Transcript Overview
Name | orange1.1g030024m.v1.1 |
Unique Name | orange1.1g030024m.v1.1_Csinensis_154_v1.1 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 2714 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g030024m.v1.1 | orange1.1g030024m.v1.1_Csinensis_154_v1.1-protein | Citrus sinensis | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g030024m.v1.1.exon.1 | orange1.1g030024m.v1.1.exon.1_Csinensis_154_v1.1 | Citrus sinensis | exon |
orange1.1g030024m.v1.1.exon.2 | orange1.1g030024m.v1.1.exon.2_Csinensis_154_v1.1 | Citrus sinensis | exon |
orange1.1g030024m.v1.1.exon.3 | orange1.1g030024m.v1.1.exon.3_Csinensis_154_v1.1 | Citrus sinensis | exon |
orange1.1g030024m.v1.1.exon.4 | orange1.1g030024m.v1.1.exon.4_Csinensis_154_v1.1 | Citrus sinensis | exon |
orange1.1g030024m.v1.1.exon.5 | orange1.1g030024m.v1.1.exon.5_Csinensis_154_v1.1 | Citrus sinensis | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g030024m.v1.1.five_prime_UTR.1 | orange1.1g030024m.v1.1.five_prime_UTR.1_Csinensis_154_v1.1 | Citrus sinensis | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g030024m.v1.1.CDS.1 | orange1.1g030024m.v1.1.CDS.1_Csinensis_154_v1.1 | Citrus sinensis | CDS |
orange1.1g030024m.v1.1.CDS.2 | orange1.1g030024m.v1.1.CDS.2_Csinensis_154_v1.1 | Citrus sinensis | CDS |
orange1.1g030024m.v1.1.CDS.3 | orange1.1g030024m.v1.1.CDS.3_Csinensis_154_v1.1 | Citrus sinensis | CDS |
orange1.1g030024m.v1.1.CDS.4 | orange1.1g030024m.v1.1.CDS.4_Csinensis_154_v1.1 | Citrus sinensis | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g030024m.v1.1.three_prime_UTR.1 | orange1.1g030024m.v1.1.three_prime_UTR.1_Csinensis_154_v1.1 | Citrus sinensis | three_prime_UTR |
orange1.1g030024m.v1.1.three_prime_UTR.2 | orange1.1g030024m.v1.1.three_prime_UTR.2_Csinensis_154_v1.1 | Citrus sinensis | three_prime_UTR |
Homology
BLAST of orange1.1g030024m.v1.1 vs. DB:SwissProt
Match: HSA32_ARATH (Protein HEAT-STRESS-ASSOCIATED 32 OS=Arabidopsis thaliana OX=3702 GN=HSA32 PE=2 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 4.369e-91 Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 1 Query: 13 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEGPKD 549
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E +D
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSNSLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANLLEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVED 180
The following BLAST results are available for this feature:
BLAST of orange1.1g030024m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 ( C. sinensis v1.1 CDS)
Total hits: 1
Match Name | E-value | Identity | Description | |
HSA32_ARATH | 4.369e-91 | 70.95 | Protein HEAT-STRESS-ASSOCIATED 32 OS=Arabidopsis t... | [more] |
back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g030024m.v1.1_Csinensis_154_v1.1 ID=orange1.1g030024m.v1.1_Csinensis_154_v1.1; Name=orange1.1g030024m.v1.1; organism=Citrus sinensis; type=mRNA; length=2714bp AAAATACAGGAAATAGAAAAACATTTTATTTtCTAGAAGGAGCTCAAGAC ATCTCCAGAAAaCTAGCCATTTCTTGattaaaaaaaaaaaaaaaGTaaGa TAAAATCGAAGAGAAAGATTGAGCAAAAGAGAAACAGAAAGGAAATCAAA CGGGATCAATGTCTGGGTATTATTACGGATGGAAGAGCTTCGACGAgtAC GAGGACAGGGCAGAGAAACCTCGGAGGTTCGGTGTCACCGAGATGAGAAG TCCTCATTATACTCTCAGCAGCAGCCATAACGTCCTCGAGGTTTTTCTCT TTCTTTATTTTTTATGAACTGAACCTTCTTTTTATAATTTGTTATTAAGT TGATAAGGTACTAACTTACATGGCATAATATGATGATAAGAAGAGTGGAA ACtCTTTTTTTTTTCACTCTTTCAATCATATCGCAGCCACTTCAATTCGT ACATATGACTTGCTATAGATGAGTTGCTCTCCAGATGCTATGCCTTCTGA TATAAATTGATTCACCTACCTAAGATGGATGAATTTTTTAATAAGCTTAT GACTCCAGCTATATGGTCCTTATTTGTTGTTAAAAGACATGGTTTATTGT TTTGCTTTGAGGTACTGATGTCCTTGGTTAATGGAGCACGATTGATGTGT AACTCTGGGAGGTGATGCGGTTGGAGCGGTTCTACCGGTTCTTCTGACTG TTATTATGCTTTTCAGGACATTTTTGAGTCTATGGGGCAGTTTGTCGACG GATTGAAGTTCTCTGGGGGTTCCCACAGCCTGATGCCAAAACCCTTTATC GAAGAAGTTGTTAAAAGGGCACACCAACATGATGTATATGTAAGTACAGG TGACTGGGCTGAACATTTGATTCGTAATGGTCCATCAGCTTTCAAAGAAT ATGTTGAGGTAAGTTGTGCTACAACAAACAACTATTGAGTCTCTTAATAT TATTGCATAACTGATTTGGATATCCCCCCTGTGATATCTTTTTTTTTTTt tAAAGGATTGTAAGCAGGTGGGATTTGACACAATCGAGCTAAATGTTGGA TCACTAGAGATTCCTGAAGAAACTCTTCTCAGATACGTCCGCTTGGTTAA GAGTGCTGGTCTGAAAGCCAAGCCTAAATTTGCAGTAATGTTTAATAAGT CAGACATTCCCTCAGACCGTGATAGAGCATTTGGGGCTTATGTTGCTCGA GCACCTCGGTCGACTGGTATGACCATGGACTTTCGTTGATGATCTGCTAT TACAACATGAAACTTAGTATttTTTTTTTTtATTTGTCTGCTTTTCTAGA GGTTGCCtGTTAACAATGCGGATATATATTTCTTATGATAAACATTGGCT GCAGATAAACTCTTTCTGGCATCTAAtCCAGAAATCGAGGTTGGTGTAGG TATCAACAAATCGAGGTTGGTTGAAAGCATGTTTAGTTTCTACTTGTGGG TAGCAGAGGTATCCATGCTATCAAGGGTAGTGAAGGGTCAAATTTAAACC CATAAACACCATAAGATTAGCTCAGAAAACTGCTACATTGCACCTTCCTT GAAATATATACTTTATTGAATGAATGCAAATATGGGACCTTTTAGTTAAT TTGTCACAAATTGTTACAAAACTTTATTTAGGTGAGTGTTTAAGCAATTT CTTTTTTGCAAACCTAAATGGGCCCTATTGAGTCATGTTGGCAATTATAT GGGCAGAGGTTCGTTGTTGAGGTCAGATTGTTTGTATAAGTATCTCCAAC TCAAGAGACCCACACAAAAAaTAAATAAATAAATAAATAAAACAAAGAGA AGCAAAGCTGAAtGTTTTAATGAAATGCTTGGTTTGTTTGAAGCTCTATC ACTTTTCTTATCTTAAATTGCCTAAGTTGTGCTGAACTTTGGAATATTGA ATGGGAAACTAGGGGTTGTCAGATGAGATATATTGAAaGAATTACAATCT GTTTAGGAAACTGATAATGACAAGATTGTAAACAATCTTTCTAACGATGC ATCACTTCTGTTTCTATAGAATATGTTGAAGATGTGGATCTTTTGATCAG AAGGGCCGAAAGATGCTTAGAAGCTGGTGCAGACATGATTATGATTGATT CTGATGATGTCTGCAAACACGCTGACTCTTTGAGGGCAGACATAATTGCA AAGGTCATTGGACGTCTAGGTCTTGAGAAGACCATGTTTGAAGCAACAAA TCCAAGAACTTCTGAGTGGTTCATCAGGCGCTATGGTCCGAAGGTATAAC ATTTATTGAGTGTTTCATTCCATTACTTAACTGGAGTCTTAGATGTGAAT GACATACTTCTGACTGGtGGGGATCGGATTTGCAGGTAAATCTATTTGTG GATCACTCTCAAGTGATGGATCTAGAATGCCTCCGTGGCCGTAACTTGGG TAAAAGTCACAGATCTGTTTTGAGTTCGTCATATTTCCTGCTCTGAGTGG CTACCAATTGTTGGGCTAAATCTGTGCCTTcGTGCAGCTGGTTTGTTATT GGTGTAATAATTTGTGTGTTGTGAAAATGTTGAAAATTGTGAGTGTATGA GTGTGAACGTGGCCAATAAATGCCTCAAAGCTTTTTAATGTGACATAAGA TGGTTAATGTAAAACCTGGCGTCAGAGGTGTAAATTGCGTGGTGTTAATC CCAACTGAAATGGTGCTTTGGAGAATGATTAAGGCATTATAAAAACTCAA ACTGGGAATTTGGA back to topmRNA from alignment at scaffold00010:1246219..1248932+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=2714bp; location=Sequence derived from: scaffold00010:1246219..1248932+ (Citrus sinensis AAAATACAGGAAATAGAAAAACATTTTATTTtCTAGAAGGAGCTCAAGAC
ATCTCCAGAAAaCTAGCCATTTCTTGattaaaaaaaaaaaaaaaGTaaGa
TAAAATCGAAGAGAAAGATTGAGCAAAAGAGAAACAGAAAGGAAATCAAA
CGGGATCAATGTCTGGGTATTATTACGGATGGAAGAGCTTCGACGAgtAC
GAGGACAGGGCAGAGAAACCTCGGAGGTTCGGTGTCACCGAGATGAGAAG
TCCTCATTATACTCTCAGCAGCAGCCATAACGTCCTCGAGGTTTTTCTCT
TTCTTTATTTTTTATGAACTGAACCTTCTTTTTATAATTTGTTATTAAGT
TGATAAGGTACTAACTTACATGGCATAATATGATGATAAGAAGAGTGGAA
ACtCTTTTTTTTTTCACTCTTTCAATCATATCGCAGCCACTTCAATTCGT
ACATATGACTTGCTATAGATGAGTTGCTCTCCAGATGCTATGCCTTCTGA
TATAAATTGATTCACCTACCTAAGATGGATGAATTTTTTAATAAGCTTAT
GACTCCAGCTATATGGTCCTTATTTGTTGTTAAAAGACATGGTTTATTGT
TTTGCTTTGAGGTACTGATGTCCTTGGTTAATGGAGCACGATTGATGTGT
AACTCTGGGAGGTGATGCGGTTGGAGCGGTTCTACCGGTTCTTCTGACTG
TTATTATGCTTTTCAGGACATTTTTGAGTCTATGGGGCAGTTTGTCGACG
GATTGAAGTTCTCTGGGGGTTCCCACAGCCTGATGCCAAAACCCTTTATC
GAAGAAGTTGTTAAAAGGGCACACCAACATGATGTATATGTAAGTACAGG
TGACTGGGCTGAACATTTGATTCGTAATGGTCCATCAGCTTTCAAAGAAT
ATGTTGAGGTAAGTTGTGCTACAACAAACAACTATTGAGTCTCTTAATAT
TATTGCATAACTGATTTGGATATCCCCCCTGTGATATCTTTTTTTTTTTt
tAAAGGATTGTAAGCAGGTGGGATTTGACACAATCGAGCTAAATGTTGGA
TCACTAGAGATTCCTGAAGAAACTCTTCTCAGATACGTCCGCTTGGTTAA
GAGTGCTGGTCTGAAAGCCAAGCCTAAATTTGCAGTAATGTTTAATAAGT
CAGACATTCCCTCAGACCGTGATAGAGCATTTGGGGCTTATGTTGCTCGA
GCACCTCGGTCGACTGGTATGACCATGGACTTTCGTTGATGATCTGCTAT
TACAACATGAAACTTAGTATttTTTTTTTTtATTTGTCTGCTTTTCTAGA
GGTTGCCtGTTAACAATGCGGATATATATTTCTTATGATAAACATTGGCT
GCAGATAAACTCTTTCTGGCATCTAAtCCAGAAATCGAGGTTGGTGTAGG
TATCAACAAATCGAGGTTGGTTGAAAGCATGTTTAGTTTCTACTTGTGGG
TAGCAGAGGTATCCATGCTATCAAGGGTAGTGAAGGGTCAAATTTAAACC
CATAAACACCATAAGATTAGCTCAGAAAACTGCTACATTGCACCTTCCTT
GAAATATATACTTTATTGAATGAATGCAAATATGGGACCTTTTAGTTAAT
TTGTCACAAATTGTTACAAAACTTTATTTAGGTGAGTGTTTAAGCAATTT
CTTTTTTGCAAACCTAAATGGGCCCTATTGAGTCATGTTGGCAATTATAT
GGGCAGAGGTTCGTTGTTGAGGTCAGATTGTTTGTATAAGTATCTCCAAC
TCAAGAGACCCACACAAAAAaTAAATAAATAAATAAATAAAACAAAGAGA
AGCAAAGCTGAAtGTTTTAATGAAATGCTTGGTTTGTTTGAAGCTCTATC
ACTTTTCTTATCTTAAATTGCCTAAGTTGTGCTGAACTTTGGAATATTGA
ATGGGAAACTAGGGGTTGTCAGATGAGATATATTGAAaGAATTACAATCT
GTTTAGGAAACTGATAATGACAAGATTGTAAACAATCTTTCTAACGATGC
ATCACTTCTGTTTCTATAGAATATGTTGAAGATGTGGATCTTTTGATCAG
AAGGGCCGAAAGATGCTTAGAAGCTGGTGCAGACATGATTATGATTGATT
CTGATGATGTCTGCAAACACGCTGACTCTTTGAGGGCAGACATAATTGCA
AAGGTCATTGGACGTCTAGGTCTTGAGAAGACCATGTTTGAAGCAACAAA
TCCAAGAACTTCTGAGTGGTTCATCAGGCGCTATGGTCCGAAGGTATAAC
ATTTATTGAGTGTTTCATTCCATTACTTAACTGGAGTCTTAGATGTGAAT
GACATACTTCTGACTGGtGGGGATCGGATTTGCAGGTAAATCTATTTGTG
GATCACTCTCAAGTGATGGATCTAGAATGCCTCCGTGGCCGTAACTTGGG
TAAAAGTCACAGATCTGTTTTGAGTTCGTCATATTTCCTGCTCTGAGTGG
CTACCAATTGTTGGGCTAAATCTGTGCCTTcGTGCAGCTGGTTTGTTATT
GGTGTAATAATTTGTGTGTTGTGAAAATGTTGAAAATTGTGAGTGTATGA
GTGTGAACGTGGCCAATAAATGCCTCAAAGCTTTTTAATGTGACATAAGA
TGGTTAATGTAAAACCTGGCGTCAGAGGTGTAAATTGCGTGGTGTTAATC
CCAACTGAAATGGTGCTTTGGAGAATGATTAAGGCATTATAAAAACTCAA
ACTGGGAATTTGGA back to topCoding sequence (CDS) from alignment at scaffold00010:1246219..1248932+ >orange1.1g030024m.v1.1_Csinensis_154_v1.1 ID=orange1.1g030024m.v1.1_Csinensis_154_v1.1; Name=orange1.1g030024m.v1.1; organism=Citrus sinensis; type=CDS; length=555bp; location=Sequence derived from: scaffold00010:1246219..1248932+ (Citrus sinensis ATGTCTGGGTATTATTACGGATGGAAGAGCTTCGACGAgtACGAGGACAG GGCAGAGAAACCTCGGAGGTTCGGTGTCACCGAGATGAGAAGTCCTCATT ATACTCTCAGCAGCAGCCATAACGTCCTCGAGGACATTTTTGAGTCTATG GGGCAGTTTGTCGACGGATTGAAGTTCTCTGGGGGTTCCCACAGCCTGAT GCCAAAACCCTTTATCGAAGAAGTTGTTAAAAGGGCACACCAACATGATG TATATGTAAGTACAGGTGACTGGGCTGAACATTTGATTCGTAATGGTCCA TCAGCTTTCAAAGAATATGTTGAGGATTGTAAGCAGGTGGGATTTGACAC AATCGAGCTAAATGTTGGATCACTAGAGATTCCTGAAGAAACTCTTCTCA GATACGTCCGCTTGGTTAAGAGTGCTGGTCTGAAAGCCAAGCCTAAATTT GCAGTAATGTTTAATAAGTCAGACATTCCCTCAGACCGTGATAGAGCATT TGGGGCTTATGTTGCTCGAGCACCTCGGTCGACTGAAGGGCCGAAAGATG CTTAG back to top
|