507e-40 Identity = 101/316 (31.96%), Postives = 171/316 (54.11%), Query Frame = 1 Query: 22 RWYAITSAIVLLLLISPSV---AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDK-------NPDPDSRKL----FVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKEL---------DLQIKGA-EKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 RW + + VL L +YC CYD+LGVS++AN +I +AY +L+ KYHPD+ PD ++R+ F+ +A AYE LKDE TR+ YDY + HPEE + + YY K D R V++ + S FQY + W+ YN+A+ + YR ++A+E+ + G+ N+ K + + E S+E + IKG +KP +++++ ++IL PY + K + W+ RW + +N++ Y E+ LYL +K +++ + ++E +K + ++LW K N E Y E +E+K++ Sbjct: 4 RWVLLVALSVLFLSGRAGALTEGLYCGRQVCYDVLGVSRDANKGDIARAYRQLARKYHPDRYRPGDQLGPDGETRESAQEKFILVATAYETLKDEETRKDYDYMLDHPEEYYRHYYHYYSRRLAPKVDVRIVILVSVCAVSIFQYYSWWSSYNEAINYLATVTKYR--IQAMEIAKQQGLLNRTKEKGKNRRSKEEIKSEEEEIIRDIIKNKIDIKGGYQKPQIFDILLFQIILFPYYMFKYISWYVRWIYTFNIQGKEYGEEEKLYLIRKYMKMSQSQFDTLEEHRKNTFLEQKLWIKENYEVYRQEQEEETKKK 317
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_XENTR (DnaJ homolog subfamily C member 25 OS=Xenopus tropicalis OX=8364 GN=dnajc25 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.384e-38 Identity = 94/294 (31.97%), Postives = 163/294 (55.44%), Query Frame = 1 Query: 79 AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDK-------NPDPDSRKL----FVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKEL---------DLQIKGA-EKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 +YC CYD+LGVS++A+ +I +AY +L+ KYHPD+ PD ++R+ F+ +A AYE LKDE TR+ YDY + HPEE + + YY K D R V++ + S FQY + W+ YN+A+ + YR ++A+E+ + G+ N+ K + + E S+E + IKG +KP +++++ ++IL PY I K + W+ W + +N++ Y E+ LYL ++++++ + ++E +K + ++LW K N E Y E +E K++ Sbjct: 50 GLYCGRQVCYDVLGVSRDASKGDIARAYRQLARKYHPDRYRPGEPPGPDGETRESAQEKFLLVATAYETLKDEETRKDYDYMLDHPEEYYRHYYHYYSRRLAPKVDVRIVILVSVCAISIFQYYSWWSSYNEAINYLATVTKYR--IQAMEIAKQQGLLNRTKEKGKNRRSKEEIKSEEEEIIRDIIKNKIDIKGGYQKPQIFDILLFQIILFPYYIFKYISWYVHWIYTFNIQGKEYGEEEKLYLIRRNMKMSQSQFDTLEEHRKNSFLEQKLWIKENYEVYKLEQEEEMKKK 341
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_HUMAN (DnaJ homolog subfamily C member 25 OS=Homo sapiens OX=9606 GN=DNAJC25 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 5.276e-35 Identity = 93/294 (31.63%), Postives = 160/294 (54.42%), Query Frame = 1 Query: 79 AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDK-NPDP----------DSRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIK----------GAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 +YC DCY++LGVS++A +EI +AY +L+ +YHPD+ P P + + F+ +A AYE LKDE TR+ YDY + HPEE + + YY K D R V++ + S FQ+ + W YN+A++ + P YR ++A E+ + G+ K K + K E +E ++ G +KP + +L+ ++IL P+ + ++W+ RW + +N+K Y E+ LY+ +KS+++ + ++++ +KE + R LW K N E Y E +E K++ Sbjct: 42 GLYCGTRDCYEVLGVSRSAGKAEIARAYRQLARRYHPDRYRPQPGDEGPGRTPQSAEEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISVFQFFSWWNSYNKAISYLATVPKYR--IQATEIAKQQGLLKKAKEKGKNKKSKEEIRDEEENIIKNIIKSKIDIKGGYQKPQICDLLLFQIILAPFHLCSYIVWYCRWIYNFNIKGKEYGEEERLYIIRKSMKMSKSQFDSLEDHQKETFLKRELWIKENYEVYKQEQEEELKKK 333
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_MOUSE (DnaJ homolog subfamily C member 25 OS=Mus musculus OX=10090 GN=Dnajc25 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 5.573e-34 Identity = 95/292 (32.53%), Postives = 158/292 (54.11%), Query Frame = 1 Query: 79 AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDK---------NPDPDSRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIK----------GAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 +YC DCY++LGVS++A+ +EI +AY +L+ +YHPD+ P S + F+ +A AYE LKDE TR+ YDY + HPEE + + YY K D R V++ + S FQY + W YN+A++ + P YR ++A E+ + G+ K K + K E +E ++ G +KP V +L+ ++IL P + + W+ RW + +N+K Y E+ LY+ +KS+++ + ++++ +KE + R LW K N E Y E +E K++ Sbjct: 41 GLYCGTRDCYEVLGVSRSASKAEIARAYRQLARRYHPDRYRPEPGDGPGGAPPSAEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISMFQYFSWWNSYNKAISYLATVPKYR--IQATEIAKEQGLLKKAKEKGKNKKSKEEIRDEEENIIKNIIKSKIDIKGGYQKPQVRDLLLFQVILAPVHLCSYIAWYCRWIYNFNIKGKEYGEEERLYIIRKSMKMSQSQFDSLEDHQKEMFLKRELWIKENYEVYKQEQEEELKKK 330
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_RAT (DnaJ homolog subfamily C member 25 OS=Rattus norvegicus OX=10116 GN=Dnajc25 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.268e-33 Identity = 93/292 (31.85%), Postives = 158/292 (54.11%), Query Frame = 1 Query: 79 AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDK---------NPDPDSRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIK----------GAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 +YC DCY++LGVS++A+ +EI +AY +L+ +YHPD+ P S + F+ +A AYE LKDE TR+ YDY + HPEE + + YY K D R V++ + S FQY + W YN++++ + P YR ++A E+ + G+ K K + K E +E ++ G +KP V +L+ +++L P + + W+ RW + +N+K Y E+ LY+ +KS+++ + ++++ +KE + R LW K N E Y E +E K++ Sbjct: 41 GLYCGTRDCYEVLGVSRSASKAEIARAYRQLARRYHPDRYRPEPGDGPGGAPPSAEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISVFQYFSWWNSYNKSISYLATVPKYR--IQATEIAKEQGLLKKAKEKGKNKKSKEEIRDEEENIIKNIIKSKIDIKGGYQKPQVRDLLLFQVLLAPVHLCSYIAWYCRWVYNFNIKGKEYGEEERLYIIRKSMKMSQSQFDSLEDHQKEMFLKRELWIKENYEVYKQEQEEELKKK 330
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC25_DROME (DnaJ homolog subfamily C member 25 homolog OS=Drosophila melanogaster OX=7227 GN=CG7872 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.500e-29 Identity = 96/288 (33.33%), Postives = 161/288 (55.90%), Query Frame = 1 Query: 79 AIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKL----FVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKLRALELERSGGIPNXXXXXXXXXXXTGEDLSKELDLQIK-----------GAEKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKKEDLVNRRLWEKSNLESYLAEMRKESKRR 897 +YC +++CYD+LGV++ ++ SEI KAY +L+ +YHPD + +++ F +A AYEIL+DE +R YDY + +P+ + + RYY K D R V+V +L I S QY + W RY+ A+ P YRN+ ALE+ R +K K ++ + D EL+ I+ G KP++W+++ V+LI+ PYTI ++W +W+WRY V K Y E LYL ++ L + + ++ E+ ++ +LW++ N ++ AE +E K++ Sbjct: 24 GLYCGKENCYDVLGVTRESSKSEIGKAYRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDYDYMLDNPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQRYDSAIKYFATVPKYRNQ--ALEIARDE--IQEKIQKKGKNRMSKNDQRDELERIIRRVIEEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYTVMKQPYGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVAWKAEQEEEMKKK 307
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DNJ2_CAEEL (DnaJ homolog dnj-2 OS=Caenorhabditis elegans OX=6239 GN=dnj-2 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.987e-26 Identity = 90/308 (29.22%), Postives = 154/308 (50.00%), Query Frame = 1 Query: 40 SAIVLLLLISPSVA----------IYCDEDDCYDLLGVSQNA-NSSEIKKAYYKLSLKYHPDKNPDPDSRKL----FVKIANAYEILKDEATREQYDYAIAHPEEVFYNAARYYHAYYGHKTDPRAVLVGLLLIFSGFQYLNQWTRYNQAVAMVKKTPAYRNKL-------RALELERSGGIPNXXXXXXXXXXXTGEDLSKEL---DLQIKGA-EKPSVWELIGVRLILLPYTIGKXXXXXXXXXXXXNVKKASYAWEDALYLTQKSLRVPHDAWMNIDESKK----EDLVNRRLWEKSNLESYLAE 873 +A +L LL+S V +YC ++CYD+L V++ + ++ KAY L+ K+HPD+ + + + L F IA AYE LKD+ + YDY + HP++ FYN +YY K D R V+VG +LI S FQ+L+ ++++A+ +RN LE++R+G + +++ K++ +L + G ++ S+++ + I+ P TI + + W WYWR+ ++K Y + LYL +K + V M D+ +DL R W K N ++ AE Sbjct: 6 AAPILFLLVSFFVQECESVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLRAAPKVDLRIVIVGTILIISLFQFLSAKHKFSEAIEYATGVGKFRNMAIKDGIDKGLLEMDRNGKLKK-------NKGVDNDEVIKQIIIDNLDVTGGYKRESIYDTLAWHTIIFPLTIFRYIKWTALWYWRFAIQKEEYDDDAKLYLIRKYIGVSQ---MEFDQKYTDEDIDDLFERECWLKRNCATWKAE 303
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Match: DJC10_XENLA (DnaJ homolog subfamily C member 10 OS=Xenopus laevis OX=8355 GN=dnajc10 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.809e-19 Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1 Query: 43 AIVLLLLISPSVAIYCDEDDCYDLLGVSQNANSSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYD 285 I+ L+LIS + +YCD DD YDLLGVS+ A + EI++A+ KL+LK HPDKN DPD+ F+KI AYE+LKDE R++YD Sbjct: 18 TILYLVLISLAALVYCD-DDYYDLLGVSKAATNREIRQAFKKLALKLHPDKNKDPDAHNKFLKINRAYEVLKDEDLRKKYD 97 The following BLAST results are available for this feature:
BLAST of orange1.1g022251m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g022251m.v1.1_Csinensis_154_v1.1 ID=orange1.1g022251m.v1.1_Csinensis_154_v1.1; Name=orange1.1g022251m.v1.1; organism=Citrus sinensis; type=mRNA; length=2823bpback to top mRNA from alignment at scaffold00010:1056651..1059473- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2823bp; location=Sequence derived from: scaffold00010:1056651..1059473- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1056651..1059473- >orange1.1g022251m.v1.1_Csinensis_154_v1.1 ID=orange1.1g022251m.v1.1_Csinensis_154_v1.1; Name=orange1.1g022251m.v1.1; organism=Citrus sinensis; type=CDS; length=903bp; location=Sequence derived from: scaffold00010:1056651..1059473- (Citrus sinensisback to top |